CRE | Gene | Distance | Association probability | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|---|---|
chr18_70563238_70563465 | Mbd2 | 4838 | 0.206343 | 0.62 | 1.5e-07 | Click! |
chr18_70570299_70570652 | Mbd2 | 2141 | 0.311527 | 0.66 | 8.3e-09 | Click! |
chr18_70570673_70571164 | Mbd2 | 2584 | 0.277187 | 0.56 | 3.2e-06 | Click! |
chr18_70572490_70573108 | Mbd2 | 4465 | 0.220505 | 0.57 | 2.2e-06 | Click! |
chr18_70573474_70573883 | Mbd2 | 5344 | 0.211082 | 0.57 | 1.8e-06 | Click! |
Cis Regulatory Element (CRE) | Target Score | Top associated gene | Gene Info | Distance of CRE to TSS | CRE/Gene association probability |
---|---|---|---|---|---|
chr1_74949307_74952042 | 3.25 |
Ihh |
Indian hedgehog |
768 |
0.5 |
chr7_44350602_44354420 | 3.09 |
Shank1 |
SH3 and multiple ankyrin repeat domains 1 |
1749 |
0.15 |
chr8_84703616_84705950 | 2.49 |
Nfix |
nuclear factor I/X |
2933 |
0.13 |
chr11_69995897_69997244 | 2.32 |
Phf23 |
PHD finger protein 23 |
161 |
0.84 |
chr8_23034845_23035677 | 2.28 |
Ank1 |
ankyrin 1, erythroid |
30 |
0.98 |
chr10_42275609_42276721 | 2.03 |
Foxo3 |
forkhead box O3 |
531 |
0.84 |
chr11_75165245_75169157 | 1.89 |
Hic1 |
hypermethylated in cancer 1 |
945 |
0.35 |
chr2_174330185_174331360 | 1.89 |
Gnas |
GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus |
485 |
0.75 |
chr1_181210767_181211914 | 1.77 |
Wdr26 |
WD repeat domain 26 |
86 |
0.96 |
chr8_120369798_120370458 | 1.76 |
Gm22715 |
predicted gene, 22715 |
73421 |
0.09 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.6 | GO:0048821 | erythrocyte development(GO:0048821) |
0.1 | 3.6 | GO:0070936 | protein K48-linked ubiquitination(GO:0070936) |
0.1 | 3.3 | GO:0070979 | protein K11-linked ubiquitination(GO:0070979) |
0.1 | 2.7 | GO:0051865 | protein autoubiquitination(GO:0051865) |
0.3 | 2.5 | GO:0000183 | chromatin silencing at rDNA(GO:0000183) |
0.1 | 2.5 | GO:0006334 | nucleosome assembly(GO:0006334) |
0.0 | 2.5 | GO:0000082 | G1/S transition of mitotic cell cycle(GO:0000082) |
0.1 | 2.4 | GO:0006367 | transcription initiation from RNA polymerase II promoter(GO:0006367) |
0.8 | 2.3 | GO:0002337 | B-1a B cell differentiation(GO:0002337) |
0.7 | 2.1 | GO:1901097 | negative regulation of autophagosome maturation(GO:1901097) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 46.9 | GO:0005654 | nucleoplasm(GO:0005654) |
0.0 | 7.6 | GO:0000785 | chromatin(GO:0000785) |
0.0 | 6.6 | GO:0005730 | nucleolus(GO:0005730) |
0.1 | 4.8 | GO:0016605 | PML body(GO:0016605) |
0.1 | 3.3 | GO:0031519 | PcG protein complex(GO:0031519) |
0.1 | 3.3 | GO:0000123 | histone acetyltransferase complex(GO:0000123) |
0.1 | 3.2 | GO:0005643 | nuclear pore(GO:0005643) |
0.1 | 2.8 | GO:0035145 | exon-exon junction complex(GO:0035145) |
0.1 | 2.8 | GO:0090544 | BAF-type complex(GO:0090544) |
0.1 | 2.8 | GO:0070461 | SAGA-type complex(GO:0070461) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.6 | GO:0016881 | acid-amino acid ligase activity(GO:0016881) |
0.0 | 7.6 | GO:0044822 | poly(A) RNA binding(GO:0044822) |
0.2 | 5.4 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) |
0.1 | 4.0 | GO:0004402 | histone acetyltransferase activity(GO:0004402) |
0.0 | 4.0 | GO:0003705 | transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0003705) |
0.0 | 3.8 | GO:0042393 | histone binding(GO:0042393) |
0.0 | 3.8 | GO:0005525 | GTP binding(GO:0005525) |
0.0 | 2.8 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.1 | 2.7 | GO:0017112 | Rab guanyl-nucleotide exchange factor activity(GO:0017112) |
0.0 | 2.7 | GO:0008276 | protein methyltransferase activity(GO:0008276) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.9 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 4.2 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.1 | 3.9 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.1 | 3.7 | PID P53 REGULATION PATHWAY | p53 pathway |
0.2 | 3.3 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.1 | 3.2 | SIG IL4RECEPTOR IN B LYPHOCYTES | Genes related to IL4 rceptor signaling in B lymphocytes |
0.1 | 3.0 | PID VEGFR1 2 PATHWAY | Signaling events mediated by VEGFR1 and VEGFR2 |
0.1 | 2.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.1 | 2.3 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
0.1 | 2.1 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 10.5 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.2 | 4.8 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.2 | 3.4 | REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION | Genes involved in Pre-NOTCH Transcription and Translation |
0.1 | 3.4 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.0 | 3.3 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.0 | 3.3 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
0.2 | 3.0 | REACTOME SIGNALING BY FGFR1 FUSION MUTANTS | Genes involved in Signaling by FGFR1 fusion mutants |
0.2 | 3.0 | REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY | Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity |
0.1 | 2.8 | REACTOME PIP3 ACTIVATES AKT SIGNALING | Genes involved in PIP3 activates AKT signaling |
0.2 | 2.6 | REACTOME JNK C JUN KINASES PHOSPHORYLATION AND ACTIVATION MEDIATED BY ACTIVATED HUMAN TAK1 | Genes involved in JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1 |