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ENCODE: H3K4me1 ChIP-Seq of primary human cells

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Results for BATF3

Z-value: 0.27

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Transcription factors associated with BATF3

Gene Symbol	Gene ID	Gene Info
BATF3 Ensembl NCBI GeneCards UniProt	ENSG00000123685.4	basic leucine zipper ATF-like transcription factor 3

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

CRE	Gene	Distance	Association probability	Pearson corr. coef.	P-value	Plot
chr1_212911456_212911607	BATF3	38204	0.119129	0.82	7.1e-03	Click!
chr1_212884026_212884300	BATF3	10836	0.168773	0.55	1.3e-01	Click!
chr1_212894826_212895572	BATF3	21872	0.151734	-0.50	1.7e-01	Click!
chr1_212874351_212874643	BATF3	1170	0.452951	-0.43	2.5e-01	Click!
chr1_212901261_212901450	BATF3	28028	0.140262	0.38	3.1e-01	Click!

Activity of the BATF3 motif across conditions

Conditions sorted by the z-value of the BATF3 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE)	Target Score	Top associated gene	Gene Info	Distance of CRE to TSS	CRE/Gene association probability
chr5_156696862_156697210	0.23	CYFIP2	cytoplasmic FMR1 interacting protein 2	674	0.62
chr2_144280347_144280652	0.22	AC096558.1		42141	0.16
chr4_170581231_170581398	0.16	CLCN3	chloride channel, voltage-sensitive 3	101	0.98
chr9_6915729_6915880	0.16	KDM4C	lysine (K)-specific demethylase 4C	9697	0.24
chr5_177900691_177901194	0.15	CTB-26E19.1		30847	0.19
chr21_18983750_18984027	0.14	BTG3	BTG family, member 3	1274	0.5
chr17_1305657_1305808	0.14	YWHAE	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon	2060	0.29
chr6_158306516_158306953	0.13	RP3-403L10.3		7084	0.18
chr13_30747324_30747475	0.13	ENSG00000266816	.	33437	0.22
chr4_185069136_185069287	0.13	ENPP6	ectonucleotide pyrophosphatase/phosphodiesterase 6	69903	0.11
chr3_45911190_45911341	0.13	CCR9	chemokine (C-C motif) receptor 9	16731	0.15
chr1_186798987_186799161	0.13	PLA2G4A	phospholipase A2, group IVA (cytosolic, calcium-dependent)	952	0.72
chrX_129318276_129318427	0.12	RAB33A	RAB33A, member RAS oncogene family	12728	0.19
chr3_16843338_16843591	0.12	PLCL2	phospholipase C-like 2	82988	0.1
chr3_46935271_46935422	0.12	AC109583.1	Uncharacterized protein	5175	0.16
chr6_135518184_135518665	0.10	MYB-AS1	MYB antisense RNA 1	1291	0.44
chr10_8284374_8284525	0.10	GATA3	GATA binding protein 3	187680	0.03
chr9_100395113_100395272	0.10	TSTD2	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	665	0.42
chr3_134092582_134092733	0.09	AMOTL2	angiomotin like 2	18	0.98
chr11_59279292_59279443	0.09	OR4D9	olfactory receptor, family 4, subfamily D, member 9	3019	0.16
chr7_100464718_100465052	0.09	TRIP6	thyroid hormone receptor interactor 6	125	0.92
chr14_100112045_100112211	0.09	HHIPL1	HHIP-like 1	648	0.71
chrX_19770106_19770364	0.09	SH3KBP1	SH3-domain kinase binding protein 1	4414	0.34
chr3_32451109_32451284	0.09	CMTM7	CKLF-like MARVEL transmembrane domain containing 7	17665	0.23
chr2_111740835_111740986	0.09	ACOXL	acyl-CoA oxidase-like	3865	0.35
chr5_64331605_64331756	0.08	ENSG00000207439	.	87516	0.1
chr17_62032388_62032539	0.08	SCN4A	sodium channel, voltage-gated, type IV, alpha subunit	17815	0.11
chr1_198904060_198904298	0.08	ENSG00000207759	.	75897	0.11
chr20_25007310_25007600	0.07	ACSS1	acyl-CoA synthetase short-chain family member 1	5853	0.21
chr13_111227788_111227989	0.07	RAB20	RAB20, member RAS oncogene family	13808	0.2
chr10_82181789_82181952	0.07	FAM213A	family with sequence similarity 213, member A	2116	0.32
chr3_62304486_62304637	0.07	ENSG00000241472	.	6	0.57
chr2_219926016_219926467	0.06	IHH	indian hedgehog	1052	0.34
chr8_6114669_6114820	0.06	RP11-115C21.2		149319	0.04
chr13_33646591_33646742	0.06	ENSG00000221677	.	31177	0.19
chr6_156968465_156968883	0.06	ARID1B	AT rich interactive domain 1B (SWI1-like)	130389	0.05
chr11_45831767_45831918	0.06	SLC35C1	solute carrier family 35 (GDP-fucose transporter), member C1	5142	0.18
chr1_94366888_94367039	0.06	GCLM	glutamate-cysteine ligase, modifier subunit	8003	0.19
chr10_133747286_133747437	0.06	PPP2R2D	protein phosphatase 2, regulatory subunit B, delta	594	0.81
chr19_50861782_50862295	0.06	NAPSA	napsin A aspartic peptidase	6844	0.09
chr21_46001951_46002102	0.06	KRTAP10-5	keratin associated protein 10-5	1545	0.17
chr15_98224143_98224294	0.06	LINC00923	long intergenic non-protein coding RNA 923	193562	0.03
chr4_77212822_77212973	0.06	FAM47E-STBD1	FAM47E-STBD1 readthrough	14282	0.17
chr15_81582433_81582671	0.06	IL16	interleukin 16	6702	0.22
chr8_82100250_82100582	0.06	PAG1	phosphoprotein associated with glycosphingolipid microdomains 1	76113	0.1
chr11_60880202_60880378	0.06	CD5	CD5 molecule	10309	0.18
chr14_92346455_92346606	0.05	FBLN5	fibulin 5	2144	0.33
chr20_46369136_46369287	0.05	SULF2	sulfatase 2	45022	0.15
chr2_68612447_68612608	0.05	AC015969.3		19811	0.16
chr6_82569584_82569847	0.05	ENSG00000206886	.	95974	0.08
chr19_15579754_15579917	0.05	RASAL3	RAS protein activator like 3	4453	0.14
chr12_56731704_56731855	0.05	IL23A	interleukin 23, alpha subunit p19	884	0.33
chr19_2775823_2776196	0.05	SGTA	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	5230	0.12
chr5_176569109_176569306	0.05	NSD1	nuclear receptor binding SET domain protein 1	7102	0.21
chr5_75748396_75748547	0.05	IQGAP2	IQ motif containing GTPase activating protein 2	48222	0.17
chr21_34707233_34707384	0.05	IFNAR1	interferon (alpha, beta and omega) receptor 1	10030	0.18
chr21_46898650_46899022	0.05	COL18A1	collagen, type XVIII, alpha 1	11353	0.2
chr5_59437071_59437222	0.04	PDE4D	phosphodiesterase 4D, cAMP-specific	44279	0.19
chr6_16569798_16569949	0.04	ENSG00000265642	.	141119	0.05
chrX_109249032_109249228	0.04	TMEM164	transmembrane protein 164	2787	0.34
chr6_16749772_16749987	0.04	RP1-151F17.1		11490	0.24
chr12_3857937_3858128	0.04	EFCAB4B	EF-hand calcium binding domain 4B	4231	0.27
chr1_32810829_32811029	0.04	TSSK3	testis-specific serine kinase 3	8126	0.12
chr10_48289621_48289908	0.04	ANXA8	annexin A8	34411	0.11
chrX_135724373_135724536	0.04	ENSG00000233093	.	2628	0.24
chr2_51452608_51452759	0.04	NRXN1	neurexin 1	193009	0.03
chr17_79328867_79329074	0.04	TMEM105	transmembrane protein 105	24496	0.11
chr6_73904661_73904812	0.04	KHDC1P1	KH homology domain containing 1 pseudogene 1	15067	0.15
chr17_65505786_65506259	0.04	CTD-2653B5.1		14575	0.17
chr20_56967400_56967551	0.04	VAPB	VAMP (vesicle-associated membrane protein)-associated protein B and C	3106	0.31
chr10_103608236_103608387	0.03	KCNIP2	Kv channel interacting protein 2	4634	0.19
chr9_92110830_92111100	0.03	SEMA4D	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	1382	0.41
chr5_61612133_61612284	0.03	KIF2A	kinesin heavy chain member 2A	4568	0.3
chr22_30662165_30662316	0.03	OSM	oncostatin M	433	0.7
chr3_101555850_101556001	0.03	NFKBIZ	nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	9088	0.19
chr2_217641332_217641483	0.03	ENSG00000222832	.	16916	0.18
chr2_198575264_198575450	0.03	MARS2	methionyl-tRNA synthetase 2, mitochondrial	5270	0.2
chr14_58605715_58605866	0.03	C14orf37	chromosome 14 open reading frame 37	13141	0.19
chr13_52209380_52209601	0.03	ENSG00000242893	.	41139	0.12
chr17_75531537_75531688	0.03	SEPT9	septin 9	53617	0.12
chr11_77785895_77786046	0.03	NDUFC2	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa	4895	0.12
chr6_36076165_36076316	0.03	MAPK13	mitogen-activated protein kinase 13	21858	0.16
chr22_39745336_39745494	0.03	SYNGR1	synaptogyrin 1	515	0.69
chr3_193461847_193462134	0.03	ENSG00000243991	.	3480	0.32
chr16_50742452_50742934	0.03	NOD2	nucleotide-binding oligomerization domain containing 2	3412	0.14
chr11_12695755_12695947	0.03	TEAD1	TEA domain family member 1 (SV40 transcriptional enhancer factor)	118	0.98
chr11_77524472_77524623	0.03	RSF1	remodeling and spacing factor 1	7205	0.15
chr8_30762092_30762243	0.03	TEX15	testis expressed 15	55559	0.14
chr17_76749954_76750222	0.03	CYTH1	cytohesin 1	17116	0.18
chr8_27222091_27222616	0.03	PTK2B	protein tyrosine kinase 2 beta	15815	0.21
chr7_138393128_138393279	0.03	SVOPL	SVOP-like	7106	0.24
chr15_48469683_48470033	0.03	MYEF2	myelin expression factor 2	692	0.6
chr9_124091436_124091643	0.03	GSN	gelsolin	2679	0.21
chrX_56791597_56791859	0.03	ENSG00000204272	.	36036	0.23
chr13_97876107_97876342	0.02	MBNL2	muscleblind-like splicing regulator 2	1615	0.53
chr7_132350846_132351136	0.02	AC009365.3		17438	0.2
chr20_61808362_61808898	0.02	ENSG00000207598	.	1222	0.4
chr8_74792715_74792866	0.02	UBE2W	ubiquitin-conjugating enzyme E2W (putative)	1645	0.41
chr10_73520995_73521418	0.02	C10orf54	chromosome 10 open reading frame 54	3819	0.23
chr5_87963475_87963729	0.02	ENSG00000245526	.	845	0.63
chr1_40860718_40861074	0.02	SMAP2	small ArfGAP2	1611	0.36
chr17_62141355_62141640	0.02	ICAM2	intercellular adhesion molecule 2	43503	0.11
chr13_113664073_113664237	0.02	RP11-120K24.5		170	0.9
chr13_41139475_41139713	0.02	AL133318.1	Uncharacterized protein	28271	0.22
chr10_50452094_50452371	0.02	C10orf71-AS1	C10orf71 antisense RNA 1	54593	0.1
chr7_8297929_8298080	0.02	ICA1	islet cell autoantigen 1, 69kDa	3678	0.21
chr3_38079216_38079504	0.02	DLEC1	deleted in lung and esophageal cancer 1	1336	0.35
chr5_158176936_158177087	0.02	CTD-2363C16.1		233003	0.02
chr21_44184193_44184344	0.02	AP001627.1		22400	0.2
chr6_2111445_2111677	0.02	GMDS	GDP-mannose 4,6-dehydratase	64664	0.15
chr13_107862893_107863044	0.02	ENSG00000221316	.	89587	0.09
chr4_2284128_2284303	0.02	ZFYVE28	zinc finger, FYVE domain containing 28	5227	0.14
chr1_205779229_205779380	0.02	SLC41A1	solute carrier family 41 (magnesium transporter), member 1	3000	0.23
chrX_135848042_135848429	0.02	ARHGEF6	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	1267	0.45
chr17_62972703_62972949	0.02	AMZ2P1	archaelysin family metallopeptidase 2 pseudogene 1	3191	0.2
chr19_14117646_14117797	0.02	RFX1	regulatory factor X, 1 (influences HLA class II expression)	624	0.56
chr7_74837064_74837215	0.02	AC004878.2		18173	0.13
chr17_63048049_63048280	0.02	RP11-583F2.5		137	0.96
chr10_126672174_126672466	0.02	CTBP2	C-terminal binding protein 2	22262	0.16
chr18_3277346_3277526	0.02	MYL12B	myosin, light chain 12B, regulatory	14482	0.16
chr12_133022629_133022780	0.02	MUC8	mucin 8	28022	0.17
chr9_245521_245672	0.02	RP11-59O6.3		27406	0.15
chr1_9790555_9790706	0.02	PIK3CD	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta	12503	0.17
chr8_10697366_10697517	0.02	PINX1	PIN2/TERF1 interacting, telomerase inhibitor 1	55	0.51
chr15_65576232_65576450	0.02	ENSG00000206903	.	1588	0.26
chr14_76010271_76010422	0.02	BATF	basic leucine zipper transcription factor, ATF-like	21443	0.15
chr19_5687992_5688143	0.02	RPL36	ribosomal protein L36	2140	0.17
chr22_24555252_24555403	0.02	CABIN1	calcineurin binding protein 1	3521	0.21
chr2_144075020_144075171	0.02	RP11-190J23.1		145354	0.04
chr7_38309731_38309882	0.02	STARD3NL	STARD3 N-terminal like	91809	0.09
chr2_228312998_228313149	0.01	ENSG00000266382	.	23775	0.17
chr21_27457592_27457743	0.01	APP	amyloid beta (A4) precursor protein	4710	0.29
chr14_22457517_22457668	0.01	ENSG00000238634	.	153295	0.04
chr19_45625479_45625630	0.01	AC005757.6		14681	0.09
chr22_45664092_45664243	0.01	UPK3A	uroplakin 3A	16696	0.16
chr7_76266405_76266556	0.01	POMZP3	POM121 and ZP3 fusion	9922	0.22
chr17_2516877_2517028	0.01	PAFAH1B1	platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)	19912	0.14
chr1_244396134_244396285	0.01	C1orf100	chromosome 1 open reading frame 100	119728	0.05
chr20_62580456_62580607	0.01	UCKL1	uridine-cytidine kinase 1-like 1	1948	0.13
chr7_75081723_75081874	0.01	POM121C	POM121 transmembrane nucleoporin C	9805	0.13
chr1_167193026_167193202	0.01	POU2F1	POU class 2 homeobox 1	2971	0.23
chr11_66059435_66059843	0.01	TMEM151A	transmembrane protein 151A	298	0.71
chr1_22380057_22380208	0.01	CDC42	cell division cycle 42	342	0.82
chr6_32164359_32164510	0.01	NOTCH4	notch 4	921	0.28
chr9_80362813_80362964	0.01	GNAQ	guanine nucleotide binding protein (G protein), q polypeptide	75027	0.11
chr11_12071055_12071206	0.01	DKK3	dickkopf WNT signaling pathway inhibitor 3	39814	0.17
chr16_90021030_90021181	0.01	DEF8	differentially expressed in FDCP 8 homolog (mouse)	525	0.64
chr7_50535965_50536168	0.01	FIGNL1	fidgetin-like 1	17978	0.2
chr3_140693787_140693938	0.01	RP11-231L11.3		2276	0.36
chr22_32805402_32805689	0.01	RTCB	RNA 2',3'-cyclic phosphate and 5'-OH ligase	2679	0.22
chr3_107646211_107646473	0.01	BBX	bobby sox homolog (Drosophila)	128904	0.06
chr17_5365759_5365910	0.01	DHX33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	6234	0.12
chr19_11074648_11074881	0.01	SMARCA4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	2767	0.19
chr17_75425276_75425533	0.01	SEPT9	septin 9	2366	0.24
chr1_47060894_47061171	0.01	MKNK1	MAP kinase interacting serine/threonine kinase 1	301	0.87
chr6_37891842_37892090	0.01	ZFAND3	zinc finger, AN1-type domain 3	5769	0.23
chr5_139930646_139930797	0.01	SRA1	steroid receptor RNA activator 1	8	0.94
chr2_37062565_37062716	0.01	AC007382.1	Uncharacterized protein	5890	0.23
chr14_25103522_25103673	0.01	GZMB	granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1)	124	0.96
chr10_112016537_112016688	0.01	MXI1	MAX interactor 1, dimerization protein	29175	0.18
chr1_151445359_151445526	0.01	POGZ	pogo transposable element with ZNF domain	13501	0.11
chr22_29191548_29191699	0.01	XBP1	X-box binding protein 1	4498	0.15
chr8_134501895_134502046	0.01	ST3GAL1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	27	0.99
chr19_19538149_19538407	0.01	GATAD2A	GATA zinc finger domain containing 2A	47	0.96
chr5_130870514_130870903	0.01	RAPGEF6	Rap guanine nucleotide exchange factor (GEF) 6	1982	0.48
chr16_17091340_17091491	0.01	CTD-2576D5.4		136946	0.05
chr17_66242892_66243078	0.01	AMZ2	archaelysin family metallopeptidase 2	730	0.5
chr22_44207665_44207833	0.01	EFCAB6	EF-hand calcium binding domain 6	321	0.69
chr19_16205574_16205925	0.01	TPM4	tropomyosin 4	1367	0.36
chr5_102729544_102729916	0.01	C5orf30	chromosome 5 open reading frame 30	134605	0.05
chr22_46025392_46025543	0.01	ENSG00000251985	.	4955	0.22
chr3_32445320_32445471	0.01	CMTM7	CKLF-like MARVEL transmembrane domain containing 7	11864	0.25
chrX_39169100_39169251	0.00	ENSG00000207122	.	228637	0.02
chr9_79218995_79219152	0.00	ENSG00000241781	.	32342	0.18
chr10_34411268_34411541	0.00	ENSG00000199200	.	79598	0.12
chr1_32389459_32389792	0.00	PTP4A2	protein tyrosine phosphatase type IVA, member 2	4541	0.2
chr7_43641940_43642091	0.00	STK17A	serine/threonine kinase 17a	19351	0.17
chr11_118755028_118755179	0.00	CXCR5	chemokine (C-X-C motif) receptor 5	628	0.54
chr5_68660810_68660961	0.00	TAF9	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa	1763	0.28
chr16_2178397_2178612	0.00	ENSG00000200059	.	3348	0.07
chr22_40768850_40769001	0.00	SGSM3	small G protein signaling modulator 3	2290	0.25
chr2_152220395_152220546	0.00	ENSG00000264684	.	4378	0.19
chr8_74889988_74890139	0.00	TMEM70	transmembrane protein 70	1619	0.27
chr9_83990440_83990591	0.00	TLE1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	237922	0.02
chr3_158288758_158289050	0.00	MLF1	myeloid leukemia factor 1	48	0.5
chr15_33122968_33123119	0.00	FMN1	formin 1	57412	0.12
chr6_30118578_30118729	0.00	TRIM10	tripartite motif containing 10	10058	0.1
chr2_235383990_235384141	0.00	ARL4C	ADP-ribosylation factor-like 4C	21179	0.29
chr20_42575036_42575187	0.00	TOX2	TOX high mobility group box family member 2	766	0.73
chr2_28114153_28114304	0.00	RBKS	ribokinase	263	0.74
chr2_43036312_43036514	0.00	HAAO	3-hydroxyanthranilate 3,4-dioxygenase	16681	0.23
chr12_27939071_27939324	0.00	RP11-860B13.1		5197	0.13
chr3_115231996_115232281	0.00	GAP43	growth associated protein 43	110033	0.07

Histogram of CRE-TSS distances for CREs targeted by :

Rank distribution of CRE target scores:

Distribution of target CREs across different genomic regions:

Network of associatons between targets according to the STRING database.

First level regulatory network of BATF3

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0048388	endosomal lumen acidification(GO:0048388)
0.0	0.1	GO:2001280	regulation of prostaglandin biosynthetic process(GO:0031392) positive regulation of prostaglandin biosynthetic process(GO:0031394) regulation of unsaturated fatty acid biosynthetic process(GO:2001279) positive regulation of unsaturated fatty acid biosynthetic process(GO:2001280)
0.0	0.1	GO:0008588	release of cytoplasmic sequestered NF-kappaB(GO:0008588)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0045323	interleukin-1 receptor complex(GO:0045323)

Gene overrepresentation in molecular function category:

Total log-likelihood	Term	Description
0.1	GO:0016901	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor(GO:0016901)
0.1	GO:0047498	calcium-dependent phospholipase A2 activity(GO:0047498)
0.1	GO:0005149	interleukin-1 receptor binding(GO:0005149)
0.2	GO:0005247	voltage-gated chloride channel activity(GO:0005247)

Results for BATF3

Z-value: 0.27

Motif logo

Transcription factors associated with BATF3

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

Activity of the BATF3 motif across conditions

Conditions sorted by the z-value of the BATF3 motif activity

Top target CREs of the motif:

Histogram of CRE-TSS distances for CREs targeted by :

Rank distribution of CRE target scores:

Distribution of target CREs across different genomic regions:

Network of associatons between targets according to the STRING database.

First level regulatory network of BATF3

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: