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ENCODE: H3K4me1 ChIP-Seq of primary human cells

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Results for RBPJ

Z-value: 0.44

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Transcription factors associated with RBPJ

Gene Symbol	Gene ID	Gene Info
RBPJ Ensembl NCBI GeneCards UniProt	ENSG00000168214.16	recombination signal binding protein for immunoglobulin kappa J region

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

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CRE	Gene	Distance	Association probability	Pearson corr. coef.	P-value	Plot
chr4_26198232_26198383	RBPJ	33230	0.242958	-0.80	1.0e-02	Click!
chr4_26300891_26301042	RBPJ	20318	0.282335	-0.75	2.0e-02	Click!
chr4_26387680_26387953	RBPJ	23664	0.257737	-0.77	1.5e-02	Click!
chr4_26454784_26454935	RBPJ	24517	0.215697	0.91	7.4e-04	Click!
chr4_26459444_26459886	RBPJ	29323	0.197982	0.80	1.0e-02	Click!

Showing 1 to 5 of 5 entries

Activity of the RBPJ motif across conditions

Conditions sorted by the z-value of the RBPJ motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

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Cis Regulatory Element (CRE)	Target Score	Top associated gene	Gene Info	Distance of CRE to TSS	CRE/Gene association probability
chr7_140542463_140542763	0.09	ENSG00000271932	.	41259	0.15
chr3_112115394_112115545	0.08	CD200	CD200 molecule	63444	0.12
chr3_71585804_71586230	0.08	ENSG00000221264	.	5223	0.23
chr2_66706378_66706529	0.08	MEIS1	Meis homeobox 1	29606	0.16
chr4_55684754_55684905	0.08	KIT	v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog	160744	0.04
chr2_46067140_46067427	0.08	PRKCE	protein kinase C, epsilon	160758	0.04
chr5_149524173_149524324	0.07	PDGFRB	platelet-derived growth factor receptor, beta polypeptide	7248	0.15
chr3_184503248_184503626	0.07	VPS8	vacuolar protein sorting 8 homolog (S. cerevisiae)	26494	0.22
chr9_127520364_127520515	0.07	RP11-175D17.3		11963	0.14
chr2_20795415_20795848	0.07	HS1BP3-IT1	HS1BP3 intronic transcript 1 (non-protein coding)	3323	0.28

Showing 1 to 10 of 200 entries

Histogram of CRE-TSS distances for CREs targeted by :

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Rank distribution of CRE target scores:

Histogram of target CRE score.

Distribution of target CREs across different genomic regions:

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Network of associatons between targets according to the STRING database.

First level regulatory network of RBPJ

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0030210	heparin biosynthetic process(GO:0030210)
0.0	0.0	GO:0019276	UDP-N-acetylgalactosamine metabolic process(GO:0019276)
0.0	0.0	GO:0070427	nucleotide-binding oligomerization domain containing 1 signaling pathway(GO:0070427)
0.0	0.0	GO:0045198	establishment of epithelial cell apical/basal polarity(GO:0045198)

Showing 1 to 4 of 4 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0004370	glycerol kinase activity(GO:0004370)

Showing 1 to 1 of 1 entries