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ENCODE: H3K4me3 ChIP-Seq of primary human cells

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CREMA is a free online tool that recognizes most important transcription factors that change the chromatin state across different samples.

Results for BATF3

Z-value: 0.19

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Transcription factors associated with BATF3

Gene Symbol	Gene ID	Gene Info
BATF3 Ensembl NCBI GeneCards UniProt	ENSG00000123685.4	BATF3

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

CRE	Gene	Distance	Association probability	Pearson corr. coef.	P-value	Plot
BATF3	chr1_212873408_212874176	465	0.794313	0.54	1.3e-01	Click!
BATF3	chr1_212872713_212873036	453	0.800510	0.44	2.4e-01	Click!
BATF3	chr1_212872305_212872712	819	0.590846	0.34	3.7e-01	Click!
BATF3	chr1_212894826_212895102	21637	0.152140	0.32	4.0e-01	Click!
BATF3	chr1_212874293_212874444	1041	0.497527	0.25	5.1e-01	Click!

Activity of the BATF3 motif across conditions

Conditions sorted by the z-value of the BATF3 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE)	Target Score	Top associated gene	Gene Info	Distance of CRE to TSS	CRE/Gene association probability
chr1_228353838_228353989	0.09	IBA57	IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)	397	0.6
chr6_82569789_82569940	0.06	ENSG00000206886	.	96123	0.08
chr19_8454704_8454922	0.06	RAB11B	RAB11B, member RAS oncogene family	52	0.65
chr2_8144573_8144775	0.06	ENSG00000221255	.	427702	0.01
chr14_102785719_102785950	0.05	ZNF839	zinc finger protein 839	199	0.92
chr22_39745318_39745552	0.05	SYNGR1	synaptogyrin 1	495	0.71
chr1_198904042_198904315	0.05	ENSG00000207759	.	75896	0.11
chr12_7282858_7283009	0.05	RP11-273B20.1		85	0.56
chr4_170580994_170582031	0.05	CLCN3	chloride channel, voltage-sensitive 3	299	0.93
chr5_176881613_176881764	0.04	PRR7	proline rich 7 (synaptic)	6353	0.1
chr6_27832819_27832970	0.04	HIST1H2AL	histone cluster 1, H2al	140	0.87
chr13_50698385_50698672	0.04	DLEU1	deleted in lymphocytic leukemia 1 (non-protein coding)	42221	0.15
chr4_88930112_88930263	0.04	PKD2	polycystic kidney disease 2 (autosomal dominant)	1367	0.43
chr5_112849172_112849403	0.04	YTHDC2	YTH domain containing 2	93	0.97
chr12_10771207_10771388	0.04	MAGOHB	mago-nashi homolog B (Drosophila)	5075	0.18
chr22_51059513_51059819	0.04	ARSA	arylsulfatase A	6917	0.1
chr22_21333840_21334133	0.04	LZTR1	leucine-zipper-like transcription regulator 1	2316	0.14
chr19_2775817_2776209	0.03	SGTA	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	5234	0.12
chr5_33441537_33442301	0.03	TARS	threonyl-tRNA synthetase	432	0.78
chr3_159571158_159571312	0.03	SCHIP1	schwannomin interacting protein 1	507	0.8
chrX_40943933_40944084	0.03	USP9X	ubiquitin specific peptidase 9, X-linked	880	0.73
chr3_101405604_101405866	0.03	RPL24	ribosomal protein L24	109	0.94
chr16_67564286_67564635	0.03	FAM65A	family with sequence similarity 65, member A	766	0.44
chr22_22020368_22020729	0.03	PPIL2	peptidylprolyl isomerase (cyclophilin)-like 2	190	0.88
chr14_100112036_100112187	0.03	HHIPL1	HHIP-like 1	631	0.72
chr17_34115736_34115943	0.03	MMP28	matrix metallopeptidase 28	6872	0.1
chr12_82794791_82794942	0.02	METTL25	methyltransferase like 25	1728	0.44
chr1_234176768_234176919	0.02	RP11-488L4.1		89990	0.09
chr7_151575210_151575378	0.02	PRKAG2-AS1	PRKAG2 antisense RNA 1	744	0.48
chr13_36871577_36872517	0.02	SOHLH2	spermatogenesis and oogenesis specific basic helix-loop-helix 2	68	0.34
chr8_21967077_21967500	0.02	NUDT18	nudix (nucleoside diphosphate linked moiety X)-type motif 18	356	0.79
chr17_38560668_38560819	0.02	ENSG00000222881	.	13153	0.11
chr1_168147799_168148070	0.02	TIPRL	TIP41, TOR signaling pathway regulator-like (S. cerevisiae)	237	0.94
chr21_46898660_46898949	0.02	COL18A1	collagen, type XVIII, alpha 1	11385	0.19
chr13_32525396_32525547	0.02	EEF1DP3	eukaryotic translation elongation factor 1 delta pseudogene 3	1246	0.59
chr6_3157575_3157860	0.02	TUBB2A	tubulin, beta 2A class IIa	43	0.97
chr18_29542335_29542486	0.02	TRAPPC8	trafficking protein particle complex 8	19341	0.14
chr10_99496753_99496904	0.02	ZFYVE27	zinc finger, FYVE domain containing 27	50	0.97
chr12_25486836_25487071	0.02	ENSG00000201439	.	70409	0.1
chr3_28877353_28877504	0.02	ENSG00000238470	.	175305	0.03
chr11_108535331_108535645	0.02	DDX10	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	264	0.95
chr22_36519910_36520146	0.02	APOL3	apolipoprotein L, 3	36803	0.17
chr20_62580551_62580702	0.01	UCKL1	uridine-cytidine kinase 1-like 1	1853	0.14
chr14_100028328_100028479	0.01	CCDC85C	coiled-coil domain containing 85C	10909	0.17
chr2_202645711_202646712	0.01	ALS2	amyotrophic lateral sclerosis 2 (juvenile)	299	0.88
chr6_91006489_91006667	0.01	BACH2	BTB and CNC homology 1, basic leucine zipper transcription factor 2	49	0.98
chr1_22379888_22380679	0.01	CDC42	cell division cycle 42	493	0.71
chr13_97876069_97876689	0.01	MBNL2	muscleblind-like splicing regulator 2	1770	0.5
chr3_115231729_115232383	0.01	GAP43	growth associated protein 43	110115	0.07
chr1_26496320_26496791	0.01	ZNF593	zinc finger protein 593	122	0.88
chr1_40860813_40861098	0.01	SMAP2	small ArfGAP2	1552	0.37
chr2_19774725_19774876	0.01	OSR1	odd-skipped related transciption factor 1	216386	0.02
chr5_176569173_176569324	0.01	NSD1	nuclear receptor binding SET domain protein 1	7143	0.21
chr15_101733614_101733826	0.01	CHSY1	chondroitin sulfate synthase 1	58417	0.11
chr1_16677480_16677631	0.01	FBXO42	F-box protein 42	1394	0.38
chr12_117256876_117257597	0.01	ENSG00000201382	.	37326	0.16
chr2_220109752_220110249	0.01	GLB1L	galactosidase, beta 1-like	128	0.54
chr15_72766100_72766509	0.01	ARIH1	ariadne RBR E3 ubiquitin protein ligase 1	363	0.89
chr20_42219265_42219562	0.01	IFT52	intraflagellar transport 52 homolog (Chlamydomonas)	158	0.95
chr8_10696975_10697533	0.01	PINX1	PIN2/TERF1 interacting, telomerase inhibitor 1	27	0.57
chr9_139117671_139117822	0.01	QSOX2	quiescin Q6 sulfhydryl oxidase 2	1023	0.52
chr1_101334241_101334590	0.01	EXTL2	exostosin-like glycosyltransferase 2	25805	0.15
chr2_96873223_96873536	0.01	ENSG00000204685	.	775	0.47
chr14_69328469_69328679	0.01	ENSG00000263694	.	16055	0.2
chr6_144671797_144672109	0.01	UTRN	utrophin	6716	0.26
chr6_27101806_27101969	0.01	HIST1H2AG	histone cluster 1, H2ag	1055	0.31
chr2_28582064_28582304	0.01	FOSL2	FOS-like antigen 2	33485	0.14
chr8_74792637_74792788	0.01	UBE2W	ubiquitin-conjugating enzyme E2W (putative)	1567	0.43
chr2_65659623_65660251	0.01	SPRED2	sprouty-related, EVH1 domain containing 2	166	0.97
chr4_136436588_136436739	0.01	ENSG00000207849	.	143827	0.05
chr3_107646209_107646537	0.01	BBX	bobby sox homolog (Drosophila)	128935	0.06
chr11_66059397_66059767	0.01	TMEM151A	transmembrane protein 151A	241	0.77
chr3_53380473_53381043	0.00	DCP1A	decapping mRNA 1A	794	0.58
chr1_181056884_181057035	0.00	IER5	immediate early response 5	679	0.74
chr1_9790575_9790726	0.00	PIK3CD	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta	12523	0.17
chr1_23883319_23883470	0.00	ID3	inhibitor of DNA binding 3, dominant negative helix-loop-helix protein	2891	0.25
chr6_28864112_28865009	0.00	HCG14	HLA complex group 14 (non-protein coding)	253	0.89
chr19_57874813_57875444	0.00	TRAPPC2P1	trafficking protein particle complex 2 pseudogene 1	193	0.32
chr22_50912392_50912937	0.00	SBF1	SET binding factor 1	707	0.46
chr22_44207671_44207833	0.00	EFCAB6	EF-hand calcium binding domain 6	318	0.69
chr10_123922760_123923208	0.00	TACC2	transforming, acidic coiled-coil containing protein 2	43	0.99
chr3_146905614_146905765	0.00	RP11-649A16.1		182754	0.03
chr12_110010896_110011058	0.00	MVK	mevalonate kinase	83	0.79
chr16_2178420_2178600	0.00	ENSG00000200059	.	3342	0.07
chr1_111746296_111746584	0.00	DENND2D	DENN/MADD domain containing 2D	591	0.63
chr6_31939259_31939914	0.00	STK19	serine/threonine kinase 19	22	0.66
chr1_151445466_151445952	0.00	POGZ	pogo transposable element with ZNF domain	13768	0.11
chrX_155111070_155111694	0.00	VAMP7	vesicle-associated membrane protein 7	341	0.92
chr17_19367994_19368145	0.00	ENSG00000265335	.	44477	0.09
chr22_25815184_25815434	0.00	LRP5L	low density lipoprotein receptor-related protein 5-like	13965	0.17
chr7_27232397_27232921	0.00	HOXA11-AS	HOXA11 antisense RNA	5221	0.07
chr5_138739039_138739512	0.00	SPATA24	spermatogenesis associated 24	464	0.67
chr3_151090226_151090493	0.00	P2RY12	purinergic receptor P2Y, G-protein coupled, 12	12241	0.19
chr19_18723621_18724041	0.00	TMEM59L	transmembrane protein 59-like	149	0.91