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ENCODE: H3K4me3 ChIP-Seq of different mouse tissues during embryonic development
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Results for Msx1_Lhx9_Barx1_Rax_Dlx6

Z-value: 0.03

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Transcription factors associated with Msx1_Lhx9_Barx1_Rax_Dlx6

Gene Symbol Gene ID Gene Info
ENSMUSG00000048450.10 msh homeobox 1
ENSMUSG00000019230.8 LIM homeobox protein 9
ENSMUSG00000021381.4 BarH-like homeobox 1
ENSMUSG00000024518.3 retina and anterior neural fold homeobox
ENSMUSG00000029754.7 distal-less homeobox 6

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

Activity of the Msx1_Lhx9_Barx1_Rax_Dlx6 motif across conditions

embryonicfacialprominence105embryonicfacialprominence115embryonicfacialprominence125embryonicfacialprominence135embryonicfacialprominence145embryonicfacialprominence155forebrain0forebrain105forebrain115forebrain125forebrain135forebrain145forebrain155forebrain165heart0heart105heart115heart125heart135heart145heart155heart165hindbrain0hindbrain105hindbrain115hindbrain125hindbrain135hindbrain145hindbrain155hindbrain165intestine0intestine145intestine155intestine165kidney0kidney145kidney155kidney165limb105limb115limb125limb135limb145limb155liver0liver115liver125liver135liver145liver155liver165lung0lung145lung155lung165neuraltube115neuraltube125neuraltube135neuraltube145neuraltube155−0.04−0.03−0.02−0.0100.010.020.030.04
sampleactivity

Conditions sorted by the z-value of the Msx1_Lhx9_Barx1_Rax_Dlx6 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

−0.06−0.04−0.0200.020.040.060.08
motif activity z-valuesample

Top target CREs of the motif:

Histogram of CRE-TSS distances for CREs targeted by :

Histogram of

Rank distribution of CRE target scores:

Histogram of target CRE score.

Distribution of target CREs across different genomic regions:

Weighted Piechart of Weighted Piechart of Weighted Piechart of

Network of associatons between targets according to the STRING database.

First level regulatory network of Msx1_Lhx9_Barx1_Rax_Dlx6

PNG image of the network

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Gene Ontology Analysis