Project

ENCODE: H3K4me3 ChIP-Seq of primary human cells

Navigation

Downloads

CREMA is a free online tool that recognizes most important transcription factors that change the chromatin state across different samples.

Results for CBFB

Z-value: 0.23

Motif logo

Transcription factors associated with CBFB

Gene Symbol	Gene ID	Gene Info
CBFB Ensembl NCBI GeneCards UniProt	ENSG00000067955.9	CBFB

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

CRE	Gene	Distance	Association probability	Pearson corr. coef.	P-value	Plot
CBFB	chr16_67063172_67063793	118	0.942106	-0.62	7.4e-02	Click!
CBFB	chr16_67096966_67097117	33186	0.087619	0.52	1.5e-01	Click!
CBFB	chr16_67089936_67090087	26156	0.098751	0.46	2.1e-01	Click!
CBFB	chr16_67066013_67066164	2233	0.200612	-0.43	2.5e-01	Click!
CBFB	chr16_67062127_67062421	745	0.533375	-0.36	3.5e-01	Click!

Activity of the CBFB motif across conditions

Conditions sorted by the z-value of the CBFB motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE)	Target Score	Top associated gene	Gene Info	Distance of CRE to TSS	CRE/Gene association probability
chr2_44347613_44347791	0.04	ENSG00000252599	.	34332	0.15
chr18_74843262_74844680	0.04	MBP	myelin basic protein	331	0.94
chr16_55542879_55544136	0.03	LPCAT2	lysophosphatidylcholine acyltransferase 2	597	0.77
chr16_89392054_89392556	0.03	AC137932.6		2673	0.19
chr1_9953446_9953936	0.03	CTNNBIP1	catenin, beta interacting protein 1	396	0.8
chr7_19144831_19144982	0.03	AC003986.6		7191	0.17
chr10_88159807_88161210	0.03	GRID1	glutamate receptor, ionotropic, delta 1	34273	0.17
chr2_55644066_55644508	0.03	CCDC88A	coiled-coil domain containing 88A	2125	0.27
chr9_7976512_7976663	0.02	TMEM261	transmembrane protein 261	176520	0.04
chr13_28975822_28976139	0.02	FLT1	fms-related tyrosine kinase 1	55554	0.16
chr9_18976648_18977105	0.02	FAM154A	family with sequence similarity 154, member A	56310	0.1
chr1_209823926_209824302	0.02	LAMB3	laminin, beta 3	565	0.7
chr4_124981640_124982053	0.02	ANKRD50	ankyrin repeat domain 50	652041	0.0
chr15_90380123_90380631	0.02	ENSG00000264966	.	13576	0.11
chr8_106102434_106102585	0.02	RP11-574O7.1		98325	0.09
chr12_112818867_112820166	0.02	HECTD4	HECT domain containing E3 ubiquitin protein ligase 4	380	0.87
chr3_49394601_49395955	0.02	GPX1	glutathione peroxidase 1	438	0.72
chr13_68090205_68090367	0.02	PCDH9	protocadherin 9	285818	0.01
chr11_122029721_122030081	0.02	ENSG00000207994	.	6885	0.18
chr17_20491916_20492779	0.02	CDRT15L2	CMT1A duplicated region transcript 15-like 2	9310	0.21
chr1_8433877_8434267	0.02	RERE	arginine-glutamic acid dipeptide (RE) repeats	9174	0.19
chr5_166887847_166887998	0.02	CTB-105L4.2		151047	0.04
chr6_154490671_154490822	0.02	IPCEF1	interaction protein for cytohesin exchange factors 1	77244	0.11
chr10_98272514_98273588	0.02	TLL2	tolloid-like 2	617	0.79
chr6_165722551_165723097	0.02	C6orf118	chromosome 6 open reading frame 118	272	0.95
chr9_94182057_94182286	0.02	NFIL3	nuclear factor, interleukin 3 regulated	3973	0.34
chr17_57719590_57719741	0.02	CLTC	clathrin, heavy chain (Hc)	22372	0.17
chr12_41583641_41584059	0.02	PDZRN4	PDZ domain containing ring finger 4	1600	0.56
chr10_130673966_130674117	0.02	MGMT	O-6-methylguanine-DNA methyltransferase	591407	0.0
chr4_153527366_153527517	0.02	RP11-768B22.2		60079	0.11
chr3_31402829_31403285	0.02	ENSG00000238727	.	34372	0.23
chr22_18049670_18050213	0.02	SLC25A18	solute carrier family 25 (glutamate carrier), member 18	6791	0.19
chr18_21405936_21406114	0.02	LAMA3	laminin, alpha 3	7892	0.26
chr5_154151043_154151438	0.02	LARP1	La ribonucleoprotein domain family, member 1	14506	0.17
chr12_20000310_20000490	0.02	ENSG00000200885	.	123031	0.06
chr8_110632793_110632963	0.02	SYBU	syntabulin (syntaxin-interacting)	12574	0.18
chr12_123367754_123367930	0.02	VPS37B	vacuolar protein sorting 37 homolog B (S. cerevisiae)	6864	0.17
chr22_24721245_24721396	0.02	SPECC1L	sperm antigen with calponin homology and coiled-coil domains 1-like	20956	0.18
chr13_45145551_45145847	0.02	TSC22D1	TSC22 domain family, member 1	4693	0.31
chr4_153703528_153703679	0.02	ARFIP1	ADP-ribosylation factor interacting protein 1	2466	0.28
chr20_4669808_4669959	0.02	PRNP	prion protein	2694	0.3
chr2_9139987_9140138	0.02	MBOAT2	membrane bound O-acyltransferase domain containing 2	3732	0.3
chr16_62068993_62069255	0.02	CDH8	cadherin 8, type 2	86	0.98
chr2_44472177_44472328	0.02	ENSG00000239052	.	5452	0.2
chr8_96031017_96031168	0.02	NDUFAF6	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	6122	0.18
chr18_52763849_52764148	0.02	ENSG00000252437	.	49878	0.16
chr15_57371657_57371950	0.02	ENSG00000222586	.	113208	0.06
chr17_79315981_79316442	0.02	TMEM105	transmembrane protein 105	11737	0.13
chr3_71834358_71834666	0.02	PROK2	prokineticin 2	155	0.96
chr8_19112471_19112622	0.02	SH2D4A	SH2 domain containing 4A	58582	0.16
chr1_186808344_186808515	0.02	PLA2G4A	phospholipase A2, group IVA (cytosolic, calcium-dependent)	10307	0.31
chr21_40386589_40386894	0.02	ENSG00000272015	.	120032	0.05
chr18_62105511_62105662	0.02	ENSG00000252818	.	111156	0.07
chr8_23656283_23656639	0.02	ENSG00000207027	.	7429	0.2
chr5_40224048_40224291	0.02	ENSG00000199361	.	45491	0.19
chrX_46442135_46442322	0.02	CHST7	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7	9009	0.23
chr4_173063595_173063799	0.02	GALNTL6	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	90101	0.11
chr5_99606023_99606303	0.02	ENSG00000207077	.	116787	0.07
chr4_5052773_5052975	0.02	STK32B	serine/threonine kinase 32B	295	0.93
chr6_76645073_76645368	0.02	IMPG1	interphotoreceptor matrix proteoglycan 1	454	0.81
chr2_73463870_73464021	0.02	CCT7	chaperonin containing TCP1, subunit 7 (eta)	2499	0.19
chr1_153747814_153748820	0.02	SLC27A3	solute carrier family 27 (fatty acid transporter), member 3	549	0.6
chr9_687058_687461	0.02	RP11-130C19.3		1704	0.41
chr11_65256028_65256296	0.02	AP000769.1	Uncharacterized protein	33434	0.08
chr8_81933876_81934027	0.02	PAG1	phosphoprotein associated with glycosphingolipid microdomains 1	90352	0.09
chr8_41363635_41363786	0.02	GOLGA7	golgin A7	15537	0.15
chr16_73096665_73097349	0.02	ZFHX3	zinc finger homeobox 3	3410	0.3
chr6_158254601_158254752	0.02	RP11-52J3.3		3071	0.24
chr3_120626761_120627590	0.02	STXBP5L	syntaxin binding protein 5-like	14	0.99
chr2_179314595_179315822	0.02	PRKRA	protein kinase, interferon-inducible double stranded RNA dependent activator	276	0.8
chr21_38780543_38780694	0.02	DYRK1A	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A	10589	0.23
chr3_138405652_138405803	0.02	PIK3CB	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta	27601	0.21
chr17_2115742_2115893	0.02	SMG6	SMG6 nonsense mediated mRNA decay factor	214	0.85
chr12_12008308_12008477	0.02	ETV6	ets variant 6	30479	0.24
chr15_75335743_75336025	0.02	PPCDC	phosphopantothenoylcysteine decarboxylase	268	0.9
chr17_46681017_46681197	0.02	HOXB6	homeobox B6	1227	0.18
chr10_13380689_13380840	0.02	SEPHS1	selenophosphate synthetase 1	2026	0.31
chr3_37031282_37031460	0.02	EPM2AIP1	EPM2A (laforin) interacting protein 1	3424	0.2
chr8_1703441_1703788	0.02	CTD-2336O2.1		7849	0.21
chr6_138866633_138866868	0.02	NHSL1	NHS-like 1	98	0.98
chr5_122621760_122621911	0.02	CEP120	centrosomal protein 120kDa	137162	0.05
chr2_177447944_177448206	0.02	ENSG00000252027	.	81329	0.1
chr11_31825425_31825576	0.02	PAX6	paired box 6	2969	0.27
chr3_177695433_177695584	0.02	ENSG00000199858	.	30059	0.26
chr4_41157110_41157449	0.02	ENSG00000207198	.	41320	0.14
chr14_77508251_77508402	0.02	IRF2BPL	interferon regulatory factor 2 binding protein-like	13292	0.18
chr22_40357384_40357560	0.02	RP3-370M22.8		1071	0.49
chr4_184369530_184369754	0.02	CDKN2AIP	CDKN2A interacting protein	3792	0.23
chr7_127857654_127857944	0.02	ENSG00000207705	.	9875	0.19
chr17_19373891_19374103	0.02	ENSG00000265335	.	50405	0.08
chr17_38480138_38480579	0.02	RARA	retinoic acid receptor, alpha	5821	0.12
chr3_190436802_190436953	0.02	ENSG00000223117	.	76925	0.11
chr7_113722711_113723554	0.02	FOXP2	forkhead box P2	3483	0.3
chr9_95166770_95166921	0.02	OGN	osteoglycin	4	0.98
chr15_36145125_36145276	0.02	ENSG00000265098	.	73857	0.13
chr13_42137393_42137544	0.02	ENSG00000264190	.	5063	0.28
chr17_21154446_21154597	0.02	C17orf103	chromosome 17 open reading frame 103	2057	0.26
chr5_138206284_138206563	0.02	CTNNA1	catenin (cadherin-associated protein), alpha 1, 102kDa	3304	0.25
chr7_79908056_79908207	0.02	ENSG00000244392	.	32889	0.17
chr3_157217019_157217987	0.02	VEPH1	ventricular zone expressed PH domain-containing 1	58	0.98
chr11_58975341_58975492	0.02	MPEG1	macrophage expressed 1	5008	0.18
chr2_208602192_208602343	0.02	CCNYL1	cyclin Y-like 1	4731	0.16
chr2_169402424_169402596	0.02	ENSG00000265694	.	36943	0.17
chr3_54157684_54157865	0.02	CACNA2D3	calcium channel, voltage-dependent, alpha 2/delta subunit 3	286	0.95
chr1_184836333_184836484	0.02	ENSG00000252222	.	45785	0.15
chr6_137561305_137561456	0.02	IFNGR1	interferon gamma receptor 1	20794	0.24
chr13_40683698_40683888	0.02	ENSG00000207458	.	117171	0.07
chr12_32701711_32701862	0.02	FGD4	FYVE, RhoGEF and PH domain containing 4	14528	0.25
chr22_46472382_46472746	0.02	FLJ27365	hsa-mir-4763	3628	0.12
chr6_38420811_38420962	0.02	BTBD9-AS1	BTBD9 antisense RNA 1	28582	0.22
chr6_130005371_130005537	0.02	ARHGAP18	Rho GTPase activating protein 18	25916	0.23
chr2_28523371_28523522	0.02	AC093690.1		9880	0.25
chr14_29047076_29047227	0.02	RP11-966I7.1		187318	0.03
chr3_16525949_16526100	0.02	RFTN1	raftlin, lipid raft linker 1	1652	0.49
chr1_161187234_161187476	0.02	FCER1G	Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide	2268	0.11
chr18_55890673_55891004	0.02	NEDD4L	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase	2035	0.39
chr3_4517627_4517778	0.02	SUMF1	sulfatase modifying factor 1	8737	0.2
chr10_76092894_76093045	0.02	ADK	adenosine kinase	156448	0.04
chr15_37878446_37878600	0.02	TMCO5A	transmembrane and coiled-coil domains 5A	335617	0.01
chr10_54077811_54078125	0.02	DKK1	dickkopf WNT signaling pathway inhibitor 1	3912	0.28
chr4_33926484_33926635	0.02	ENSG00000251755	.	140002	0.05
chr10_112410971_112411122	0.02	RBM20	RNA binding motif protein 20	6891	0.16
chr3_181431793_181431944	0.02	SOX2	SRY (sex determining region Y)-box 2	2146	0.37
chr4_154149984_154150203	0.02	TRIM2	tripartite motif containing 2	24475	0.17
chr8_67624599_67625774	0.02	SGK3	serum/glucocorticoid regulated kinase family, member 3	533	0.76
chr9_21837665_21837816	0.02	MTAP	methylthioadenosine phosphorylase	16983	0.17
chr1_81703498_81704139	0.01	ENSG00000223026	.	13656	0.28
chr10_106112880_106113082	0.01	CCDC147-AS1	CCDC147 antisense RNA 1 (head to head)	352	0.61
chr15_57509980_57510170	0.01	TCF12	transcription factor 12	1553	0.51
chr1_28744223_28744374	0.01	ENSG00000206779	.	4868	0.17
chr3_59412823_59412974	0.01	C3orf67	chromosome 3 open reading frame 67	377088	0.01
chr10_33530135_33530286	0.01	NRP1	neuropilin 1	22422	0.19
chr6_11229774_11229925	0.01	NEDD9	neural precursor cell expressed, developmentally down-regulated 9	3042	0.32
chr12_95009320_95010015	0.01	TMCC3	transmembrane and coiled-coil domain family 3	170	0.97
chr6_16200733_16201077	0.01	ENSG00000251831	.	4340	0.21
chr2_237878607_237878758	0.01	ENSG00000202341	.	45266	0.17
chr6_151409287_151409438	0.01	RP1-292B18.3		32169	0.16
chr13_99930587_99930738	0.01	GPR18	G protein-coupled receptor 18	16664	0.18
chr12_80322059_80322210	0.01	PPP1R12A	protein phosphatase 1, regulatory subunit 12A	6361	0.21
chr8_105655635_105655790	0.01	RP11-127H5.1	Uncharacterized protein	52751	0.14
chr15_43541860_43542154	0.01	ENSG00000202211	.	2129	0.22
chr8_129879414_129879565	0.01	ENSG00000221351	.	47449	0.2
chr1_56762365_56762516	0.01	ENSG00000223307	.	80650	0.12
chr2_54827541_54827692	0.01	SPTBN1	spectrin, beta, non-erythrocytic 1	42085	0.13
chr7_101688653_101689251	0.01	CTA-357J21.1		12649	0.24
chr4_82134488_82134639	0.01	PRKG2	protein kinase, cGMP-dependent, type II	1625	0.48
chr6_106280114_106280265	0.01	ENSG00000200198	.	72059	0.13
chr7_121945437_121945668	0.01	FEZF1-AS1	FEZF1 antisense RNA 1	548	0.63
chr7_2439740_2440019	0.01	CHST12	carbohydrate (chondroitin 4) sulfotransferase 12	3344	0.25
chr13_30497549_30497716	0.01	LINC00572	long intergenic non-protein coding RNA 572	3156	0.37
chr10_65558718_65559094	0.01	REEP3	receptor accessory protein 3	277783	0.01
chr14_35170020_35170171	0.01	CFL2	cofilin 2 (muscle)	12939	0.18
chr6_139866897_139867163	0.01	CITED2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	171273	0.04
chr10_124254663_124255115	0.01	HTRA1	HtrA serine peptidase 1	11318	0.2
chr17_37050262_37050413	0.01	RP1-56K13.2		10516	0.1
chr1_232021274_232021425	0.01	DISC1-IT1	DISC1 intronic transcript 1 (non-protein coding)	40231	0.21
chr15_37075326_37075477	0.01	C15orf41	chromosome 15 open reading frame 41	27255	0.23
chr5_58676265_58676426	0.01	PDE4D	phosphodiesterase 4D, cAMP-specific	23544	0.28
chr15_67399699_67399853	0.01	SMAD3	SMAD family member 3	8759	0.25
chr19_48219590_48219888	0.01	EHD2	EH-domain containing 2	3060	0.19
chr12_16759185_16759513	0.01	LMO3	LIM domain only 3 (rhombotin-like 2)	116	0.98
chr4_25238322_25238473	0.01	PI4K2B	phosphatidylinositol 4-kinase type 2 beta	2800	0.34
chr3_14476500_14476651	0.01	SLC6A6	solute carrier family 6 (neurotransmitter transporter), member 6	2397	0.35
chr11_134009594_134009775	0.01	NCAPD3	non-SMC condensin II complex, subunit D3	28683	0.16
chr4_16723232_16723461	0.01	LDB2	LIM domain binding 2	47410	0.2
chr7_18794470_18794725	0.01	ENSG00000222164	.	53305	0.17
chr17_65430092_65430384	0.01	ENSG00000244610	.	23168	0.12
chr5_179757441_179757592	0.01	GFPT2	glutamine-fructose-6-phosphate transaminase 2	1132	0.52
chr9_89891784_89891968	0.01	ENSG00000212421	.	16511	0.28
chr3_29800003_29800421	0.01	RBMS3-AS2	RBMS3 antisense RNA 2	115912	0.07
chr15_48959812_48960090	0.01	FBN1	fibrillin 1	21905	0.23
chr11_128457327_128457522	0.01	ETS1	v-ets avian erythroblastosis virus E26 oncogene homolog 1	29	0.98
chr4_186704181_186704332	0.01	SORBS2	sorbin and SH3 domain containing 2	7190	0.26
chr13_72402750_72402901	0.01	DACH1	dachshund homolog 1 (Drosophila)	38082	0.23
chrX_47056180_47056331	0.01	UBA1	ubiquitin-like modifier activating enzyme 1	343	0.82
chr14_57276490_57276707	0.01	OTX2	orthodenticle homeobox 2	568	0.71
chr2_144855004_144855155	0.01	GTDC1	glycosyltransferase-like domain containing 1	138225	0.05
chr2_101840427_101840591	0.01	CNOT11	CCR4-NOT transcription complex, subunit 11	28755	0.16
chr21_17882200_17882351	0.01	ENSG00000207638	.	29134	0.19
chr7_30357859_30358186	0.01	ENSG00000207771	.	28612	0.17
chr16_3333511_3334475	0.01	ZNF263	zinc finger protein 263	38	0.95
chr15_99864560_99864718	0.01	AC022819.2	Uncharacterized protein	4811	0.23
chr12_91720658_91720809	0.01	DCN	decorin	143833	0.05
chr3_149298860_149299373	0.01	WWTR1	WW domain containing transcription regulator 1	5077	0.23
chr5_138060722_138060873	0.01	CTNNA1	catenin (cadherin-associated protein), alpha 1, 102kDa	27989	0.15
chr1_31500523_31500674	0.01	PUM1	pumilio RNA-binding family member 1	32647	0.16
chr7_102083951_102084102	0.01	ORAI2	ORAI calcium release-activated calcium modulator 2	7280	0.09
chr3_171024511_171024705	0.01	TNIK	TRAF2 and NCK interacting kinase	81108	0.1
chr14_71609169_71609320	0.01	PCNX	pecanex homolog (Drosophila)	33507	0.21
chr4_19852357_19852510	0.01	SLIT2	slit homolog 2 (Drosophila)	402450	0.01
chr18_53214040_53214242	0.01	TCF4	transcription factor 4	36141	0.18
chr17_5692957_5693108	0.01	WSCD1	WSC domain containing 1	16786	0.27
chr8_42123666_42123817	0.01	RP11-231D20.2		525	0.74
chr2_13059353_13059504	0.01	ENSG00000264370	.	181935	0.03
chr9_129896025_129896176	0.01	ANGPTL2	angiopoietin-like 2	10938	0.23
chr3_196352166_196352317	0.01	LINC01063	long intergenic non-protein coding RNA 1063	7217	0.14
chr12_104973868_104974019	0.01	CHST11	carbohydrate (chondroitin 4) sulfotransferase 11	8683	0.24
chr6_112542856_112543007	0.01	RP11-506B6.6		14363	0.17
chr3_156423919_156424189	0.01	TIPARP	TCDD-inducible poly(ADP-ribose) polymerase	25099	0.2
chr11_61159610_61160825	0.01	TMEM216	transmembrane protein 216	352	0.79