Project

ENCODE: H3K4me1 ChIP-Seq of primary human cells

Navigation

Downloads

CREMA is a free online tool that recognizes most important transcription factors that change the chromatin state across different samples.

Results for HINFP1

Z-value: 0.23

Motif logo

Transcription factors associated with HINFP1

Gene Symbol	Gene ID	Gene Info

Activity of the HINFP1 motif across conditions

Conditions sorted by the z-value of the HINFP1 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE)	Target Score	Top associated gene	Gene Info	Distance of CRE to TSS	CRE/Gene association probability
chr19_19174243_19174394	0.13	SLC25A42	solute carrier family 25, member 42	490	0.72
chr8_41511463_41511684	0.09	NKX6-3	NK6 homeobox 3	2718	0.18
chr19_4304476_4304627	0.08	FSD1	fibronectin type III and SPRY domain containing 1	46	0.94
chr7_15726263_15726517	0.08	MEOX2	mesenchyme homeobox 2	47	0.98
chr14_73704548_73704719	0.08	PAPLN	papilin, proteoglycan-like sulfated glycoprotein	428	0.79
chrX_40034598_40034749	0.08	BCOR	BCL6 corepressor	1900	0.49
chr3_12910192_12910522	0.08	AC034198.7		18199	0.14
chr19_33765417_33765674	0.08	CTD-2540B15.11		25295	0.11
chr4_154144370_154144521	0.07	TRIM2	tripartite motif containing 2	18827	0.19
chr15_68112430_68112716	0.07	SKOR1	SKI family transcriptional corepressor 1	531	0.83
chr6_167370368_167370519	0.06	RNASET2	ribonuclease T2	186	0.87
chr7_101460826_101460977	0.06	CUX1	cut-like homeobox 1	19	0.98
chr6_163834522_163834673	0.06	QKI	QKI, KH domain containing, RNA binding	1078	0.69
chr16_718371_718640	0.05	RHOT2	ras homolog family member T2	296	0.66
chr2_71693709_71693860	0.05	DYSF	dysferlin	48	0.98
chr1_29448600_29448837	0.05	TMEM200B	transmembrane protein 200B	295	0.91
chr10_49731313_49731514	0.05	ARHGAP22	Rho GTPase activating protein 22	868	0.65
chr19_10654183_10654334	0.05	ATG4D	autophagy related 4D, cysteine peptidase	336	0.76
chr2_30454407_30454726	0.05	LBH	limb bud and heart development	163	0.96
chr7_155166439_155166623	0.05	BLACE	B-cell acute lymphoblastic leukemia expressed	5902	0.18
chr2_11052081_11052232	0.05	KCNF1	potassium voltage-gated channel, subfamily F, member 1	93	0.98
chr16_86968692_86968843	0.05	RP11-899L11.3		280754	0.01
chr19_48996822_48997092	0.04	LMTK3	lemur tyrosine kinase 3	18104	0.09
chr16_75033732_75033945	0.04	ZNRF1	zinc and ring finger 1, E3 ubiquitin protein ligase	595	0.76
chr11_76381975_76382126	0.04	LRRC32	leucine rich repeat containing 32	259	0.91
chr13_25745444_25745788	0.04	AMER2	APC membrane recruitment protein 2	241	0.93
chr1_110753630_110753781	0.04	KCNC4	potassium voltage-gated channel, Shaw-related subfamily, member 4	390	0.72
chr1_228194389_228194540	0.04	WNT3A	wingless-type MMTV integration site family, member 3A	288	0.9
chr1_62784603_62784939	0.04	KANK4	KN motif and ankyrin repeat domains 4	201	0.95
chr8_55379558_55379709	0.03	SOX17	SRY (sex determining region Y)-box 17	9138	0.26
chr6_100061828_100062580	0.03	PRDM13	PR domain containing 13	7598	0.19
chr9_130965791_130965942	0.03	DNM1	dynamin 1	141	0.86
chr1_9600228_9600966	0.03	SLC25A33	solute carrier family 25 (pyrimidine nucleotide carrier), member 33	1056	0.57
chr2_173292406_173292557	0.03	ITGA6	integrin, alpha 6	36	0.95
chr10_112403450_112403743	0.03	RBM20	RNA binding motif protein 20	559	0.6
chr10_119135437_119135737	0.03	PDZD8	PDZ domain containing 8	609	0.77
chr15_99646176_99646459	0.03	RP11-654A16.3		287	0.81
chr15_31619464_31619615	0.03	KLF13	Kruppel-like factor 13	481	0.89
chr2_178128811_178128962	0.03	AC079305.10		201	0.65
chr19_41111618_41111808	0.03	ENSG00000266164	.	1242	0.36
chr4_183369356_183369507	0.02	TENM3	teneurin transmembrane protein 3	721	0.79
chr18_11981846_11982049	0.02	IMPA2	inositol(myo)-1(or 4)-monophosphatase 2	278	0.9
chr3_196696276_196696552	0.02	PIGZ	phosphatidylinositol glycan anchor biosynthesis, class Z	672	0.62
chr21_36261605_36261866	0.02	RUNX1	runt-related transcription factor 1	299	0.95
chr2_23886218_23886369	0.02	KLHL29	kelch-like family member 29	21031	0.26
chr1_11724600_11724751	0.02	FBXO6	F-box protein 6	494	0.7
chr1_207226735_207226886	0.02	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	154	0.8
chr1_207082970_207083121	0.02	IL24	interleukin 24	11867	0.14
chr20_1875010_1875174	0.02	SIRPA	signal-regulatory protein alpha	62	0.98
chr6_157801331_157801482	0.02	ZDHHC14	zinc finger, DHHC-type containing 14	759	0.74
chr1_10458488_10458749	0.02	PGD	phosphogluconate dehydrogenase	31	0.96
chr5_92956044_92956482	0.02	ENSG00000251725	.	231	0.94
chr8_146023905_146024105	0.02	ZNF517	zinc finger protein 517	256	0.85
chr1_936066_936217	0.02	HES4	hes family bHLH transcription factor 4	589	0.53
chr17_56234380_56234651	0.01	OR4D1	olfactory receptor, family 4, subfamily D, member 1	2021	0.25
chr1_231297605_231297900	0.01	TRIM67	tripartite motif containing 67	106	0.97
chr7_157486328_157486479	0.01	AC006003.3		46745	0.16
chr2_130939540_130939691	0.01	MZT2B	mitotic spindle organizing protein 2B	114	0.8
chr8_10191959_10192233	0.01	MSRA	methionine sulfoxide reductase A	33051	0.2
chr17_12921001_12921175	0.01	ELAC2	elaC ribonuclease Z 2	88	0.97
chr5_179223700_179223978	0.01	ENSG00000221394	.	1507	0.23
chr5_129239898_129240062	0.01	CHSY3	chondroitin sulfate synthase 3	185	0.93
chr14_36002497_36002787	0.01	INSM2	insulinoma-associated 2	606	0.82
chr16_1030754_1030971	0.01	AC009041.2		390	0.44
chr6_159360341_159360710	0.01	ENSG00000223191	.	12922	0.19
chr16_4165609_4165795	0.01	ADCY9	adenylate cyclase 9	484	0.85
chr19_50432907_50433192	0.01	NUP62	nucleoporin 62kDa	48	0.67
chr3_139654158_139654536	0.01	CLSTN2	calsyntenin 2	320	0.94
chr2_238582144_238582414	0.01	LRRFIP1	leucine rich repeat (in FLII) interacting protein 1	18509	0.2
chr21_32930676_32931085	0.01	TIAM1	T-cell lymphoma invasion and metastasis 1	410	0.65
chrX_71131064_71131256	0.01	NHSL2	NHS-like 2	222	0.95
chr17_17603799_17604090	0.01	RAI1	retinoic acid induced 1	18135	0.17
chr16_30217757_30217917	0.01	RP11-347C12.3	Uncharacterized protein	354	0.72
chr13_28528810_28529001	0.01	ATP5EP2	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2	9562	0.14
chrY_21154851_21155002	0.01	ENSG00000252766	.	26047	0.25
chr8_145550773_145550924	0.01	DGAT1	diacylglycerol O-acyltransferase 1	275	0.78
chr6_18277677_18277884	0.01	ENSG00000199715	.	4283	0.21
chr2_129079674_129079825	0.01	HS6ST1	heparan sulfate 6-O-sulfotransferase 1	3598	0.29
chr19_33773041_33773249	0.01	CTD-2540B15.11		17695	0.12
chr17_15847824_15848196	0.01	ADORA2B	adenosine A2b receptor	221	0.94
chr4_87812904_87813288	0.01	C4orf36	chromosome 4 open reading frame 36	452	0.86
chrX_70150765_70150916	0.01	SLC7A3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	106	0.97
chr1_155051511_155051662	0.01	EFNA3	ephrin-A3	201	0.85
chr1_93426537_93426688	0.01	FAM69A	family with sequence similarity 69, member A	445	0.74
chr7_132260829_132261020	0.01	PLXNA4	plexin A4	305	0.94
chr6_3850608_3850759	0.01	FAM50B	family with sequence similarity 50, member B	1061	0.56
chr9_131419199_131419842	0.01	WDR34	WD repeat domain 34	454	0.72
chr10_50606234_50606396	0.01	DRGX	dorsal root ganglia homeobox	2818	0.27
chr17_54910262_54910635	0.01	C17orf67	chromosome 17 open reading frame 67	808	0.44
chr11_6676804_6676955	0.01	DCHS1	dachsous cadherin-related 1	206	0.87
chr12_125053352_125053581	0.01	NCOR2	nuclear receptor corepressor 2	1456	0.58
chr7_22539874_22540117	0.01	STEAP1B	STEAP family member 1B	122	0.97
chr15_65670506_65670816	0.01	IGDCC3	immunoglobulin superfamily, DCC subclass, member 3	283	0.9
chr11_120894551_120894800	0.00	TBCEL	tubulin folding cofactor E-like	106	0.98
chr11_63771531_63771682	0.00	OTUB1	OTU domain, ubiquitin aldehyde binding 1	17292	0.1
chr17_16487655_16488110	0.00	ZNF287	zinc finger protein 287	15362	0.16
chr5_159546835_159547068	0.00	PWWP2A	PWWP domain containing 2A	521	0.78
chr22_50969265_50969416	0.00	TYMP	thymidine phosphorylase	855	0.28
chr1_117113459_117113610	0.00	CD58	CD58 molecule	114	0.96
chr6_45631315_45631560	0.00	ENSG00000252738	.	17596	0.29
chrX_49033431_49033582	0.00	PLP2	proteolipid protein 2 (colonic epithelium-enriched)	5233	0.09
chr9_139501841_139501992	0.00	ENSG00000252440	.	4949	0.12
chr19_8477814_8477965	0.00	MARCH2	membrane-associated ring finger (C3HC4) 2, E3 ubiquitin protein ligase	265	0.84
chr2_202316811_202317113	0.00	STRADB	STE20-related kinase adaptor beta	443	0.6
chr7_44835539_44835875	0.00	PPIA	peptidylprolyl isomerase A (cyclophilin A)	572	0.69
chr19_12780803_12780979	0.00	WDR83	WD repeat domain 83	171	0.72
chr1_210111505_210111656	0.00	SYT14	synaptotagmin XIV	4	0.99
chr1_1285139_1285398	0.00	DVL1	dishevelled segment polarity protein 1	538	0.51
chr7_89783512_89783724	0.00	STEAP1	six transmembrane epithelial antigen of the prostate 1	71	0.97

Histogram of CRE-TSS distances for CREs targeted by :

Rank distribution of CRE target scores:

Distribution of target CREs across different genomic regions:

Network of associatons between targets according to the STRING database.

First level regulatory network of HINFP1

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Total log-likelihood	Term	Description
0.1	GO:0001757	somite specification(GO:0001757)
0.1	GO:0000301	retrograde transport, vesicle recycling within Golgi(GO:0000301)
0.0	GO:0048669	negative regulation of heart induction by canonical Wnt signaling pathway(GO:0003136) negative regulation of cardioblast cell fate specification(GO:0009997) cardioblast cell fate commitment(GO:0042684) cardioblast cell fate specification(GO:0042685) regulation of cardioblast cell fate specification(GO:0042686) collateral sprouting in absence of injury(GO:0048669) negative regulation of cardioblast differentiation(GO:0051892) cardiac cell fate specification(GO:0060912) negative regulation of heart induction(GO:1901320) negative regulation of cardiocyte differentiation(GO:1905208) regulation of cardiac cell fate specification(GO:2000043) negative regulation of cardiac cell fate specification(GO:2000044)