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ENCODE: H3K4me3 ChIP-Seq of primary human cells
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CREMA is a free online tool that recognizes most important transcription factors that change the chromatin state across different samples.

Results for HINFP1

Z-value: 0.56

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Transcription factors associated with HINFP1

Gene Symbol Gene ID Gene Info

Activity of the HINFP1 motif across conditions

Conditions sorted by the z-value of the HINFP1 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE) Target Score Top associated gene Gene Info Distance of CRE to TSS CRE/Gene association probability
chr2_30454378_30455881 0.45 LBH
limb bud and heart development
83
0.98
chr20_3994903_3996170 0.42 RNF24
ring finger protein 24
500
0.83
chr17_57408824_57410302 0.40 YPEL2
yippee-like 2 (Drosophila)
500
0.78
chr1_62784626_62784933 0.38 KANK4
KN motif and ankyrin repeat domains 4
193
0.95
chr2_96809842_96811219 0.38 DUSP2
dual specificity phosphatase 2
649
0.65
chr3_96531977_96533205 0.34 EPHA6
EPH receptor A6
834
0.76
chr7_26415747_26416790 0.34 AC004540.4

53
0.98
chr1_169454193_169456202 0.32 SLC19A2
solute carrier family 19 (thiamine transporter), member 2
28
0.98
chr16_67197260_67198336 0.31 HSF4
heat shock transcription factor 4
510
0.52
chr1_231297648_231298418 0.26 TRIM67
tripartite motif containing 67
175
0.95
chr20_708643_709189 0.24 SLC52A3
solute carrier family 52 (riboflavin transporter), member 3
40215
0.13
chr19_2251617_2252237 0.23 ENSG00000267021
.
1289
0.21
chr1_11724348_11725085 0.21 FBXO6
F-box protein 6
535
0.67
chr18_47017567_47018883 0.21 RPL17
ribosomal protein L17
15
0.51
chr20_35974122_35974616 0.20 SRC
v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog
188
0.96
chr17_79875057_79876036 0.20 SIRT7
sirtuin 7
524
0.46
chr10_62492315_62493446 0.20 ANK3
ankyrin 3, node of Ranvier (ankyrin G)
368
0.92
chr11_120894558_120895785 0.19 TBCEL
tubulin folding cofactor E-like
341
0.93
chr13_22032188_22033345 0.18 ZDHHC20
zinc finger, DHHC-type containing 20
648
0.76
chr22_24989005_24989426 0.18 FAM211B
family with sequence similarity 211, member B
185
0.9
chr3_196695819_196696888 0.17 PIGZ
phosphatidylinositol glycan anchor biosynthesis, class Z
611
0.66
chr8_69242814_69243988 0.17 C8orf34
chromosome 8 open reading frame 34
56
0.82
chr7_101460813_101461304 0.17 CUX1
cut-like homeobox 1
138
0.97
chr6_163833862_163834944 0.17 QKI
QKI, KH domain containing, RNA binding
1272
0.63
chr13_20766378_20767168 0.16 GJB2
gap junction protein, beta 2, 26kDa
264
0.91
chr12_90101448_90102652 0.15 ATP2B1
ATPase, Ca++ transporting, plasma membrane 1
558
0.78
chr3_160822448_160823114 0.15 B3GALNT1
beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)
43
0.67
chr4_187025490_187026623 0.15 FAM149A
family with sequence similarity 149, member A
175
0.94
chr18_12308279_12308732 0.15 TUBB6
tubulin, beta 6 class V
243
0.92
chr1_935525_936213 0.15 HES4
hes family bHLH transcription factor 4
317
0.77
chr1_236958581_236959780 0.14 MTR
5-methyltetrahydrofolate-homocysteine methyltransferase
198
0.96
chr10_123733982_123734880 0.14 NSMCE4A
non-SMC element 4 homolog A (S. cerevisiae)
158
0.96
chr2_71693301_71694189 0.13 DYSF
dysferlin
87
0.98
chr9_86595749_86596582 0.13 RMI1
RecQ mediated genome instability 1
452
0.51
chr16_84733607_84734797 0.13 USP10
ubiquitin specific peptidase 10
556
0.79
chr12_95942120_95942537 0.13 USP44
ubiquitin specific peptidase 44
246
0.94
chr9_131418722_131419532 0.13 WDR34
WD repeat domain 34
61
0.96
chr7_111201649_111202512 0.13 IMMP2L
IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)
100
0.98
chr19_13056666_13057332 0.13 RAD23A
RAD23 homolog A (S. cerevisiae)
293
0.71
chr20_1875023_1875335 0.12 SIRPA
signal-regulatory protein alpha
25
0.98
chrX_70150677_70150828 0.12 SLC7A3
solute carrier family 7 (cationic amino acid transporter, y+ system), member 3
194
0.95
chr6_100061682_100062402 0.12 PRDM13
PR domain containing 13
7436
0.19
chr10_50606076_50606780 0.11 DRGX
dorsal root ganglia homeobox
2931
0.27
chr6_1605443_1605730 0.11 FOXC1
forkhead box C1
5095
0.33
chr9_37034211_37034515 0.11 PAX5
paired box 5
260
0.93
chr13_67804057_67805835 0.11 PCDH9
protocadherin 9
478
0.9
chr1_110753494_110754182 0.11 KCNC4
potassium voltage-gated channel, Shaw-related subfamily, member 4
257
0.84
chr16_30216869_30217924 0.11 RP11-347C12.3
Uncharacterized protein
31
0.94
chr20_57465496_57466112 0.10 GNAS
GNAS complex locus
553
0.66
chr18_3262315_3263346 0.10 MYL12B
myosin, light chain 12B, regulatory
124
0.92
chr2_129079627_129080191 0.10 HS6ST1
heparan sulfate 6-O-sulfotransferase 1
3758
0.29
chr10_94822298_94822949 0.10 CYP26C1
cytochrome P450, family 26, subfamily C, polypeptide 1
1602
0.34
chr7_149156320_149157211 0.10 ZNF777
zinc finger protein 777
1449
0.45
chr16_718193_719247 0.09 RHOT2
ras homolog family member T2
511
0.45
chr5_131745958_131747299 0.09 C5orf56
chromosome 5 open reading frame 56
45
0.96
chr3_12910219_12910517 0.09 AC034198.7

18210
0.14
chr8_37620085_37620952 0.08 PROSC
proline synthetase co-transcribed homolog (bacterial)
400
0.79
chr6_108497513_108497836 0.07 NR2E1
nuclear receptor subfamily 2, group E, member 1
7707
0.18
chr2_71453255_71454205 0.07 PAIP2B
poly(A) binding protein interacting protein 2B
483
0.83
chr6_168720263_168720414 0.07 DACT2
dishevelled-binding antagonist of beta-catenin 2
52
0.98
chr17_27892819_27893926 0.07 ABHD15
abhydrolase domain containing 15
783
0.31
chr7_139875207_139876022 0.07 KDM7A
lysine (K)-specific demethylase 7A
1127
0.39
chr17_40202025_40202687 0.07 CTD-2132N18.2

7221
0.11
chr7_100081068_100081412 0.07 ENSG00000266372
.
226
0.55
chr7_92218956_92219793 0.07 FAM133B
family with sequence similarity 133, member B
10
0.98
chr6_30457259_30457905 0.07 HLA-E
major histocompatibility complex, class I, E
338
0.84
chr6_45631346_45631892 0.06 ENSG00000252738
.
17778
0.29
chr10_112403107_112403970 0.06 RBM20
RNA binding motif protein 20
617
0.55
chr20_3827532_3828225 0.06 MAVS
mitochondrial antiviral signaling protein
388
0.8
chr1_27687344_27687533 0.06 MAP3K6
mitogen-activated protein kinase kinase kinase 6
3004
0.16
chr10_21823798_21823949 0.06 MLLT10
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
195
0.92
chr19_4374282_4374693 0.06 SH3GL1
SH3-domain GRB2-like 1
5802
0.08
chr7_132260669_132261651 0.05 PLXNA4
plexin A4
69
0.98
chr4_186130212_186131033 0.05 KIAA1430
KIAA1430
36
0.92
chr22_20306851_20307537 0.05 DGCR6L
DiGeorge syndrome critical region gene 6-like
338
0.74
chr14_56585152_56585591 0.05 PELI2
pellino E3 ubiquitin protein ligase family member 2
278
0.94
chr8_143533593_143534231 0.05 BAI1
brain-specific angiogenesis inhibitor 1
3121
0.27
chr2_178128520_178129352 0.05 AC079305.10

151
0.76
chr18_29264680_29264911 0.05 B4GALT6
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6
109
0.91
chr15_66585571_66586039 0.05 DIS3L
DIS3 mitotic control homolog (S. cerevisiae)-like
80
0.53
chr11_70962576_70962972 0.05 SHANK2
SH3 and multiple ankyrin repeat domains 2
849
0.72
chr4_87812935_87814058 0.05 C4orf36
chromosome 4 open reading frame 36
52
0.98
chr6_29894399_29894823 0.05 HLA-A
major histocompatibility complex, class I, A
14426
0.18
chr6_11043780_11044551 0.05 ELOVL2-AS1
ELOVL2 antisense RNA 1
172
0.73
chr1_156829720_156830506 0.05 NTRK1
neurotrophic tyrosine kinase, receptor, type 1
494
0.64
chr17_11144173_11144324 0.05 SHISA6
shisa family member 6
332
0.91
chr1_233463556_233464041 0.05 MLK4
Mitogen-activated protein kinase kinase kinase MLK4
284
0.94
chr18_11981851_11982483 0.04 IMPA2
inositol(myo)-1(or 4)-monophosphatase 2
498
0.77
chrY_21154472_21155007 0.04 ENSG00000252766
.
26234
0.25
chr2_136289143_136290038 0.04 R3HDM1
R3H domain containing 1
503
0.62
chr20_52209104_52210193 0.04 ZNF217
zinc finger protein 217
730
0.68
chr17_77817761_77818338 0.04 CBX4
chromobox homolog 4
4821
0.18
chr17_16487582_16488116 0.04 ZNF287
zinc finger protein 287
15329
0.16
chr1_207082522_207083417 0.04 IL24
interleukin 24
11791
0.14
chr6_84569350_84570131 0.03 CYB5R4
cytochrome b5 reductase 4
365
0.9
chr19_50354346_50354967 0.03 PTOV1
prostate tumor overexpressed 1
174
0.58
chr17_40829888_40830324 0.03 PLEKHH3
pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
1058
0.27
chr1_29448339_29449190 0.03 TMEM200B
transmembrane protein 200B
249
0.93
chr11_450302_450786 0.03 PTDSS2
phosphatidylserine synthase 2
264
0.82
chr7_107220684_107221346 0.03 BCAP29
B-cell receptor-associated protein 29
102
0.86
chr7_96635926_96636202 0.03 DLX6
distal-less homeobox 6
673
0.48
chr3_14644257_14644427 0.03 AC090952.5

46597
0.13
chr4_109093413_109093782 0.03 ENSG00000232021
.
258
0.93
chr16_58059170_58059939 0.03 MMP15
matrix metallopeptidase 15 (membrane-inserted)
84
0.96
chr2_33171552_33172146 0.03 LTBP1
latent transforming growth factor beta binding protein 1
190
0.93
chr3_182896879_182897541 0.03 LAMP3
lysosomal-associated membrane protein 3
15583
0.21
chrX_49033425_49033576 0.03 PLP2
proteolipid protein 2 (colonic epithelium-enriched)
5227
0.09
chr18_32956679_32957498 0.03 ZNF396
zinc finger protein 396
186
0.96
chr2_232526625_232527001 0.03 ENSG00000239202
.
15829
0.16
chr20_32077934_32078551 0.02 CBFA2T2
core-binding factor, runt domain, alpha subunit 2; translocated to, 2
319
0.89
chr2_234263629_234264304 0.02 DGKD
diacylglycerol kinase, delta 130kDa
812
0.51
chr12_58129779_58130334 0.02 AGAP2
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
1563
0.16
chr6_159360525_159360963 0.02 ENSG00000223191
.
13141
0.19
chr10_8091983_8093018 0.02 GATA3
GATA binding protein 3
4156
0.36
chr5_159546809_159547203 0.02 PWWP2A
PWWP domain containing 2A
576
0.75
chr3_52016673_52017699 0.02 ABHD14B
abhydrolase domain containing 14B
239
0.49
chr17_17603690_17604249 0.02 RAI1
retinoic acid induced 1
18160
0.17
chr5_174871055_174871780 0.02 DRD1
dopamine receptor D1
206
0.95
chr5_92906290_92906587 0.02 ENSG00000237187
.
61
0.98
chr12_133532729_133533161 0.02 ZNF605
zinc finger protein 605
53
0.49
chr1_10458416_10458839 0.02 PGD
phosphogluconate dehydrogenase
22
0.96
chr3_139654401_139654885 0.02 CLSTN2
calsyntenin 2
616
0.84
chr11_805194_805716 0.02 PIDD
p53-induced death domain protein
210
0.8
chr19_12780320_12781072 0.02 WDR83
WD repeat domain 83
179
0.62
chr5_139028499_139029117 0.02 CXXC5
CXXC finger protein 5
290
0.92
chr2_237087502_237088103 0.02 GBX2
gastrulation brain homeobox 2
10790
0.15
chr9_139439215_139440028 0.02 NOTCH1
notch 1
693
0.35
chr13_21635697_21635989 0.02 LATS2
large tumor suppressor kinase 2
157
0.95
chr12_109747933_109748276 0.02 FOXN4
forkhead box N4
1079
0.55
chr7_32535106_32535501 0.02 AVL9
AVL9 homolog (S. cerevisiase)
19
0.88
chr1_224622519_224623397 0.02 WDR26
WD repeat domain 26
957
0.59
chr12_27932510_27932994 0.02 KLHL42
kelch-like family member 42
201
0.87
chr6_24720330_24720995 0.02 C6orf62
chromosome 6 open reading frame 62
42
0.97
chr13_28528843_28528994 0.02 ATP5EP2
ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2
9575
0.14
chr20_34189521_34189992 0.02 SPAG4
sperm associated antigen 4
14058
0.11
chr7_75911448_75912023 0.01 SRRM3
serine/arginine repetitive matrix 3
197
0.93
chr14_45366753_45367297 0.01 C14orf28
chromosome 14 open reading frame 28
487
0.59
chr1_148176495_148177244 0.01 PPIAL4D
peptidylprolyl isomerase A (cyclophilin A)-like 4D
25667
0.21
chr5_6714492_6714756 0.01 PAPD7
PAP associated domain containing 7
94
0.98
chr11_67275372_67275646 0.01 CDK2AP2
cyclin-dependent kinase 2 associated protein 2
53
0.93
chr12_19283254_19284293 0.01 PLEKHA5
pleckstrin homology domain containing, family A member 5
1043
0.58
chr5_129239637_129240094 0.01 CHSY3
chondroitin sulfate synthase 3
300
0.88
chr11_64901308_64901962 0.01 SYVN1
synovial apoptosis inhibitor 1, synoviolin
265
0.76
chr16_75033808_75034560 0.01 ZNRF1
zinc and ring finger 1, E3 ubiquitin protein ligase
941
0.6
chr7_27179265_27179416 0.01 HOXA3
homeobox A3
485
0.41
chrX_129299242_129299778 0.01 AIFM1
apoptosis-inducing factor, mitochondrion-associated, 1
128
0.96
chr19_6767133_6767491 0.01 SH2D3A
SH2 domain containing 3A
134
0.93
chr6_18277489_18278102 0.01 ENSG00000199715
.
4298
0.21
chr12_6833255_6834039 0.01 COPS7A
COP9 signalosome subunit 7A
175
0.85
chr4_190936109_190936296 0.01 ENSG00000199572
.
91
0.95
chr1_24829331_24829634 0.01 RCAN3
RCAN family member 3
95
0.97
chr7_157072082_157072490 0.01 ENSG00000266453
.
26201
0.21
chr17_46674549_46675551 0.01 HOXB-AS3
HOXB cluster antisense RNA 3
1249
0.2
chr2_220416827_220417484 0.01 ENSG00000265252
.
3286
0.09
chr17_56234195_56234709 0.01 OR4D1
olfactory receptor, family 4, subfamily D, member 1
1958
0.26
chr10_119135118_119135768 0.01 PDZD8
PDZ domain containing 8
465
0.84
chr11_68228271_68228585 0.01 PPP6R3
protein phosphatase 6, regulatory subunit 3
147
0.96
chr17_12920409_12921278 0.01 ELAC2
elaC ribonuclease Z 2
64
0.97
chr11_119454980_119455308 0.01 RP11-196E1.3

23991
0.19
chr17_38296734_38297043 0.01 CASC3
cancer susceptibility candidate 3
207
0.9
chr5_5421590_5422497 0.01 KIAA0947
KIAA0947
764
0.8
chr3_141120790_141121159 0.01 ZBTB38
zinc finger and BTB domain containing 38
217
0.95
chr1_165796835_165797193 0.00 TMCO1
transmembrane and coiled-coil domains 1
22
0.51
chr19_4304444_4304595 0.00 FSD1
fibronectin type III and SPRY domain containing 1
78
0.93
chr7_74306205_74306628 0.00 STAG3L2
stromal antigen 3-like 2 (pseudogene)
259
0.91
chr19_16999844_17000017 0.00 F2RL3
coagulation factor II (thrombin) receptor-like 3
71
0.95
chr7_26192093_26192429 0.00 NFE2L3
nuclear factor, erythroid 2-like 3
401
0.85
chr3_50358230_50358862 0.00 HYAL2
hyaluronoglucosaminidase 2
34
0.93
chr16_77224093_77224603 0.00 MON1B
MON1 secretory trafficking family member B
384
0.86
chr6_157801166_157801713 0.00 ZDHHC14
zinc finger, DHHC-type containing 14
726
0.76
chr16_30662970_30663539 0.00 PRR14
proline rich 14
743
0.43
chr8_56987192_56987600 0.00 CTA-397H3.3

245
0.54
chr12_120632090_120632489 0.00 GCN1L1
GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
224
0.88
chr7_89783488_89783754 0.00 STEAP1
six transmembrane epithelial antigen of the prostate 1
68
0.97
chr22_18893815_18894459 0.00 DGCR6
DiGeorge syndrome critical region gene 6
271
0.91
chr1_43232974_43233556 0.00 C1orf50
chromosome 1 open reading frame 50
288
0.65
chr14_23526484_23526858 0.00 CDH24
cadherin 24, type 2
76
0.93

Histogram of CRE-TSS distances for CREs targeted by :

Histogram of

Rank distribution of CRE target scores:

Histogram of target CRE score.

Distribution of target CREs across different genomic regions:

Weighted Piechart of Weighted Piechart of Weighted Piechart of

Network of associatons between targets according to the STRING database.

StringDB image

First level regulatory network of HINFP1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0035461 vitamin transmembrane transport(GO:0035461)
0.1 0.2 GO:0033622 integrin activation(GO:0033622)
0.0 0.1 GO:0051573 negative regulation of histone H3-K9 methylation(GO:0051573)
0.0 0.2 GO:0000301 retrograde transport, vesicle recycling within Golgi(GO:0000301)
0.0 0.1 GO:0050667 homocysteine metabolic process(GO:0050667)
0.0 0.1 GO:0016264 gap junction assembly(GO:0016264)
0.0 0.1 GO:0090231 regulation of spindle checkpoint(GO:0090231)
0.0 0.1 GO:0045897 regulation of transcription during mitosis(GO:0045896) positive regulation of transcription during mitosis(GO:0045897)
0.0 0.2 GO:0033169 histone H3-K9 demethylation(GO:0033169)
0.0 0.2 GO:0006516 glycoprotein catabolic process(GO:0006516)
0.0 0.2 GO:0001706 endoderm formation(GO:0001706)
0.0 0.1 GO:0060340 positive regulation of type I interferon-mediated signaling pathway(GO:0060340)
0.0 0.0 GO:0016115 diterpenoid catabolic process(GO:0016103) terpenoid catabolic process(GO:0016115) retinoic acid catabolic process(GO:0034653)
0.0 0.0 GO:0072367 regulation of lipid transport by regulation of transcription from RNA polymerase II promoter(GO:0072367)
0.0 0.1 GO:0007191 adenylate cyclase-activating dopamine receptor signaling pathway(GO:0007191)
0.0 0.1 GO:0045070 positive regulation of viral genome replication(GO:0045070)
0.0 0.1 GO:0009312 oligosaccharide biosynthetic process(GO:0009312)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0032588 trans-Golgi network membrane(GO:0032588)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0045118 azole transporter activity(GO:0045118) azole transmembrane transporter activity(GO:1901474)
0.0 0.2 GO:0008330 protein tyrosine/threonine phosphatase activity(GO:0008330)
0.0 0.1 GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898)
0.0 0.1 GO:0000064 L-ornithine transmembrane transporter activity(GO:0000064)
0.0 0.1 GO:0031628 opioid receptor binding(GO:0031628)
0.0 0.1 GO:0000900 translation repressor activity, nucleic acid binding(GO:0000900)
0.0 0.3 GO:0005003 ephrin receptor activity(GO:0005003)
0.0 0.0 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)
0.0 0.1 GO:0005388 calcium-transporting ATPase activity(GO:0005388)
0.0 0.1 GO:0008499 UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity(GO:0008499)
0.0 0.0 GO:0008401 retinoic acid 4-hydroxylase activity(GO:0008401)
0.0 0.0 GO:0008934 inositol monophosphate 1-phosphatase activity(GO:0008934) inositol monophosphate phosphatase activity(GO:0052834)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 ST STAT3 PATHWAY STAT3 Pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME SIGNAL REGULATORY PROTEIN SIRP FAMILY INTERACTIONS Genes involved in Signal regulatory protein (SIRP) family interactions