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ENCODE: H3K4me1 ChIP-Seq of primary human cells

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CREMA is a free online tool that recognizes most important transcription factors that change the chromatin state across different samples.

Results for MYOD1

Z-value: 0.34

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Transcription factors associated with MYOD1

Gene Symbol	Gene ID	Gene Info
MYOD1 Ensembl NCBI GeneCards UniProt	ENSG00000129152.3	MYOD1

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

CRE	Gene	Distance	Association probability	Pearson corr. coef.	P-value	Plot
MYOD1	chr11_17742683_17742834	1643	0.375160	0.68	4.2e-02	Click!
MYOD1	chr11_17741919_17742070	879	0.600829	0.38	3.2e-01	Click!
MYOD1	chr11_17742082_17742233	1042	0.533606	-0.19	6.2e-01	Click!
MYOD1	chr11_17742914_17743065	1874	0.339728	-0.13	7.3e-01	Click!
MYOD1	chr11_17741707_17741858	667	0.705995	-0.02	9.6e-01	Click!

Activity of the MYOD1 motif across conditions

Conditions sorted by the z-value of the MYOD1 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE)	Target Score	Top associated gene	Gene Info	Distance of CRE to TSS	CRE/Gene association probability
chr6_112302873_112303024	0.06	WISP3	WNT1 inducible signaling pathway protein 3	72327	0.1
chr8_36999886_37000356	0.06	KCNU1	potassium channel, subfamily U, member 1	213698	0.02
chr16_84210365_84210716	0.06	DNAAF1	dynein, axonemal, assembly factor 1	793	0.49
chr19_18794913_18795747	0.06	CRTC1	CREB regulated transcription coactivator 1	842	0.53
chr1_7531258_7531628	0.06	RP4-549F15.1		29829	0.21
chr8_78032492_78032643	0.06	PEX2	peroxisomal biogenesis factor 2	119287	0.06
chr17_19912897_19913158	0.05	SPECC1	sperm antigen with calponin homology and coiled-coil domains 1	149	0.82
chr1_201430876_201431027	0.05	PHLDA3	pleckstrin homology-like domain, family A, member 3	7361	0.16
chr15_75954147_75954338	0.05	SNX33	sorting nexin 33	12145	0.09
chr16_70795018_70795169	0.05	VAC14-AS1	VAC14 antisense RNA 1	6057	0.16
chr4_111008729_111008880	0.05	ENSG00000263940	.	30088	0.21
chr7_127804538_127804689	0.05	ENSG00000207705	.	43311	0.14
chr1_202558845_202559092	0.05	RP11-569A11.1		14428	0.2
chr3_139255001_139255152	0.05	RBP1	retinol binding protein 1, cellular	3485	0.18
chr4_1003833_1004600	0.04	FGFRL1	fibroblast growth factor receptor-like 1	449	0.75
chr1_22196645_22196796	0.04	HSPG2	heparan sulfate proteoglycan 2	4479	0.22
chr12_113797562_113797776	0.04	SLC8B1	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	371	0.78
chr12_52585492_52585885	0.04	KRT80	keratin 80	96	0.95
chr21_46737404_46737555	0.04	ENSG00000215447	.	29512	0.14
chr5_121499966_121500239	0.04	CTC-441N14.1		8392	0.19
chr7_44224030_44224181	0.04	GCK	glucokinase (hexokinase 4)	4481	0.15
chr20_47299343_47299823	0.04	ENSG00000251876	.	56402	0.16
chr13_114563717_114564199	0.04	GAS6	growth arrest-specific 6	3082	0.32
chr1_214666364_214666654	0.04	PTPN14	protein tyrosine phosphatase, non-receptor type 14	28363	0.24
chrX_70842306_70842457	0.04	ENSG00000264855	.	3324	0.23
chr1_224752371_224752739	0.04	RP11-100E13.1		51367	0.13
chr14_68698275_68698426	0.04	ENSG00000243546	.	4906	0.3
chr8_49229512_49229861	0.04	ENSG00000252710	.	9096	0.32
chr5_148942473_148942978	0.04	ARHGEF37	Rho guanine nucleotide exchange factor (GEF) 37	11215	0.15
chr15_35985538_35985689	0.04	DPH6	diphthamine biosynthesis 6	147220	0.05
chr9_35695879_35696173	0.04	TPM2	tropomyosin 2 (beta)	5009	0.08
chr5_167831136_167831287	0.04	WWC1	WW and C2 domain containing 1	2073	0.41
chr5_166722386_166722537	0.04	CTB-180C19.1		1183	0.45
chr18_8800055_8800206	0.04	RP11-674N23.4		1524	0.42
chr1_183260943_183261094	0.04	NMNAT2	nicotinamide nucleotide adenylyltransferase 2	12991	0.26
chr17_76787623_76787888	0.04	USP36	ubiquitin specific peptidase 36	7311	0.18
chr16_67441027_67441178	0.04	ZDHHC1	zinc finger, DHHC-type containing 1	6208	0.11
chr19_9957964_9958210	0.04	ENSG00000266247	.	4017	0.11
chr1_115865777_115865928	0.04	NGF	nerve growth factor (beta polypeptide)	15005	0.24
chr6_154720634_154720785	0.04	CNKSR3	CNKSR family member 3	30920	0.21
chr17_78933014_78933165	0.04	CTD-2561B21.3		2424	0.18
chr11_20017061_20017212	0.04	NAV2-AS3	NAV2 antisense RNA 3	14253	0.21
chr1_77415551_77415702	0.04	ENSG00000221720	.	57803	0.14
chr12_122235900_122236051	0.04	RHOF	ras homolog family member F (in filopodia)	2608	0.23
chr22_46942701_46942994	0.04	RP3-439F8.1		5455	0.21
chr1_177895954_177896105	0.04	SEC16B	SEC16 homolog B (S. cerevisiae)	32009	0.25
chr6_4734376_4734527	0.04	CDYL	chromodomain protein, Y-like	28058	0.2
chr6_11609999_11610289	0.04	TMEM170B	transmembrane protein 170B	71633	0.11
chr15_40631527_40631678	0.04	C15orf52	chromosome 15 open reading frame 52	641	0.48
chr5_33613140_33613291	0.04	TARS	threonyl-tRNA synthetase	171728	0.03
chr11_130761204_130761355	0.04	SNX19	sorting nexin 19	2490	0.42
chr11_12028563_12028714	0.04	DKK3	dickkopf WNT signaling pathway inhibitor 3	1492	0.54
chr22_46404101_46404436	0.04	WNT7B	wingless-type MMTV integration site family, member 7B	31259	0.1
chr10_123900032_123900183	0.04	TACC2	transforming, acidic coiled-coil containing protein 2	13878	0.27
chr9_117050436_117050587	0.04	ORM1	orosomucoid 1	34825	0.15
chr3_157503107_157503258	0.04	ENSG00000251751	.	145332	0.05
chr4_99443439_99443625	0.04	RP11-724M22.1		26017	0.24
chr1_115844836_115844987	0.04	RP4-663N10.1		19256	0.23
chr3_149955178_149955329	0.04	RP11-167H9.4		139434	0.04
chr2_101482521_101482672	0.04	AC092168.2		43473	0.15
chr14_93503097_93503248	0.04	ITPK1	inositol-tetrakisphosphate 1-kinase	29531	0.17
chr17_73811280_73811431	0.04	UNK	unkempt family zinc finger	4465	0.1
chr7_30844366_30844720	0.04	AC004691.5		1517	0.41
chr12_96866193_96866344	0.04	C12orf55	chromosome 12 open reading frame 55	17085	0.19
chr17_25711228_25711379	0.04	TBC1D3P5	TBC1 domain family, member 3 pseudogene 5	35261	0.17
chr11_44622766_44622917	0.04	RP11-58K22.5		4046	0.22
chr11_20057064_20057215	0.04	NAV2	neuron navigator 2	12503	0.2
chr19_33737197_33737348	0.04	SLC7A10	solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10	20516	0.12
chr4_26023741_26023892	0.03	SMIM20	small integral membrane protein 20	107885	0.07
chr1_8149763_8149914	0.03	ERRFI1	ERBB receptor feedback inhibitor 1	63470	0.11
chr21_44144933_44145084	0.03	AP001627.1		16860	0.21
chr9_95509831_95509982	0.03	BICD2	bicaudal D homolog 2 (Drosophila)	17188	0.19
chr19_1168901_1169806	0.03	SBNO2	strawberry notch homolog 2 (Drosophila)	411	0.76
chr10_92404426_92404577	0.03	HTR7	5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled	212954	0.02
chr14_73074403_73074554	0.03	RGS6	regulator of G-protein signaling 6	148101	0.04
chr11_131851218_131851369	0.03	RP11-697E14.2		3262	0.35
chr2_129063259_129063630	0.03	HS6ST1	heparan sulfate 6-O-sulfotransferase 1	12707	0.24
chr7_129214409_129214560	0.03	NRF1	nuclear respiratory factor 1	37071	0.16
chr7_46851027_46851178	0.03	AC011294.3	Uncharacterized protein	114382	0.07
chr3_137762283_137762711	0.03	DZIP1L	DAZ interacting zinc finger protein 1-like	23985	0.17
chr15_101227024_101227175	0.03	ENSG00000212306	.	48531	0.13
chr16_70721238_70721389	0.03	MTSS1L	metastasis suppressor 1-like	1344	0.35
chr10_22887513_22887753	0.03	PIP4K2A	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	6991	0.31
chr15_89425540_89425746	0.03	ACAN	aggrecan	9443	0.19
chr1_7462341_7462492	0.03	RP3-453P22.2		12602	0.21
chr1_68638974_68639247	0.03	ENSG00000221203	.	10183	0.22
chrX_153713483_153713883	0.03	UBL4A	ubiquitin-like 4A	1271	0.2
chr2_178065_178216	0.03	AC079779.7		19429	0.21
chr20_60943487_60943729	0.03	LAMA5	laminin, alpha 5	1240	0.33
chr11_72500407_72500904	0.03	STARD10	StAR-related lipid transfer (START) domain containing 10	3643	0.14
chr7_73120336_73120487	0.03	ENSG00000265724	.	5236	0.11
chr3_151644390_151644541	0.03	RP11-454C18.2		1491	0.5
chr17_17734899_17735050	0.03	SREBF1	sterol regulatory element binding transcription factor 1	5157	0.15
chr2_239836120_239836271	0.03	ENSG00000211566	.	58511	0.11
chr22_44317614_44317765	0.03	PNPLA3	patatin-like phospholipase domain containing 3	1930	0.28
chr14_96519676_96519827	0.03	C14orf132	chromosome 14 open reading frame 132	14090	0.23
chr19_4377503_4377654	0.03	SH3GL1	SH3-domain GRB2-like 1	2711	0.11
chr20_43322075_43322226	0.03	RP11-445H22.4		2575	0.19
chr10_115426849_115427000	0.03	NRAP	nebulin-related anchoring protein	3038	0.26
chr11_113544621_113544772	0.03	TMPRSS5	transmembrane protease, serine 5	32328	0.18
chr11_82744912_82745063	0.03	RAB30	RAB30, member RAS oncogene family	256	0.91
chr19_15363852_15364003	0.03	EPHX3	epoxide hydrolase 3	19681	0.15
chr1_181064835_181064986	0.03	IER5	immediate early response 5	7272	0.24
chr3_149322526_149322677	0.03	WWTR1	WW domain containing transcription regulator 1	28562	0.16
chrX_45665420_45666160	0.03	ENSG00000207725	.	59260	0.13
chr20_43968652_43968803	0.03	SDC4	syndecan 4	8337	0.12
chr1_22463906_22464057	0.03	WNT4	wingless-type MMTV integration site family, member 4	5478	0.23
chr4_152882169_152882320	0.03	ENSG00000253077	.	10521	0.3
chr20_1398658_1398906	0.03	FKBP1A	FK506 binding protein 1A, 12kDa	24976	0.13
chr1_148930426_148930577	0.03	ENSG00000222854	.	17119	0.25
chr10_11799148_11799299	0.03	ECHDC3	enoyl CoA hydratase domain containing 3	9949	0.25
chr10_116615267_116615418	0.03	FAM160B1	family with sequence similarity 160, member B1	5208	0.3
chr1_46654010_46654161	0.03	POMGNT1	protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)	9062	0.12
chr11_19702330_19702481	0.03	NAV2	neuron navigator 2	32476	0.19
chr9_110803338_110803489	0.03	ENSG00000222459	.	122154	0.06
chr4_141860055_141860206	0.03	RNF150	ring finger protein 150	58060	0.15
chr8_13016830_13016981	0.03	ENSG00000200630	.	782	0.71
chr16_28394741_28394892	0.03	NPIPB6	nuclear pore complex interacting protein family, member B6	19987	0.15
chr7_156838975_156839126	0.03	MNX1-AS1	MNX1 antisense RNA 1 (head to head)	35551	0.13
chr17_78252953_78253155	0.03	RNF213	ring finger protein 213	18385	0.14
chr12_66197112_66197263	0.03	HMGA2	high mobility group AT-hook 2	20724	0.21
chr17_36621931_36622082	0.03	ARHGAP23	Rho GTPase activating protein 23	6174	0.18
chr15_74716383_74716612	0.03	SEMA7A	semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)	9504	0.14
chr6_24832416_24832567	0.03	ENSG00000263391	.	7802	0.17
chr4_169787971_169788122	0.03	ENSG00000201176	.	18460	0.19
chr5_154072169_154072320	0.03	ENSG00000221552	.	6908	0.16
chr16_28743058_28743209	0.03	EIF3C	eukaryotic translation initiation factor 3, subunit C	18553	0.11
chr8_128962754_128962905	0.03	TMEM75	transmembrane protein 75	2238	0.3
chr10_128038987_128039138	0.03	ADAM12	ADAM metallopeptidase domain 12	37962	0.21
chr3_50138493_50138644	0.03	RBM5	RNA binding motif protein 5	10765	0.14
chr11_86194975_86195126	0.03	RP11-317J19.1		52418	0.14
chr17_74525285_74525534	0.03	CYGB	cytoglobin	2738	0.12
chr13_111029669_111029820	0.03	ENSG00000238629	.	36808	0.16
chr5_133787860_133788011	0.03	CDKN2AIPNL	CDKN2A interacting protein N-terminal like	40346	0.11
chr5_131594695_131594846	0.03	PDLIM4	PDZ and LIM domain 4	1370	0.38
chr1_209792070_209792327	0.03	LAMB3	laminin, beta 3	55	0.97
chr3_66413563_66413714	0.03	ENSG00000241587	.	39359	0.19
chr10_3797419_3797677	0.03	RP11-184A2.3		4289	0.25
chr15_64813692_64814396	0.03	ZNF609	zinc finger protein 609	22553	0.15
chr9_136556701_136556852	0.03	SARDH	sarcosine dehydrogenase	12047	0.18
chr9_131682870_131683022	0.03	PHYHD1	phytanoyl-CoA dioxygenase domain containing 1	228	0.88
chr5_83220337_83220488	0.03	ENSG00000216125	.	49293	0.18
chr7_41926654_41927141	0.03	AC005027.3		181964	0.03
chr11_78949120_78949271	0.03	TENM4	teneurin transmembrane protein 4	22241	0.27
chr1_210053632_210053783	0.03	DIEXF	digestive organ expansion factor homolog (zebrafish)	41557	0.14
chr6_37423751_37423902	0.03	CMTR1	cap methyltransferase 1	19269	0.19
chr5_98397400_98397551	0.03	ENSG00000200351	.	125024	0.06
chr3_48777654_48777856	0.03	PRKAR2A	protein kinase, cAMP-dependent, regulatory, type II, alpha	11996	0.13
chr17_29899687_29899838	0.03	AC003101.1	Uncharacterized protein	1601	0.22
chr5_157567459_157567610	0.03	ENSG00000222626	.	163570	0.04
chr8_99158779_99158930	0.03	POP1	processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae)	28786	0.14
chr17_39643176_39643459	0.03	KRT36	keratin 36	2799	0.11
chr16_11172637_11172993	0.03	RP11-66H6.3		7856	0.21
chr13_99189047_99189198	0.03	STK24	serine/threonine kinase 24	14870	0.21
chr3_29739467_29739618	0.03	RBMS3-AS2	RBMS3 antisense RNA 2	55242	0.17
chr11_12039741_12039892	0.03	DKK3	dickkopf WNT signaling pathway inhibitor 3	8500	0.28
chr10_3088518_3088669	0.03	PFKP	phosphofructokinase, platelet	19932	0.26
chr6_44664207_44664358	0.03	SUPT3H	suppressor of Ty 3 homolog (S. cerevisiae)	258965	0.02
chr10_126105708_126105859	0.03	OAT	ornithine aminotransferase	1722	0.37
chr6_7641658_7641809	0.03	SNRNP48	small nuclear ribonucleoprotein 48kDa (U11/U12)	51301	0.14
chr12_52890097_52890248	0.03	KRT6A	keratin 6A	3131	0.14
chr7_157102085_157102478	0.03	ENSG00000266453	.	3794	0.28
chr3_112365560_112365711	0.03	CCDC80	coiled-coil domain containing 80	5488	0.27
chr22_31479008_31479415	0.03	RP3-412A9.16		340	0.68
chr1_21868245_21868396	0.03	ALPL	alkaline phosphatase, liver/bone/kidney	9452	0.2
chr2_235195728_235195879	0.03	ARL4C	ADP-ribosylation factor-like 4C	209441	0.02
chr2_128334300_128334515	0.03	MYO7B	myosin VIIB	17141	0.16
chr13_22257583_22257734	0.03	FGF9	fibroblast growth factor 9	12136	0.25
chr6_44029671_44029954	0.03	RP5-1120P11.1		12577	0.17
chr8_23780024_23780175	0.03	STC1	stanniocalcin 1	67779	0.11
chr3_122817242_122817393	0.03	PDIA5	protein disulfide isomerase family A, member 5	31122	0.2
chr1_7539238_7539389	0.03	RP4-549F15.1		37699	0.19
chr20_48766064_48766215	0.03	TMEM189-UBE2V1	TMEM189-UBE2V1 readthrough	4035	0.2
chrX_122933914_122934065	0.03	ENSG00000252178	.	28000	0.15
chr17_79037545_79037696	0.03	BAIAP2	BAI1-associated protein 2	6086	0.14
chr19_19928396_19928679	0.03	ZNF506	zinc finger protein 506	3964	0.17
chr3_134086085_134086236	0.03	AMOTL2	angiomotin like 2	4594	0.25
chr2_28055526_28056020	0.03	RBKS	ribokinase	10255	0.18
chr12_57999143_57999314	0.03	DTX3	deltex homolog 3 (Drosophila)	438	0.64
chr17_70382891_70383042	0.03	SOX9	SRY (sex determining region Y)-box 9	265805	0.02
chr20_35473773_35473929	0.03	SOGA1	suppressor of glucose, autophagy associated 1	14425	0.16
chr2_216973110_216973261	0.03	XRCC5	X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)	835	0.62
chr18_53525572_53525723	0.03	TCF4	transcription factor 4	193629	0.03
chr9_37938333_37938484	0.03	ENSG00000251745	.	1643	0.43
chr18_8812965_8813116	0.03	RP11-674N23.4		11386	0.21
chrX_106958207_106958942	0.03	TSC22D3	TSC22 domain family, member 3	1057	0.6
chr1_115843065_115843263	0.03	RP4-663N10.1		17509	0.23
chr8_37379902_37380053	0.03	RP11-150O12.6		5438	0.29
chr11_704821_704972	0.03	EPS8L2	EPS8-like 2	321	0.76
chr15_33300880_33301031	0.03	ENSG00000212415	.	38027	0.18
chr16_65046532_65046683	0.03	CDH11	cadherin 11, type 2, OB-cadherin (osteoblast)	46974	0.21
chr2_99533263_99533414	0.03	KIAA1211L	KIAA1211-like	8354	0.26
chr1_1502439_1502726	0.03	SSU72	SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)	7382	0.1
chr2_220360347_220360718	0.03	RP11-316O14.1		2436	0.13
chr3_159572255_159572681	0.03	SCHIP1	schwannomin interacting protein 1	1740	0.37
chr16_67960353_67960504	0.03	CTRL	chymotrypsin-like	5337	0.09
chr1_38604043_38604194	0.03	ENSG00000265596	.	49215	0.14
chr1_26629293_26629444	0.03	UBXN11	UBX domain protein 11	139	0.93
chr20_10617346_10617497	0.03	JAG1	jagged 1	25733	0.22
chr18_33887538_33887689	0.03	FHOD3	formin homology 2 domain containing 3	9814	0.28

Histogram of CRE-TSS distances for CREs targeted by :

Rank distribution of CRE target scores:

Distribution of target CREs across different genomic regions:

Network of associatons between targets according to the STRING database.

First level regulatory network of MYOD1

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0010566	regulation of ketone biosynthetic process(GO:0010566) regulation of aldosterone metabolic process(GO:0032344) regulation of aldosterone biosynthetic process(GO:0032347)