CRE | Gene | Distance | Association probability | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|---|---|
chr10_80490140_80490309 | Onecut3 | 4611 | 0.104768 | -0.02 | 9.0e-01 | Click! |
chr10_80490364_80490515 | Onecut3 | 4396 | 0.106456 | -0.13 | 3.5e-01 | Click! |
chr18_64339353_64339817 | Onecut2 | 435 | 0.808099 | -0.53 | 3.0e-05 | Click! |
chr18_64340169_64340496 | Onecut2 | 312 | 0.880196 | -0.47 | 2.8e-04 | Click! |
chr18_64342523_64342684 | Onecut2 | 2583 | 0.244673 | -0.51 | 5.9e-05 | Click! |
chr18_64350212_64350455 | Onecut2 | 10313 | 0.166845 | 0.57 | 5.0e-06 | Click! |
chr18_64350576_64350996 | Onecut2 | 10766 | 0.166067 | 0.56 | 1.1e-05 | Click! |
Cis Regulatory Element (CRE) | Target Score | Top associated gene | Gene Info | Distance of CRE to TSS | CRE/Gene association probability |
---|---|---|---|---|---|
chr14_64193921_64194220 | 25.79 |
9630015K15Rik |
RIKEN cDNA 9630015K15 gene |
77756 |
0.08 |
chr2_22587496_22588353 | 23.54 |
Gm13341 |
predicted gene 13341 |
38 |
0.95 |
chr4_41129904_41130072 | 22.30 |
Gm12402 |
predicted gene 12402 |
2856 |
0.14 |
chr4_140701770_140702866 | 20.93 |
Rcc2 |
regulator of chromosome condensation 2 |
845 |
0.47 |
chr10_128790514_128790671 | 20.44 |
Mmp19 |
matrix metallopeptidase 19 |
318 |
0.75 |
chr12_80976041_80976212 | 19.67 |
Slc10a1 |
solute carrier family 10 (sodium/bile acid cotransporter family), member 1 |
7421 |
0.15 |
chr5_115775514_115775677 | 19.27 |
Gm13841 |
predicted gene 13841 |
26564 |
0.14 |
chr5_114558159_114558686 | 18.69 |
Gm13790 |
predicted gene 13790 |
7133 |
0.17 |
chr19_37442831_37443030 | 18.44 |
Hhex |
hematopoietically expressed homeobox |
6191 |
0.13 |
chr7_26303634_26303785 | 18.28 |
Cyp2a4 |
cytochrome P450, family 2, subfamily a, polypeptide 4 |
3460 |
0.16 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 30.4 | GO:0006953 | acute-phase response(GO:0006953) |
0.1 | 21.5 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) |
0.0 | 17.6 | GO:0007608 | sensory perception of smell(GO:0007608) |
0.5 | 17.4 | GO:1903146 | regulation of mitophagy(GO:1903146) |
2.6 | 15.9 | GO:1902222 | L-phenylalanine catabolic process(GO:0006559) erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process(GO:1902222) |
0.5 | 15.7 | GO:0019373 | epoxygenase P450 pathway(GO:0019373) |
0.7 | 15.2 | GO:0030574 | collagen catabolic process(GO:0030574) |
2.9 | 14.5 | GO:0071918 | urea transmembrane transport(GO:0071918) |
1.0 | 13.3 | GO:0070935 | 3'-UTR-mediated mRNA stabilization(GO:0070935) |
1.2 | 13.1 | GO:0016540 | protein autoprocessing(GO:0016540) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 65.6 | GO:0005794 | Golgi apparatus(GO:0005794) |
0.1 | 59.7 | GO:0005654 | nucleoplasm(GO:0005654) |
0.1 | 58.1 | GO:0070062 | extracellular exosome(GO:0070062) |
0.1 | 42.7 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.1 | 38.2 | GO:0005739 | mitochondrion(GO:0005739) |
0.1 | 23.0 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.1 | 19.3 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.1 | 18.8 | GO:0042175 | nuclear outer membrane-endoplasmic reticulum membrane network(GO:0042175) |
0.1 | 17.0 | GO:0005813 | centrosome(GO:0005813) |
0.2 | 15.6 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 55.5 | GO:0002020 | protease binding(GO:0002020) |
0.2 | 32.6 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.2 | 29.3 | GO:0031267 | small GTPase binding(GO:0031267) |
0.5 | 24.6 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
0.0 | 24.0 | GO:0003723 | RNA binding(GO:0003723) |
0.1 | 22.2 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.0 | 21.4 | GO:0004984 | olfactory receptor activity(GO:0004984) |
0.6 | 15.6 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) aspartic-type peptidase activity(GO:0070001) |
0.3 | 15.5 | GO:0008392 | arachidonic acid epoxygenase activity(GO:0008392) |
0.2 | 14.7 | GO:0015399 | primary active transmembrane transporter activity(GO:0015399) P-P-bond-hydrolysis-driven transmembrane transporter activity(GO:0015405) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 38.5 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.2 | 32.2 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.5 | 16.1 | ST P38 MAPK PATHWAY | p38 MAPK Pathway |
0.3 | 16.0 | PID P73PATHWAY | p73 transcription factor network |
0.3 | 15.9 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.2 | 10.0 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.4 | 9.9 | PID BARD1 PATHWAY | BARD1 signaling events |
0.2 | 9.7 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.3 | 9.5 | SIG PIP3 SIGNALING IN B LYMPHOCYTES | Genes related to PIP3 signaling in B lymphocytes |
0.3 | 8.5 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 34.2 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.3 | 31.6 | REACTOME 3 UTR MEDIATED TRANSLATIONAL REGULATION | Genes involved in 3' -UTR-mediated translational regulation |
0.3 | 25.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.2 | 22.4 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
1.0 | 19.5 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.3 | 19.5 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.2 | 17.6 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.8 | 17.2 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.4 | 14.7 | REACTOME TRIGLYCERIDE BIOSYNTHESIS | Genes involved in Triglyceride Biosynthesis |
1.4 | 14.5 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |