CRE | Gene | Distance | Association probability | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|---|---|
chr1_165914170_165914334 | Pou2f1 | 969 | 0.475750 | 0.64 | 1.6e-07 | Click! |
chr1_165934649_165934837 | Pou2f1 | 157 | 0.941005 | 0.60 | 1.5e-06 | Click! |
chr1_165934961_165935308 | Pou2f1 | 123 | 0.952197 | 0.61 | 6.4e-07 | Click! |
chr1_165935347_165935547 | Pou2f1 | 436 | 0.785293 | 0.61 | 6.1e-07 | Click! |
chr1_165935548_165935799 | Pou2f1 | 662 | 0.639728 | 0.63 | 2.4e-07 | Click! |
Cis Regulatory Element (CRE) | Target Score | Top associated gene | Gene Info | Distance of CRE to TSS | CRE/Gene association probability |
---|---|---|---|---|---|
chr13_84905442_84905636 | 10.98 |
Gm4059 |
predicted gene 4059 |
68778 |
0.12 |
chr6_103944408_103944702 | 9.18 |
Gm21054 |
predicted gene, 21054 |
20084 |
0.27 |
chr13_52562127_52562509 | 9.17 |
Syk |
spleen tyrosine kinase |
20855 |
0.22 |
chr7_109039088_109039339 | 7.44 |
Tub |
tubby bipartite transcription factor |
11990 |
0.15 |
chr15_54256949_54257119 | 7.05 |
Tnfrsf11b |
tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin) |
21450 |
0.2 |
chr1_109512803_109512982 | 6.76 |
Gm28281 |
predicted gene 28281 |
62237 |
0.15 |
chr7_40825372_40825735 | 6.40 |
Gm45008 |
predicted gene 45008 |
4443 |
0.2 |
chr3_21672509_21672900 | 6.32 |
Gm17935 |
predicted gene, 17935 |
24317 |
0.19 |
chr6_101685845_101686005 | 6.28 |
Gm32453 |
predicted gene, 32453 |
33691 |
0.2 |
chr1_81594178_81594459 | 6.26 |
Gm6198 |
predicted gene 6198 |
36835 |
0.2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 6.7 | GO:0016082 | synaptic vesicle priming(GO:0016082) |
2.2 | 6.5 | GO:0097118 | neuroligin clustering involved in postsynaptic membrane assembly(GO:0097118) |
1.9 | 5.6 | GO:1901078 | negative regulation of relaxation of muscle(GO:1901078) |
0.7 | 5.1 | GO:0042118 | endothelial cell activation(GO:0042118) |
0.7 | 4.3 | GO:0098598 | vocal learning(GO:0042297) imitative learning(GO:0098596) learned vocalization behavior or vocal learning(GO:0098598) |
0.1 | 4.2 | GO:0021954 | central nervous system neuron development(GO:0021954) |
0.3 | 4.1 | GO:0042670 | retinal cone cell differentiation(GO:0042670) |
0.2 | 4.1 | GO:0071475 | cellular hyperosmotic salinity response(GO:0071475) |
1.0 | 4.0 | GO:0048023 | positive regulation of melanin biosynthetic process(GO:0048023) positive regulation of secondary metabolite biosynthetic process(GO:1900378) |
0.3 | 4.0 | GO:0035235 | ionotropic glutamate receptor signaling pathway(GO:0035235) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 15.6 | GO:0045211 | postsynaptic membrane(GO:0045211) |
0.3 | 10.3 | GO:0034704 | calcium channel complex(GO:0034704) |
0.1 | 7.0 | GO:0008021 | synaptic vesicle(GO:0008021) |
0.3 | 6.8 | GO:0044295 | axonal growth cone(GO:0044295) |
0.9 | 6.4 | GO:0098563 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.1 | 5.8 | GO:0008076 | voltage-gated potassium channel complex(GO:0008076) |
0.4 | 5.0 | GO:0043194 | axon initial segment(GO:0043194) |
0.5 | 4.3 | GO:0071437 | invadopodium(GO:0071437) |
0.2 | 4.3 | GO:0032839 | dendrite cytoplasm(GO:0032839) |
0.0 | 4.2 | GO:0030027 | lamellipodium(GO:0030027) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.9 | GO:0003729 | mRNA binding(GO:0003729) |
0.8 | 6.8 | GO:0001091 | RNA polymerase II basal transcription factor binding(GO:0001091) |
0.5 | 5.5 | GO:0005313 | L-glutamate transmembrane transporter activity(GO:0005313) |
0.2 | 5.5 | GO:0004119 | calmodulin-dependent cyclic-nucleotide phosphodiesterase activity(GO:0004117) cGMP-stimulated cyclic-nucleotide phosphodiesterase activity(GO:0004118) cGMP-inhibited cyclic-nucleotide phosphodiesterase activity(GO:0004119) photoreceptor cyclic-nucleotide phosphodiesterase activity(GO:0004120) 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate phosphodiesterase activity(GO:0044688) inositol phosphosphingolipid phospholipase activity(GO:0052712) inositol phosphorylceramide phospholipase activity(GO:0052713) mannosyl-inositol phosphorylceramide phospholipase activity(GO:0052714) mannosyl-diinositol phosphorylceramide phospholipase activity(GO:0052715) |
0.7 | 5.1 | GO:0003680 | AT DNA binding(GO:0003680) |
0.2 | 4.8 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.2 | 4.4 | GO:1905030 | voltage-gated sodium channel activity(GO:0005248) voltage-gated ion channel activity involved in regulation of postsynaptic membrane potential(GO:1905030) |
0.1 | 4.0 | GO:0004004 | ATP-dependent RNA helicase activity(GO:0004004) RNA-dependent ATPase activity(GO:0008186) |
0.2 | 3.8 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) aspartic-type peptidase activity(GO:0070001) |
0.4 | 3.7 | GO:0004383 | guanylate cyclase activity(GO:0004383) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.4 | PID IL2 1PATHWAY | IL2-mediated signaling events |
0.1 | 4.8 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.1 | 3.0 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.1 | 2.9 | PID FGF PATHWAY | FGF signaling pathway |
0.1 | 2.6 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.1 | 2.1 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.1 | 2.0 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.1 | 1.8 | PID MAPK TRK PATHWAY | Trk receptor signaling mediated by the MAPK pathway |
0.1 | 1.8 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.1 | 1.8 | PID LKB1 PATHWAY | LKB1 signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 10.4 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.2 | 6.5 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.3 | 6.4 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.1 | 4.2 | REACTOME RNA POL III TRANSCRIPTION | Genes involved in RNA Polymerase III Transcription |
0.1 | 4.2 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |
0.3 | 3.9 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GIP | Genes involved in Synthesis, Secretion, and Inactivation of Glucose-dependent Insulinotropic Polypeptide (GIP) |
0.2 | 3.9 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.3 | 3.8 | REACTOME UNBLOCKING OF NMDA RECEPTOR GLUTAMATE BINDING AND ACTIVATION | Genes involved in Unblocking of NMDA receptor, glutamate binding and activation |
0.1 | 3.7 | REACTOME POTASSIUM CHANNELS | Genes involved in Potassium Channels |
0.3 | 3.4 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |