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ENCODE: H3K4me3 ChIP-Seq of primary human cells

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CREMA is a free online tool that recognizes most important transcription factors that change the chromatin state across different samples.

Results for GLIS1

Z-value: 0.16

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Transcription factors associated with GLIS1

Gene Symbol	Gene ID	Gene Info
GLIS1 Ensembl NCBI GeneCards UniProt	ENSG00000174332.3	GLIS1

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

CRE	Gene	Distance	Association probability	Pearson corr. coef.	P-value	Plot
GLIS1	chr1_54205372_54205532	5575	0.204329	-0.69	4.1e-02	Click!
GLIS1	chr1_54203045_54203196	3243	0.245145	-0.59	9.7e-02	Click!
GLIS1	chr1_54202397_54202548	2595	0.275475	-0.54	1.3e-01	Click!
GLIS1	chr1_54205007_54205362	5307	0.206770	-0.54	1.3e-01	Click!
GLIS1	chr1_54195063_54195214	4739	0.217334	-0.44	2.4e-01	Click!

Activity of the GLIS1 motif across conditions

Conditions sorted by the z-value of the GLIS1 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE)	Target Score	Top associated gene	Gene Info	Distance of CRE to TSS	CRE/Gene association probability
chr18_11751659_11751810	0.08	GNAL	guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	227	0.94
chr11_1593572_1594262	0.08	KRTAP5-AS1	KRTAP5-1/KRTAP5-2 antisense RNA 1	54	0.92
chr18_60825688_60825839	0.06	RP11-299P2.1		7210	0.25
chr1_118156630_118156781	0.06	FAM46C	family with sequence similarity 46, member C	8149	0.22
chr7_151119334_151119485	0.06	RP4-555L14.4		5360	0.12
chr4_185185188_185185495	0.06	ENSG00000221523	.	3243	0.26
chr12_58290122_58290785	0.05	XRCC6BP1	XRCC6 binding protein 1	44907	0.08
chr10_103539328_103539744	0.05	NPM3	nucleophosmin/nucleoplasmin 3	3634	0.18
chr19_7599221_7599435	0.03	PNPLA6	patatin-like phospholipase domain containing 6	75	0.94
chr8_29120281_29120556	0.02	KIF13B	kinesin family member 13B	172	0.94
chr5_150520697_150520848	0.02	ANXA6	annexin A6	429	0.85
chr16_58059170_58059939	0.02	MMP15	matrix metallopeptidase 15 (membrane-inserted)	84	0.96
chr11_45201780_45202121	0.02	PRDM11	PR domain containing 11	1478	0.49
chr17_80655275_80656143	0.02	RAB40B	RAB40B, member RAS oncogene family	829	0.47
chr8_11627244_11627926	0.01	NEIL2	nei endonuclease VIII-like 2 (E. coli)	337	0.84
chr14_105668576_105668727	0.01	BRF1	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	20231	0.14
chr15_43881579_43882371	0.01	PPIP5K1	diphosphoinositol pentakisphosphate kinase 1	165	0.91
chr7_56183478_56183932	0.01	NUPR1L	nuclear protein, transcriptional regulator, 1-like	388	0.78
chr1_59250006_59250701	0.01	JUN	jun proto-oncogene	568	0.79
chr7_73498327_73498772	0.01	LIMK1	LIM domain kinase 1	279	0.91
chr4_107237686_107238085	0.01	TBCK	TBC1 domain containing kinase	24	0.75
chr1_45986537_45987565	0.01	PRDX1	peroxiredoxin 1	475	0.74
chr19_1274680_1275381	0.01	C19orf24	chromosome 19 open reading frame 24	4	0.94
chr9_136580274_136580425	0.01	SARDH	sarcosine dehydrogenase	11526	0.2
chr2_113033235_113033667	0.01	ZC3H6	zinc finger CCCH-type containing 6	273	0.91
chr11_68671451_68672010	0.01	IGHMBP2	immunoglobulin mu binding protein 2	365	0.53
chrX_40027620_40027771	0.01	BCOR	BCL6 corepressor	8878	0.31
chr1_236958581_236959780	0.01	MTR	5-methyltetrahydrofolate-homocysteine methyltransferase	198	0.96
chr2_101197927_101198078	0.01	ENSG00000238328	.	4071	0.2
chr5_98109571_98109848	0.01	RGMB	repulsive guidance molecule family member b	370	0.62
chr20_25565265_25566139	0.01	NINL	ninein-like	451	0.81
chr16_1030392_1030543	0.01	AC009041.2		785	0.33
chr18_73132_73519	0.01	RP11-683L23.1	Tubulin beta-8 chain-like protein LOC260334	23085	0.21
chr6_24495335_24495996	0.01	ALDH5A1	aldehyde dehydrogenase 5 family, member A1	468	0.82
chr8_103751111_103751305	0.01	ENSG00000266799	.	5261	0.26
chr8_145027093_145027557	0.01	PLEC	plectin	763	0.48
chr19_55684291_55685412	0.01	SYT5	synaptotagmin V	1083	0.28
chr15_43981291_43982067	0.01	CKMT1A	creatine kinase, mitochondrial 1A	3405	0.12
chr3_127319190_127319523	0.01	MCM2	minichromosome maintenance complex component 2	1411	0.36
chr12_122467875_122468026	0.00	BCL7A	B-cell CLL/lymphoma 7A	8158	0.22
chr3_50263691_50263973	0.00	GNAI2	guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2	108	0.94
chr1_241802726_241802968	0.00	OPN3	opsin 3	816	0.6
chr16_2739999_2740150	0.00	KCTD5	potassium channel tetramerization domain containing 5	7533	0.1
chr14_102783547_102783968	0.00	ZNF839	zinc finger protein 839	43	0.97
chr9_141044575_141045102	0.00	TUBBP5	tubulin, beta pseudogene 5	24659	0.23
chr10_74020790_74021082	0.00	DDIT4	DNA-damage-inducible transcript 4	12742	0.14
chr1_226111176_226111965	0.00	PYCR2	pyrroline-5-carboxylate reductase family, member 2	389	0.46
chr13_26761202_26761553	0.00	RNF6	ring finger protein (C3H2C3 type) 6	34463	0.2
chr19_44488058_44488547	0.00	ZNF155	zinc finger protein 155	41	0.95
chr13_95247882_95248356	0.00	TGDS	TDP-glucose 4,6-dehydratase	392	0.86
chr7_27225817_27225968	0.00	HOXA11-AS	HOXA11 antisense RNA	739	0.31
chr15_84033783_84034563	0.00	BNC1	basonuclin 1	80707	0.09
chr14_37116502_37116669	0.00	PAX9	paired box 9	10188	0.18
chr10_119610_120346	0.00	TUBB8	tubulin, beta 8 class VIII	24474	0.22
chr1_8763422_8763924	0.00	RERE	arginine-glutamic acid dipeptide (RE) repeats	395	0.9
chr12_26348226_26348487	0.00	SSPN	sarcospan	73	0.98
chr2_54198319_54198701	0.00	ACYP2	acylphosphatase 2, muscle type	265	0.72
chr11_61159610_61160825	0.00	TMEM216	transmembrane protein 216	352	0.79
chr14_89884489_89884712	0.00	FOXN3-AS1	FOXN3 antisense RNA 1	902	0.43
chr17_36908995_36909604	0.00	PSMB3	proteasome (prosome, macropain) subunit, beta type, 3	299	0.72
chr20_48838007_48838158	0.00	CEBPB	CCAAT/enhancer binding protein (C/EBP), beta	30706	0.18
chr12_111843881_111845308	0.00	SH2B3	SH2B adaptor protein 3	842	0.62
chr17_5388900_5389438	0.00	DERL2	derlin 2	313	0.57
chr3_177017776_177017927	0.00	TBL1XR1	transducin (beta)-like 1 X-linked receptor 1	102590	0.08
chr19_48896929_48897565	0.00	GRIN2D	glutamate receptor, ionotropic, N-methyl D-aspartate 2D	885	0.4