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ENCODE: H3K4me1 ChIP-Seq of primary human cells

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CREMA is a free online tool that recognizes most important transcription factors that change the chromatin state across different samples.

Results for ZBED1

Z-value: 0.29

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Transcription factors associated with ZBED1

Gene Symbol	Gene ID	Gene Info
ZBED1 Ensembl NCBI GeneCards UniProt	ENSG00000214717.5	ZBED1
ZBED1 Ensembl NCBI GeneCards UniProt	ENSGR0000214717.5	ZBED1

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

CRE	Gene	Distance	Association probability	Pearson corr. coef.	P-value	Plot
ZBED1	chrX_2348108_2348259	70413	0.105548	0.83	5.3e-03	Click!
ZBED1	chrX_2348361_2348532	70150	0.105982	0.47	2.0e-01	Click!
ZBED1	chrX_2416147_2416538	2254	0.301917	0.43	2.4e-01	Click!
ZBED1	chrX_2345256_2345407	73265	0.100937	0.26	5.1e-01	Click!
ZBED1	chrX_2416914_2417114	1582	0.351667	0.15	7.0e-01	Click!

Activity of the ZBED1 motif across conditions

Conditions sorted by the z-value of the ZBED1 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE)	Target Score	Top associated gene	Gene Info	Distance of CRE to TSS	CRE/Gene association probability
chr15_25200368_25200588	0.17	SNURF	SNRPN upstream reading frame protein	317	0.44
chr22_47017621_47018011	0.15	GRAMD4	GRAM domain containing 4	1517	0.48
chr17_30822661_30822885	0.14	RP11-466A19.1		219	0.89
chr4_170541949_170542100	0.13	CLCN3	chloride channel, voltage-sensitive 3	36	0.98
chr5_140044827_140044997	0.13	WDR55	WD repeat domain 55	651	0.44
chr14_63999442_63999593	0.12	PPP2R5E	protein phosphatase 2, regulatory subunit B', epsilon isoform	10499	0.15
chr8_125736424_125736575	0.12	MTSS1	metastasis suppressor 1	3358	0.33
chr15_90607365_90607516	0.09	ZNF710	zinc finger protein 710	3806	0.17
chr10_31321539_31321725	0.09	ZNF438	zinc finger protein 438	766	0.74
chr14_23235289_23235688	0.09	OXA1L	oxidase (cytochrome c) assembly 1-like	243	0.48
chr2_219906286_219906437	0.07	CCDC108	coiled-coil domain containing 108	116	0.93
chr19_56132593_56132790	0.06	ZNF784	zinc finger protein 784	3241	0.09
chr3_47516315_47516770	0.06	SCAP	SREBF chaperone	545	0.7
chr10_104734953_104735104	0.06	CNNM2	cyclin M2	56914	0.11
chr1_232665428_232665579	0.06	SIPA1L2	signal-induced proliferation-associated 1 like 2	14191	0.3
chr5_169308444_169308734	0.06	FAM196B	family with sequence similarity 196, member B	99155	0.07
chr2_86849098_86849398	0.05	RNF103-CHMP3	RNF103-CHMP3 readthrough	903	0.46
chr1_205181854_205182019	0.05	DSTYK	dual serine/threonine and tyrosine protein kinase	1209	0.44
chr17_33387513_33387664	0.05	RFFL	ring finger and FYVE-like domain containing E3 ubiquitin protein ligase	3171	0.15
chr20_30467211_30467720	0.05	TTLL9	tubulin tyrosine ligase-like family, member 9	167	0.93
chr3_159572063_159572214	0.05	SCHIP1	schwannomin interacting protein 1	1410	0.44
chr2_74726093_74726283	0.05	AC005041.17		306	0.59
chr1_6053839_6054115	0.05	KCNAB2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	1206	0.38
chr12_48295131_48295282	0.04	VDR	vitamin D (1,25- dihydroxyvitamin D3) receptor	3580	0.21
chr14_23292384_23292986	0.04	SLC7A7	solute carrier family 7 (amino acid transporter light chain, y+L system), member 7	65	0.91
chr12_865374_865579	0.04	WNK1	WNK lysine deficient protein kinase 1	2744	0.29
chr1_160694421_160694572	0.04	CD48	CD48 molecule	12855	0.15
chr5_40442466_40442675	0.04	ENSG00000265615	.	122150	0.06
chr8_56802041_56802192	0.04	RP11-318K15.2		4038	0.17
chr16_56624565_56624716	0.04	MT3	metallothionein 3	1188	0.28
chr10_21788929_21789081	0.04	CASC10	cancer susceptibility candidate 10	2814	0.17
chr8_26370627_26370798	0.04	PNMA2	paraneoplastic Ma antigen 2	896	0.46
chr2_148603094_148603503	0.04	ACVR2A	activin A receptor, type IIA	1113	0.55
chr7_80458996_80459147	0.04	SEMA3C	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	89428	0.1
chrX_107335383_107335582	0.03	ATG4A	autophagy related 4A, cysteine peptidase	464	0.57
chr14_91861774_91862603	0.03	CCDC88C	coiled-coil domain containing 88C	21502	0.21
chr7_66025936_66026087	0.03	KCTD7	potassium channel tetramerization domain containing 7	67857	0.09
chr3_170625046_170625197	0.03	EIF5A2	eukaryotic translation initiation factor 5A2	1266	0.51
chr3_57529803_57530341	0.03	DNAH12	dynein, axonemal, heavy chain 12	1	0.96
chr2_148554372_148554523	0.03	ACVR2A	activin A receptor, type IIA	47639	0.15
chr10_22629149_22629300	0.03	SPAG6	sperm associated antigen 6	5175	0.17
chr12_106532820_106532971	0.03	NUAK1	NUAK family, SNF1-like kinase, 1	916	0.65
chr13_36045165_36045339	0.03	MAB21L1	mab-21-like 1 (C. elegans)	5580	0.22
chr5_148929725_148929878	0.03	CSNK1A1	casein kinase 1, alpha 1	61	0.96
chrX_152927887_152928038	0.03	ENSG00000244335	.	3719	0.13
chr19_36630549_36630790	0.03	CAPNS1	calpain, small subunit 1	186	0.89
chr12_65600948_65601243	0.03	LEMD3	LEM domain containing 3	37744	0.16
chr11_32355420_32355641	0.03	WT1	Wilms tumor 1	66631	0.12
chr14_23630356_23630721	0.03	ENSG00000202229	.	4915	0.12
chr10_14900189_14900340	0.03	CDNF	cerebral dopamine neurotrophic factor	19690	0.15
chr21_42738143_42738294	0.03	MX2	myxovirus (influenza virus) resistance 2 (mouse)	3794	0.25
chr3_45783013_45783179	0.03	ENSG00000244357	.	1071	0.5
chr5_14129033_14129184	0.02	TRIO	trio Rho guanine nucleotide exchange factor	14703	0.3
chr13_113560364_113560515	0.02	MCF2L	MCF.2 cell line derived transforming sequence-like	3930	0.23
chr11_514795_514946	0.02	RNH1	ribonuclease/angiogenin inhibitor 1	7570	0.08
chr10_6579728_6580530	0.02	PRKCQ	protein kinase C, theta	42072	0.21
chr5_59284336_59284487	0.02	CTD-2254N19.1		32665	0.23
chr15_90754517_90755171	0.02	SEMA4B	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	10076	0.12
chr9_127031049_127031200	0.02	RP11-121A14.3		5969	0.18
chr16_24747560_24747740	0.02	TNRC6A	trinucleotide repeat containing 6A	6616	0.28
chr17_16301870_16302159	0.02	RP11-138I1.4		16031	0.12
chr5_141256597_141256905	0.02	PCDH1	protocadherin 1	1203	0.48
chr5_76382337_76382809	0.02	ZBED3-AS1	ZBED3 antisense RNA 1	8	0.88
chr9_81755503_81755654	0.02	TLE4	transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)	431110	0.01
chrX_123124561_123124722	0.02	STAG2	stromal antigen 2	27621	0.21
chr20_1644368_1644519	0.02	ENSG00000242348	.	2563	0.22
chr3_196471446_196471597	0.02	ENSG00000272359	.	2674	0.18
chr10_35639470_35639863	0.02	CCNY	cyclin Y	13864	0.2
chr12_122125138_122125289	0.02	MORN3	MORN repeat containing 3	17653	0.16
chr4_914129_914321	0.02	GAK	cyclin G associated kinase	4702	0.17
chr1_36008630_36009058	0.02	KIAA0319L	KIAA0319-like	11744	0.15
chr10_3028303_3028552	0.02	PFKP	phosphofructokinase, platelet	80098	0.11
chr1_46908511_46908921	0.02	RP5-1109J22.1		10915	0.18
chr12_94637273_94637424	0.02	PLXNC1	plexin C1	10946	0.18
chr16_58617014_58617165	0.02	CNOT1	CCR4-NOT transcription complex, subunit 1	8122	0.15
chr11_17298613_17298922	0.02	NUCB2	nucleobindin 2	197	0.95
chr7_152095363_152095514	0.01	ENSG00000253088	.	4427	0.25
chr18_23669463_23669743	0.01	SS18	synovial sarcoma translocation, chromosome 18	457	0.87
chr3_195150330_195150481	0.01	ENSG00000207368	.	10130	0.19
chr10_112180186_112180405	0.01	ENSG00000221359	.	13704	0.21
chr10_125784070_125784221	0.01	CHST15	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	22096	0.24
chr11_1675553_1675820	0.01	KRTAP5-5	keratin associated protein 5-5	24653	0.09
chr17_76136918_76137344	0.01	C17orf99	chromosome 17 open reading frame 99	5303	0.12
chr6_74232611_74232913	0.01	RP11-505P4.7		579	0.47
chr9_127133993_127134300	0.01	ENSG00000264237	.	21336	0.17
chr1_205561220_205561413	0.01	ENSG00000206762	.	2853	0.21
chr18_44526774_44527068	0.01	KATNAL2	katanin p60 subunit A-like 2	103	0.95
chr14_24025734_24026020	0.01	THTPA	thiamine triphosphatase	331	0.49
chr7_65300352_65300503	0.01	ENSG00000200670	.	20768	0.15
chr4_101464634_101464785	0.01	EMCN	endomucin	25459	0.26
chr19_40029250_40030224	0.01	EID2	EP300 interacting inhibitor of differentiation 2	1133	0.32
chr13_60067800_60067951	0.01	ENSG00000239003	.	13671	0.32
chr18_74718576_74718776	0.01	MBP	myelin basic protein	3402	0.31
chr10_129786129_129786485	0.01	PTPRE	protein tyrosine phosphatase, receptor type, E	699	0.77
chr3_10269802_10270219	0.01	ENSG00000222348	.	11114	0.12
chr1_25446820_25447086	0.01	RP4-706G24.1		87677	0.07
chr8_67940679_67940936	0.01	PPP1R42	protein phosphatase 1, regulatory subunit 42	21	0.97
chr4_109081453_109081912	0.01	LEF1	lymphoid enhancer-binding factor 1	5775	0.24
chr10_124608730_124608881	0.01	CUZD1	CUB and zona pellucida-like domains 1	1504	0.38
chr7_43698266_43698436	0.01	COA1	cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae)	8456	0.23
chr4_39700876_39701553	0.01	UBE2K	ubiquitin-conjugating enzyme E2K	1418	0.4
chr3_181418656_181418956	0.01	SOX2-OT	SOX2 overlapping transcript (non-protein coding)	1178	0.55
chr13_111123516_111123822	0.01	COL4A2-AS2	COL4A2 antisense RNA 2	8035	0.22
chr4_154713480_154713740	0.01	SFRP2	secreted frizzled-related protein 2	3338	0.26
chr7_535817_536099	0.01	PDGFA	platelet-derived growth factor alpha polypeptide	22187	0.19
chr4_76434081_76434232	0.01	THAP6	THAP domain containing 6	5000	0.21
chr19_15777024_15777175	0.01	CYP4F12	cytochrome P450, family 4, subfamily F, polypeptide 12	6468	0.18
chr2_38978217_38978435	0.01	SRSF7	serine/arginine-rich splicing factor 7	174	0.7
chr12_109197582_109197733	0.01	SSH1	slingshot protein phosphatase 1	22405	0.13
chr18_46887488_46887730	0.01	DYM	dymeclin	7458	0.22
chr4_54927756_54928028	0.01	AC110792.1	HCG2027126; Uncharacterized protein	679	0.65
chr7_102388056_102388207	0.01	FAM185A	family with sequence similarity 185, member A	1344	0.44
chr3_85008513_85008834	0.00	CADM2	cell adhesion molecule 2	24	0.99
chr1_154325026_154325247	0.00	ENSG00000238365	.	13917	0.1
chr20_52789414_52789702	0.00	CYP24A1	cytochrome P450, family 24, subfamily A, polypeptide 1	630	0.79
chr1_36557176_36557327	0.00	ADPRHL2	ADP-ribosylhydrolase like 2	2775	0.2
chr8_129243121_129243295	0.00	ENSG00000201782	.	10458	0.28
chr12_112546642_112546922	0.00	NAA25	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	44	0.97
chr3_72598996_72599234	0.00	ENSG00000238568	.	23001	0.2
chr15_63883849_63884000	0.00	USP3-AS1	USP3 antisense RNA 1	2670	0.27
chr21_47745359_47745818	0.00	PCNT	pericentrin	1552	0.26
chr8_29243512_29244126	0.00	RP4-676L2.1		33132	0.15
chr17_80263860_80264011	0.00	CD7	CD7 molecule	11493	0.11
chr6_12083621_12083772	0.00	HIVEP1	human immunodeficiency virus type I enhancer binding protein 1	42283	0.2
chr2_33311490_33311641	0.00	LTBP1	latent transforming growth factor beta binding protein 1	47908	0.17
chr12_94206603_94206759	0.00	ENSG00000264978	.	18171	0.19
chr15_40713920_40714255	0.00	IVD	isovaleryl-CoA dehydrogenase	5721	0.1
chr18_42788224_42788375	0.00	SLC14A2	solute carrier family 14 (urea transporter), member 2	4661	0.28
chr19_45972792_45973282	0.00	FOSB	FBJ murine osteosarcoma viral oncogene homolog B	97	0.94
chr10_28966894_28967045	0.00	BAMBI	BMP and activin membrane-bound inhibitor	698	0.68
chr3_100279906_100280202	0.00	GPR128	G protein-coupled receptor 128	48379	0.14
chr7_86973924_86974573	0.00	CROT	carnitine O-octanoyltransferase	749	0.74
chrX_77170418_77170569	0.00	ATP7A	ATPase, Cu++ transporting, alpha polypeptide	4294	0.18
chr2_101992396_101992547	0.00	CREG2	cellular repressor of E1A-stimulated genes 2	11586	0.22
chr19_42613495_42613654	0.00	POU2F2	POU class 2 homeobox 2	7465	0.1
chr20_43272276_43272496	0.00	ADA	adenosine deaminase	7946	0.14
chr6_5525547_5525698	0.00	RP1-232P20.1		67314	0.13
chr5_138641789_138641940	0.00	MATR3	matrin 3	1920	0.2
chr22_41439766_41439959	0.00	ENSG00000222698	.	1639	0.29
chr22_18172109_18172260	0.00	BCL2L13	BCL2-like 13 (apoptosis facilitator)	33706	0.14
chr3_128878659_128878903	0.00	ISY1-RAB43	ISY1-RAB43 readthrough	1098	0.3

Histogram of CRE-TSS distances for CREs targeted by :

Rank distribution of CRE target scores:

Distribution of target CREs across different genomic regions:

Network of associatons between targets according to the STRING database.

First level regulatory network of ZBED1

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Total log-likelihood	Term	Description
0.1	GO:0048388	endosomal lumen acidification(GO:0048388)
0.0	GO:0045541	negative regulation of cholesterol biosynthetic process(GO:0045541) negative regulation of cholesterol metabolic process(GO:0090206)
0.0	GO:0043461	proton-transporting ATP synthase complex assembly(GO:0043461) proton-transporting ATP synthase complex biogenesis(GO:0070272)