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ENCODE: H3K4me3 ChIP-Seq of primary human cells

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CREMA is a free online tool that recognizes most important transcription factors that change the chromatin state across different samples.

Results for MYOD1

Z-value: 0.28

Motif logo

Transcription factors associated with MYOD1

Gene Symbol	Gene ID	Gene Info
MYOD1 Ensembl NCBI GeneCards UniProt	ENSG00000129152.3	MYOD1

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

CRE	Gene	Distance	Association probability	Pearson corr. coef.	P-value	Plot
MYOD1	chr11_17741506_17741657	466	0.817085	0.66	5.4e-02	Click!
MYOD1	chr11_17742116_17742267	1076	0.521110	0.34	3.7e-01	Click!

Activity of the MYOD1 motif across conditions

Conditions sorted by the z-value of the MYOD1 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE)	Target Score	Top associated gene	Gene Info	Distance of CRE to TSS	CRE/Gene association probability
chr3_48630851_48631002	0.04	COL7A1	collagen, type VII, alpha 1	1667	0.2
chr16_56945671_56945822	0.04	HERPUD1	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	20214	0.11
chr5_166722273_166722538	0.04	CTB-180C19.1		1127	0.47
chr22_27041102_27041357	0.04	CRYBA4	crystallin, beta A4	23301	0.17
chr11_23250751_23251044	0.04	ENSG00000264478	.	242362	0.02
chr10_104420612_104420763	0.03	TRIM8	tripartite motif containing 8	16043	0.16
chr3_14197843_14197994	0.03	AC093495.4		11428	0.15
chr10_3895167_3895318	0.03	KLF6	Kruppel-like factor 6	67769	0.12
chr15_40632587_40633009	0.03	C15orf52	chromosome 15 open reading frame 52	370	0.7
chr3_129512823_129512974	0.03	TMCC1	transmembrane and coiled-coil domain family 1	361	0.87
chr16_88316429_88316580	0.03	ZNF469	zinc finger protein 469	177375	0.03
chr17_39779390_39779541	0.03	KRT17	keratin 17	55	0.95
chr17_45929276_45929427	0.03	SP6	Sp6 transcription factor	792	0.47
chr1_20707585_20707736	0.03	RP4-745E8.2		57980	0.11
chr1_27709656_27709807	0.03	CD164L2	CD164 sialomucin-like 2	62	0.96
chr3_66023514_66023733	0.03	MAGI1	membrane associated guanylate kinase, WW and PDZ domain containing 1	360	0.9
chr1_224697591_224697742	0.03	WDR26	WD repeat domain 26	72931	0.09
chr9_94633472_94633623	0.03	ROR2	receptor tyrosine kinase-like orphan receptor 2	77615	0.11
chr12_125105824_125106359	0.03	NCOR2	nuclear receptor corepressor 2	54081	0.17
chr5_150021079_150021262	0.03	SYNPO	synaptopodin	930	0.5
chr14_105536231_105536382	0.03	GPR132	G protein-coupled receptor 132	4524	0.22
chr17_81031335_81031486	0.03	METRNL	meteorin, glial cell differentiation regulator-like	6157	0.23
chr13_22257522_22257673	0.03	FGF9	fibroblast growth factor 9	12075	0.25
chr9_127622833_127623140	0.03	RPL35	ribosomal protein L35	1208	0.3
chr11_84028149_84028546	0.03	DLG2	discs, large homolog 2 (Drosophila)	35	0.99
chr15_33300884_33301035	0.03	ENSG00000212415	.	38031	0.18
chr12_113797502_113797653	0.03	SLC8B1	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	279	0.85
chr9_117050441_117050592	0.03	ORM1	orosomucoid 1	34820	0.15
chr9_34651822_34652525	0.03	IL11RA	interleukin 11 receptor, alpha	16	0.94
chr10_120739922_120740073	0.03	RP11-498J9.2		23399	0.15
chr17_35278104_35278255	0.03	RP11-445F12.1		15742	0.13
chr5_131594297_131594770	0.03	PDLIM4	PDZ and LIM domain 4	1133	0.45
chr4_144435743_144436361	0.03	SMARCA5-AS1	SMARCA5 antisense RNA 1	264	0.9
chr3_159572270_159572495	0.03	SCHIP1	schwannomin interacting protein 1	1654	0.39
chr11_115630920_115631071	0.03	ENSG00000239153	.	133092	0.06
chr11_6948113_6948733	0.03	ZNF215	zinc finger protein 215	670	0.62
chr12_122235813_122236047	0.03	RHOF	ras homolog family member F (in filopodia)	2653	0.22
chr11_614388_614539	0.03	IRF7	interferon regulatory factor 7	1163	0.26
chr2_131672660_131672811	0.03	ARHGEF4	Rho guanine nucleotide exchange factor (GEF) 4	1489	0.42
chr16_70729706_70729857	0.03	VAC14	Vac14 homolog (S. cerevisiae)	285	0.88
chr11_20048907_20049058	0.03	NAV2	neuron navigator 2	4346	0.24
chr16_48641622_48641773	0.03	N4BP1	NEDD4 binding protein 1	2423	0.29
chr10_99331899_99332050	0.03	ANKRD2	ankyrin repeat domain 2 (stretch responsive muscle)	224	0.89
chrX_38729814_38730081	0.03	MID1IP1-AS1	MID1IP1 antisense RNA 1	66811	0.12
chr17_73717686_73717837	0.03	ITGB4	integrin, beta 4	184	0.9
chr9_130908187_130908338	0.02	LCN2	lipocalin 2	3088	0.12
chr6_155568937_155569088	0.02	RP11-477D19.2		8846	0.2
chr12_6484544_6484695	0.02	LTBR	lymphotoxin beta receptor (TNFR superfamily, member 3)	24	0.57
chr11_46696724_46696875	0.02	ATG13	autophagy related 13	11249	0.13
chr5_171380881_171381289	0.02	FBXW11	F-box and WD repeat domain containing 11	23675	0.23
chr9_139574265_139574564	0.02	AGPAT2	1-acylglycerol-3-phosphate O-acyltransferase 2	7434	0.08
chr15_93344718_93345000	0.02	CTD-2313J17.1		6938	0.18
chr14_105813436_105813587	0.02	PACS2	phosphofurin acidic cluster sorting protein 2	10749	0.15
chr16_1153076_1153227	0.02	C1QTNF8	C1q and tumor necrosis factor related protein 8	6907	0.13
chr12_6420537_6420688	0.02	PLEKHG6	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	513	0.73
chr5_139721787_139722024	0.02	HBEGF	heparin-binding EGF-like growth factor	4283	0.14
chr6_154781868_154782019	0.02	CNKSR3	CNKSR family member 3	17682	0.28
chr2_127822596_127822803	0.02	BIN1	bridging integrator 1	41878	0.16
chr5_106904194_106904345	0.02	EFNA5	ephrin-A5	102059	0.08
chr17_55131735_55131912	0.02	AKAP1	A kinase (PRKA) anchor protein 1	30630	0.13
chr4_90768990_90769141	0.02	SNCA	synuclein, alpha (non A4 component of amyloid precursor)	9599	0.21
chr18_20046308_20046621	0.02	CTAGE1	cutaneous T-cell lymphoma-associated antigen 1	48586	0.17
chr14_70346080_70346697	0.02	SMOC1	SPARC related modular calcium binding 1	245	0.95
chr10_75346557_75346885	0.02	USP54	ubiquitin specific peptidase 54	4375	0.16
chr12_110723019_110723319	0.02	ATP2A2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	3683	0.28
chr16_85075183_85075477	0.02	KIAA0513	KIAA0513	13920	0.21
chr17_46908918_46909142	0.02	CALCOCO2	calcium binding and coiled-coil domain 2	440	0.75
chr4_95987148_95987299	0.02	BMPR1B	bone morphogenetic protein receptor, type IB	14393	0.32
chr3_112964540_112964768	0.02	BOC	BOC cell adhesion associated, oncogene regulated	29456	0.19
chr1_43151193_43151344	0.02	YBX1	Y box binding protein 1	2610	0.24
chr18_8799798_8800187	0.02	RP11-674N23.4		1662	0.4
chr11_64012846_64013110	0.02	PPP1R14B	protein phosphatase 1, regulatory (inhibitor) subunit 14B	310	0.51
chr12_49883832_49884081	0.02	KCNH3	potassium voltage-gated channel, subfamily H (eag-related), member 3	48984	0.1
chr8_103770507_103770658	0.02	ENSG00000266799	.	24635	0.2
chr2_221145028_221145179	0.02	ENSG00000221199	.	88504	0.1
chr5_92585448_92586206	0.02	ENSG00000237187	.	172292	0.04
chr2_220115453_220115604	0.02	TUBA4A	tubulin, alpha 4a	2187	0.12
chr19_19052300_19052451	0.02	HOMER3	homer homolog 3 (Drosophila)	305	0.76
chr20_2795159_2795349	0.02	TMEM239	CDNA FLJ26142 fis, clone TST04526; Transmembrane protein 239; Uncharacterized protein	360	0.47
chr11_1567498_1567649	0.02	DUSP8	dual specificity phosphatase 8	19593	0.12
chr1_209393485_209393990	0.02	ENSG00000230937	.	211741	0.02
chr1_22463869_22464020	0.02	WNT4	wingless-type MMTV integration site family, member 4	5515	0.23
chr16_3057908_3058074	0.02	LA16c-380H5.2		2889	0.08
chr6_41673906_41674057	0.02	TFEB	transcription factor EB	303	0.85
chr3_62247222_62247373	0.02	ENSG00000241472	.	1118	0.62
chr11_46708337_46708488	0.02	ARHGAP1	Rho GTPase activating protein 1	9237	0.13
chr10_126429198_126429868	0.02	FAM53B	family with sequence similarity 53, member B	2006	0.29
chr5_154209933_154210084	0.02	ENSG00000263361	.	990	0.5
chr8_55048378_55048680	0.02	MRPL15	mitochondrial ribosomal protein L15	692	0.71
chr10_11873191_11873480	0.02	PROSER2	proline and serine-rich protein 2	347	0.9
chr2_43242041_43242199	0.02	ENSG00000207087	.	76512	0.11
chr13_109924709_109925156	0.02	MYO16-AS1	MYO16 antisense RNA 1	71101	0.13
chr17_38178315_38178466	0.02	MED24	mediator complex subunit 24	1023	0.38
chr9_130180174_130180325	0.02	ZNF79	zinc finger protein 79	6412	0.14
chr7_127804563_127804714	0.02	ENSG00000207705	.	43286	0.14
chr1_197885819_197885970	0.02	LHX9	LIM homeobox 9	595	0.8
chr1_95005094_95005314	0.02	F3	coagulation factor III (thromboplastin, tissue factor)	1989	0.46
chr1_46654018_46654169	0.02	POMGNT1	protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)	9054	0.12
chr3_50203978_50204129	0.02	ENSG00000207922	.	6706	0.12
chr15_56351412_56351563	0.02	ENSG00000239703	.	29308	0.2
chr2_51222998_51223149	0.02	NRXN1	neurexin 1	32338	0.18
chr5_98397075_98397538	0.02	ENSG00000200351	.	124855	0.06
chr1_1240794_1241080	0.02	ACAP3	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	2332	0.11
chr2_62702703_62702972	0.02	ENSG00000241625	.	15476	0.23
chr2_85956322_85956473	0.02	ENSG00000199687	.	937	0.49
chr14_75085047_75085411	0.02	LTBP2	latent transforming growth factor beta binding protein 2	5923	0.21
chr1_3382586_3382737	0.02	ARHGEF16	Rho guanine nucleotide exchange factor (GEF) 16	92	0.97
chr4_183769117_183769268	0.02	ENSG00000221186	.	21811	0.22
chr11_451343_451494	0.02	PTDSS2	phosphatidylserine synthase 2	1138	0.29
chr18_30049396_30050442	0.02	GAREM	GRB2 associated, regulator of MAPK1	476	0.87
chr19_2079674_2079825	0.02	MOB3A	MOB kinase activator 3A	1031	0.38
chr3_20106255_20106406	0.02	KAT2B	K(lysine) acetyltransferase 2B	24815	0.17
chr2_218875419_218875830	0.02	TNS1	tensin 1	7906	0.19
chr7_79081753_79081967	0.02	ENSG00000234456	.	338	0.8
chr6_119255358_119255671	0.02	MCM9	minichromosome maintenance complex component 9	127	0.82
chr15_41062187_41062634	0.02	C15orf62	chromosome 15 open reading frame 62	251	0.86
chr19_49654515_49654666	0.02	HRC	histidine rich calcium binding protein	2102	0.15
chr4_125065453_125065672	0.02	ANKRD50	ankyrin repeat domain 50	568325	0.0
chr20_62289694_62289895	0.02	RTEL1	regulator of telomere elongation helicase 1	81	0.94
chr14_54948388_54948539	0.02	GMFB	glia maturation factor, beta	6913	0.21
chr17_62837136_62837287	0.02	PLEKHM1P	pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene	3968	0.14
chr14_100069286_100069437	0.02	CCDC85C	coiled-coil domain containing 85C	1002	0.53
chr4_146445784_146445935	0.02	SMAD1-AS1	SMAD1 antisense RNA 1	7589	0.21
chr5_175587605_175587756	0.02	FAM153B	family with sequence similarity 153, member B	75771	0.08
chr11_61049274_61049514	0.02	VWCE	von Willebrand factor C and EGF domains	8116	0.13
chr7_47674871_47675022	0.02	C7orf65	chromosome 7 open reading frame 65	19896	0.23
chr3_43256020_43256171	0.02	ENSG00000222331	.	3732	0.28
chr10_28537061_28537300	0.02	MPP7	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	9514	0.27
chr5_110846365_110846666	0.02	STARD4-AS1	STARD4 antisense RNA 1	1409	0.37
chr1_201438452_201438736	0.02	PHLDA3	pleckstrin homology-like domain, family A, member 3	229	0.92
chr16_2557182_2557815	0.02	ATP6V0C	ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c	6373	0.06
chr5_175980994_175981145	0.02	ENSG00000207420	.	2636	0.17
chr13_44887324_44887479	0.02	SERP2	stress-associated endoplasmic reticulum protein family member 2	60577	0.14
chr14_23315995_23316146	0.02	ENSG00000212335	.	5867	0.08
chr22_30601478_30601684	0.02	RP3-438O4.4		1517	0.31
chr10_1094442_1094708	0.02	IDI1	isopentenyl-diphosphate delta isomerase 1	238	0.82
chr19_13992257_13992611	0.02	NANOS3	nanos homolog 3 (Drosophila)	4371	0.1
chr4_26789379_26789589	0.02	STIM2	stromal interaction molecule 2	69816	0.11
chr15_78330943_78331094	0.02	ENSG00000221476	.	145	0.94
chr12_120667761_120668330	0.02	PXN	paxillin	3398	0.15
chrX_9754895_9755291	0.02	SHROOM2	shroom family member 2	597	0.54
chr17_56595689_56596135	0.02	MTMR4	myotubularin related protein 4	646	0.52
chr20_19192275_19192426	0.02	SLC24A3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	940	0.53
chr1_230223344_230223516	0.02	GALNT2	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)	20412	0.23
chr19_3365786_3365951	0.02	NFIC	nuclear factor I/C (CCAAT-binding transcription factor)	679	0.7
chr5_146933859_146934303	0.02	DPYSL3	dihydropyrimidinase-like 3	44462	0.19
chr1_232622150_232622301	0.02	SIPA1L2	signal-induced proliferation-associated 1 like 2	24062	0.27
chr8_100796366_100796517	0.02	RP11-402L5.1		14974	0.26
chr1_40423471_40423622	0.02	MFSD2A	major facilitator superfamily domain containing 2A	2724	0.22
chr6_114084680_114084971	0.02	ENSG00000253091	.	17842	0.21
chr8_11204724_11204991	0.02	AF131216.5		154	0.93
chr11_67478742_67478899	0.02	ENSG00000266451	.	23259	0.12
chr7_76957466_76957741	0.02	GSAP	gamma-secretase activating protein	2040	0.4
chr12_46384039_46384292	0.02	SCAF11	SR-related CTD-associated factor 11	183	0.97
chr15_39871853_39872515	0.02	THBS1	thrombospondin 1	1096	0.52
chr2_19547772_19548046	0.02	ENSG00000266738	.	281	0.94
chr18_77616537_77616791	0.02	KCNG2	potassium voltage-gated channel, subfamily G, member 2	7004	0.27
chr1_54778827_54778978	0.02	RP5-997D24.3		27824	0.16
chr11_63971893_63972044	0.02	FERMT3	fermitin family member 3	2182	0.12
chr11_124615580_124615731	0.02	RP11-677M14.2		578	0.58
chr14_26016303_26016454	0.02	ENSG00000212270	.	259540	0.02
chr3_187926447_187926702	0.02	LPP	LIM domain containing preferred translocation partner in lipoma	588	0.8
chr19_13263975_13264220	0.02	CTC-250I14.6		429	0.65
chr11_44614749_44614953	0.02	CD82	CD82 molecule	3555	0.24
chr1_150849308_150849506	0.02	ARNT	aryl hydrocarbon receptor nuclear translocator	163	0.93
chr21_33945347_33945498	0.02	ENSG00000252950	.	10037	0.14
chr15_69919016_69919167	0.02	ENSG00000238870	.	104070	0.07
chr7_5488255_5488406	0.02	TNRC18	trinucleotide repeat containing 18	23285	0.11
chr6_139870784_139870935	0.02	CITED2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	175102	0.03
chr9_38047346_38047861	0.02	SHB	Src homology 2 domain containing adaptor protein B	21605	0.23
chr17_48712666_48713008	0.02	ABCC3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	619	0.6
chr17_48600636_48600787	0.02	MYCBPAP	MYCBP associated protein	370	0.75
chr7_98853393_98853544	0.02	KPNA7	karyopherin alpha 7 (importin alpha 8)	48339	0.12
chr5_176798986_176799137	0.02	RGS14	regulator of G-protein signaling 14	5117	0.1
chr1_179095553_179095704	0.02	ABL2	c-abl oncogene 2, non-receptor tyrosine kinase	16551	0.19
chr2_96812420_96812577	0.02	DUSP2	dual specificity phosphatase 2	1319	0.38
chr17_76123581_76124282	0.02	TMC6	transmembrane channel-like 6	780	0.49
chr1_16480648_16480799	0.02	RP11-276H7.2		983	0.38
chr8_107668314_107668465	0.02	RP11-649G15.2		1387	0.39
chr15_25102737_25102888	0.02	SNRPN	small nuclear ribonucleoprotein polypeptide N	1114	0.44
chr5_17898081_17898232	0.02	ENSG00000212278	.	338076	0.01
chrX_106958420_106958715	0.02	TSC22D3	TSC22 domain family, member 3	1064	0.59
chr22_32929726_32929936	0.02	LL22NC03-104C7.1		49455	0.12
chr13_109625213_109625364	0.02	MYO16	myosin XVI	86771	0.1
chr16_84210540_84210779	0.02	DNAAF1	dynein, axonemal, assembly factor 1	912	0.43
chr12_6492920_6493170	0.02	LTBR	lymphotoxin beta receptor (TNFR superfamily, member 3)	154	0.92
chr13_39260620_39261051	0.02	FREM2	FRAS1 related extracellular matrix protein 2	431	0.9
chr6_82604485_82604797	0.02	ENSG00000206886	.	130900	0.05
chrX_78621891_78622920	0.02	ITM2A	integral membrane protein 2A	451	0.91
chr17_66179526_66179677	0.02	LRRC37A16P	leucine rich repeat containing 37, member A16, pseudogene	30992	0.15
chr11_130284349_130284500	0.02	ADAMTS8	ADAM metallopeptidase with thrombospondin type 1 motif, 8	14464	0.23
chr20_34652778_34652969	0.02	EPB41L1	erythrocyte membrane protein band 4.1-like 1	26553	0.16
chr1_212838734_212839243	0.02	ENSG00000207491	.	26618	0.12
chr2_232537261_232537412	0.02	ENSG00000239202	.	26352	0.14
chr1_15500593_15500744	0.02	C1orf195	chromosome 1 open reading frame 195	2855	0.29
chr5_2659090_2659241	0.02	IRX2	iroquois homeobox 2	92604	0.09
chr8_23145924_23146455	0.02	R3HCC1	R3H domain and coiled-coil containing 1	254	0.9
chr18_12946769_12946940	0.02	SEH1L	SEH1-like (S. cerevisiae)	278	0.91
chr7_149468529_149468760	0.02	ZNF467	zinc finger protein 467	1664	0.4
chr2_241377476_241377740	0.02	GPC1	glypican 1	2520	0.24