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ENCODE: ATAC-seq of different tissues during embryonic development
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Results for Prdm4

Z-value: 0.81

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Transcription factors associated with Prdm4

Gene Symbol Gene ID Gene Info
Prdm4
ENSMUSG00000035529.9 PR domain containing 4

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

CRE Gene Distance Association probability Pearson corr. coef. P-value Plot
chr10_85916447_85916938Prdm4360.959499-0.038.2e-01Click!
chr10_85916960_85917579Prdm41270.9360070.038.4e-01Click!

Activity of the Prdm4 motif across conditions

Conditions sorted by the z-value of the Prdm4 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE) Target Score Top associated gene Gene Info Distance of CRE to TSS CRE/Gene association probability
chr2_12716268_12716419 6.84 Gm37565
 predicted gene, 37565
 18926
 0.27
chr2_106895717_106896104 6.36 Gm13901
 predicted gene 13901
 20861
 0.18
chr19_36534720_36535517 6.30 Hectd2
 HECT domain E3 ubiquitin protein ligase 2
 19521
 0.2
chr10_87419886_87420133 5.63 Gm23191
 predicted gene, 23191
 55863
 0.12
chr14_12716331_12716619 5.10 Gm48266
 predicted gene, 48266
 54075
 0.13
chr2_34486214_34486378 5.03 Mapkap1
 mitogen-activated protein kinase associated protein 1
 41949
 0.13
chr8_83876019_83876207 4.95 Adgrl1
 adhesion G protein-coupled receptor L1
 23992
 0.11
chr4_98108669_98109025 4.76 Gm12691
 predicted gene 12691
 37752
 0.2
chr11_96872828_96873000 4.63 Gm11523
 predicted gene 11523
 1020
 0.32
chr10_75032772_75033005 4.44 Rsph14
 radial spoke head homolog 14 (Chlamydomonas)
 302
 0.83
chr4_142449762_142450034 4.07 Gm13052
 predicted gene 13052
 103423
 0.07
chr6_87993885_87994594 3.90 4933412L11Rik
 RIKEN cDNA 4933412L11 gene
 60
 0.94
chr12_73476646_73476883 3.49 Gm48656
 predicted gene, 48656
 19857
 0.14
chr1_17145272_17145872 3.40 Gdap1
 ganglioside-induced differentiation-associated-protein 1
 104
 0.97
chr3_50881765_50882103 3.34 Gm37548
 predicted gene, 37548
 5125
 0.23
chr7_25006131_25006556 2.47 Atp1a3
 ATPase, Na+/K+ transporting, alpha 3 polypeptide
 385
 0.75
chr9_77496901_77497300 2.42 Lrrc1
 leucine rich repeat containing 1
 35344
 0.13
chr13_78162932_78163091 2.40 3110006O06Rik
 RIKEN cDNA 3110006O06 gene
 8619
 0.14
chr17_86090516_86090667 2.32 Srbd1
 S1 RNA binding domain 1
 29680
 0.2
chr17_25415423_25415610 2.15 Cacna1h
 calcium channel, voltage-dependent, T type, alpha 1H subunit
 17762
 0.1
chrX_166271526_166271872 1.74 Gpm6b
 glycoprotein m6b
 32727
 0.18
chr6_18446901_18447365 1.46 Gm26233
 predicted gene, 26233
 2207
 0.27
chr12_15803978_15804129 1.43 Mir6387
 microRNA 6387
 2952
 0.22
chr5_66919006_66919157 1.42 Gm43281
 predicted gene 43281
 3073
 0.2
chr5_100751704_100751855 1.36 Helq
 helicase, POLQ-like
 13659
 0.12
chr18_45896851_45897467 1.30 A330093E20Rik
 RIKEN cDNA A330093E20 gene
 650
 0.79
chr8_106288872_106289023 1.14 Gm10629
 predicted gene 10629
 5640
 0.17
chr7_45367404_45367868 1.12 Mtag2
 metastasis associated gene 2
 403
 0.35
chr3_104796052_104796791 1.08 Rhoc
 ras homolog family member C
 4438
 0.11
chr9_29802186_29802600 1.07 Ntm
 neurotrimin
 160726
 0.04
chr14_66911932_66912438 1.05 Pnma2
 paraneoplastic antigen MA2
 943
 0.5
chr19_4163611_4163806 1.03 Rps6kb2
 ribosomal protein S6 kinase, polypeptide 2
 354
 0.61
chr5_37857768_37858171 1.01 Msx1
 msh homeobox 1
 33386
 0.15
chr12_56275676_56275858 0.97 Gm47682
 predicted gene, 47682
 21369
 0.14
chr11_32225680_32226589 0.96 Mpg
 N-methylpurine-DNA glycosylase
 371
 0.76
chr5_135513193_135513444 0.91 Hip1
 huntingtin interacting protein 1
 24060
 0.12
chr15_103364800_103364960 0.84 Itga5
 integrin alpha 5 (fibronectin receptor alpha)
 1868
 0.21
chr17_43630277_43630503 0.76 Tdrd6
 tudor domain containing 6
 91
 0.96
chr17_16599832_16600015 0.74 Gm4786
 predicted gene 4786
 42677
 0.17
chr8_111033356_111033544 0.65 Aars
 alanyl-tRNA synthetase
 306
 0.77
chr12_3960175_3960559 0.62 Pomc
 pro-opiomelanocortin-alpha
 5397
 0.16
chr4_69677391_69677542 0.58 Gm11221
 predicted gene 11221
 14512
 0.3
chr5_92504695_92505420 0.57 Scarb2
 scavenger receptor class B, member 2
 580
 0.71
chr8_40962071_40962251 0.57 Pdgfrl
 platelet-derived growth factor receptor-like
 35928
 0.12
chr13_8272239_8272390 0.56 Gm48259
 predicted gene, 48259
 6290
 0.16
chr2_74680840_74680991 0.56 Hoxd11
 homeobox D11
 1358
 0.15
chr10_108589383_108589571 0.55 Syt1
 synaptotagmin I
 47487
 0.16
chr19_56232294_56232445 0.54 Gm22271
 predicted gene, 22271
 45276
 0.15
chr3_69494373_69494539 0.53 Ppm1l
 protein phosphatase 1 (formerly 2C)-like
 2757
 0.3
chr15_36580548_36581460 0.49 Gm44310
 predicted gene, 44310
 2540
 0.2
chr5_20196771_20197178 0.48 Magi2
 membrane associated guanylate kinase, WW and PDZ domain containing 2
 5595
 0.26
chr15_11802561_11802718 0.48 Npr3
 natriuretic peptide receptor 3
 88349
 0.07
chr12_55017115_55017266 0.47 Baz1a
 bromodomain adjacent to zinc finger domain 1A
 2842
 0.17
chr14_23401177_23401361 0.46 Gm46443
 predicted gene, 46443
 80125
 0.1
chr3_116807637_116808371 0.44 Agl
 amylo-1,6-glucosidase, 4-alpha-glucanotransferase
 27
 0.96
chr15_30192048_30192225 0.43 Ctnnd2
 catenin (cadherin associated protein), delta 2
 18998
 0.26
chr14_58036330_58036481 0.41 Gm9012
 predicted gene 9012
 13418
 0.16
chr1_172309995_172310636 0.41 Igsf8
 immunoglobulin superfamily, member 8
 1456
 0.25
chr1_154190200_154190368 0.36 Zfp648
 zinc finger protein 648
 10903
 0.2
chr12_29654946_29655405 0.33 C630031E19Rik
 RIKEN cDNA C630031E19 gene
 31270
 0.22
chr17_90454113_90455767 0.33 Gm10493
 predicted gene 10493
 51
 0.59
chr7_49262055_49262574 0.32 Nav2
 neuron navigator 2
 15469
 0.22
chr19_48651754_48651957 0.31 Sorcs3
 sortilin-related VPS10 domain containing receptor 3
 52361
 0.18
chr2_39004398_39004813 0.29 Rpl35
 ribosomal protein L35
 438
 0.55
chr10_85101930_85102186 0.28 Fhl4
 four and a half LIM domains 4
 437
 0.55
chr11_12373481_12373753 0.24 Cobl
 cordon-bleu WH2 repeat
 3925
 0.32
chr18_10182315_10182716 0.22 Rock1
 Rho-associated coiled-coil containing protein kinase 1
 470
 0.73
chr7_119895286_119895984 0.18 Dcun1d3
 DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
 92
 0.69
chr14_13519590_13519953 0.17 Synpr
 synaptoporin
 65742
 0.13
chr9_65176034_65176763 0.17 Igdcc3
 immunoglobulin superfamily, DCC subclass, member 3
 4340
 0.15
chr18_78982246_78983042 0.16 Setbp1
 SET binding protein 1
 126747
 0.06
chr13_63046746_63046908 0.16 Aopep
 aminopeptidase O
 21288
 0.16
chr3_89244716_89244980 0.15 Trim46
 tripartite motif-containing 46
 165
 0.82
chr5_147076781_147077681 0.15 Polr1d
 polymerase (RNA) I polypeptide D
 115
 0.89
chr7_4087343_4087494 0.15 Gm23741
 predicted gene, 23741
 14472
 0.09
chr5_71011194_71011626 0.14 Gabra2
 gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2
 2274
 0.46
chr1_161070573_161071029 0.13 Cenpl
 centromere protein L
 34
 0.61
chr1_85308637_85309019 0.13 Gm16025
 predicted gene 16025
 17901
 0.11
chr4_105364618_105364769 0.12 Gm12722
 predicted gene 12722
 10253
 0.3
chr2_90893779_90893948 0.12 Gm32514
 predicted gene, 32514
 665
 0.52
chr8_120290806_120290957 0.08 Gse1
 genetic suppressor element 1, coiled-coil protein
 62425
 0.1
chr13_113589648_113589945 0.07 Gm34471
 predicted gene, 34471
 22029
 0.15
chr3_122072745_122072896 0.06 Abca4
 ATP-binding cassette, sub-family A (ABC1), member 4
 1634
 0.37
chr3_83025861_83026012 0.06 Fga
 fibrinogen alpha chain
 140
 0.94
chr10_60692133_60692313 0.04 Cdh23
 cadherin 23 (otocadherin)
 4267
 0.26
chr18_61637596_61638529 0.04 Bvht
 braveheart long non-coding RNA
 1480
 0.27
chr7_144788527_144789274 0.03 Gm34964
 predicted gene, 34964
 2908
 0.15
chr6_16697126_16697277 0.01 Gm36669
 predicted gene, 36669
 80323
 0.1
chr1_86059453_86059994 0.01 Psmd1
 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
 4664
 0.13
chr8_84104026_84104482 0.01 Dcaf15
 DDB1 and CUL4 associated factor 15
 508
 0.56

Histogram of CRE-TSS distances for CREs targeted by :

Histogram of

Rank distribution of CRE target scores:

Histogram of target CRE score.

Distribution of target CREs across different genomic regions:

Weighted Piechart of Weighted Piechart of Weighted Piechart of

Network of associatons between targets according to the STRING database.

First level regulatory network of Prdm4

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.9 GO:0086036 regulation of cardiac muscle cell membrane potential(GO:0086036)
0.2 0.5 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
0.2 0.5 GO:0021550 medulla oblongata development(GO:0021550)
0.2 3.3 GO:0008053 mitochondrial fusion(GO:0008053)
0.1 0.3 GO:0097118 neuroligin clustering involved in postsynaptic membrane assembly(GO:0097118)
0.1 0.3 GO:0051611 negative regulation of neurotransmitter uptake(GO:0051581) regulation of serotonin uptake(GO:0051611) negative regulation of serotonin uptake(GO:0051612)
0.1 0.2 GO:0045074 interleukin-10 biosynthetic process(GO:0042091) regulation of interleukin-10 biosynthetic process(GO:0045074)
0.1 0.2 GO:2000304 positive regulation of sphingolipid biosynthetic process(GO:0090154) positive regulation of ceramide biosynthetic process(GO:2000304)
0.1 0.2 GO:0051562 negative regulation of mitochondrial calcium ion concentration(GO:0051562)
0.1 0.5 GO:0090129 positive regulation of synapse maturation(GO:0090129)
0.0 0.1 GO:2001055 embryonic nail plate morphogenesis(GO:0035880) activation of meiosis(GO:0090427) positive regulation of mesenchymal cell apoptotic process(GO:2001055)
0.0 0.3 GO:0006559 L-phenylalanine catabolic process(GO:0006559) erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process(GO:1902222)
0.0 0.2 GO:2000344 positive regulation of acrosome reaction(GO:2000344)
0.0 0.1 GO:0030167 proteoglycan catabolic process(GO:0030167)
0.0 0.2 GO:1903347 apical constriction(GO:0003383) negative regulation of bicellular tight junction assembly(GO:1903347)
0.0 0.4 GO:0006622 protein targeting to lysosome(GO:0006622)
0.0 0.6 GO:0045948 positive regulation of translational initiation(GO:0045948)
0.0 0.1 GO:0080154 regulation of fertilization(GO:0080154)
0.0 0.1 GO:0071374 cellular response to parathyroid hormone stimulus(GO:0071374)
0.0 0.2 GO:0071569 protein ufmylation(GO:0071569)
0.0 0.2 GO:0021796 cerebral cortex regionalization(GO:0021796)
0.0 0.0 GO:0035405 histone-threonine phosphorylation(GO:0035405)
0.0 0.4 GO:0005980 glycogen catabolic process(GO:0005980) glucan catabolic process(GO:0009251) cellular polysaccharide catabolic process(GO:0044247)
0.0 0.2 GO:0070863 positive regulation of protein exit from endoplasmic reticulum(GO:0070863)
0.0 0.1 GO:2000852 corticosterone secretion(GO:0035934) regulation of corticosterone secretion(GO:2000852)
0.0 0.1 GO:0021564 vagus nerve development(GO:0021564)
0.0 0.1 GO:1902564 negative regulation of neutrophil activation(GO:1902564)
0.0 0.1 GO:0042699 follicle-stimulating hormone signaling pathway(GO:0042699)
0.0 0.1 GO:1903361 protein localization to basolateral plasma membrane(GO:1903361)
0.0 0.1 GO:0043985 histone H4-R3 methylation(GO:0043985)
0.0 0.1 GO:0070889 platelet alpha granule organization(GO:0070889)
0.0 0.1 GO:0035279 mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing(GO:0098795)
0.0 0.2 GO:0002087 regulation of respiratory gaseous exchange by neurological system process(GO:0002087)
0.0 0.3 GO:0045956 positive regulation of calcium ion-dependent exocytosis(GO:0045956)
0.0 0.2 GO:0034723 DNA replication-dependent nucleosome assembly(GO:0006335) DNA replication-dependent nucleosome organization(GO:0034723)
0.0 0.1 GO:0043152 induction of bacterial agglutination(GO:0043152)
0.0 0.7 GO:0006284 base-excision repair(GO:0006284)
0.0 0.2 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.0 0.1 GO:0042364 water-soluble vitamin biosynthetic process(GO:0042364)
0.0 0.1 GO:1900029 positive regulation of ruffle assembly(GO:1900029)
0.0 0.1 GO:0071684 blastocyst hatching(GO:0001835) hatching(GO:0035188) organism emergence from protective structure(GO:0071684)
0.0 0.0 GO:2000721 positive regulation of transcription from RNA polymerase II promoter involved in smooth muscle cell differentiation(GO:2000721)
0.0 0.2 GO:0033631 cell-cell adhesion mediated by integrin(GO:0033631)
0.0 0.1 GO:0070213 protein auto-ADP-ribosylation(GO:0070213)
0.0 0.1 GO:0050861 negative regulation of glial cell apoptotic process(GO:0034351) positive regulation of B cell receptor signaling pathway(GO:0050861)
0.0 0.1 GO:2000623 regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:2000622) negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:2000623)
0.0 0.0 GO:0035694 mitochondrial protein catabolic process(GO:0035694)
0.0 0.1 GO:0010225 response to UV-C(GO:0010225)
0.0 0.1 GO:1902837 amino acid import into cell(GO:1902837)
0.0 0.2 GO:0048172 regulation of short-term neuronal synaptic plasticity(GO:0048172)
0.0 0.0 GO:2000313 fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation(GO:0060825) regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation(GO:2000313)
0.0 0.0 GO:2000418 positive regulation of eosinophil migration(GO:2000418)
0.0 0.0 GO:0006987 activation of signaling protein activity involved in unfolded protein response(GO:0006987)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.9 GO:0044326 dendritic spine neck(GO:0044326)
0.2 3.3 GO:0031307 integral component of mitochondrial outer membrane(GO:0031307)
0.1 0.4 GO:0043202 lysosomal lumen(GO:0043202)
0.1 0.7 GO:0031932 TORC2 complex(GO:0031932)
0.1 0.7 GO:0033391 chromatoid body(GO:0033391)
0.0 0.3 GO:0030126 COPI vesicle coat(GO:0030126)
0.0 0.1 GO:0005952 cAMP-dependent protein kinase complex(GO:0005952)
0.0 0.2 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 0.1 GO:1990357 terminal web(GO:1990357)
0.0 0.1 GO:0036056 filtration diaphragm(GO:0036056) slit diaphragm(GO:0036057)
0.0 0.7 GO:0042645 nucleoid(GO:0009295) mitochondrial nucleoid(GO:0042645)
0.0 0.1 GO:0098563 integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563)
0.0 0.2 GO:1904949 ATPase complex(GO:1904949)
0.0 0.8 GO:0042734 presynaptic membrane(GO:0042734)
0.0 0.1 GO:0071203 WASH complex(GO:0071203)
0.0 0.1 GO:0001940 male pronucleus(GO:0001940)
0.0 0.1 GO:0042587 glycogen granule(GO:0042587)
0.0 0.0 GO:1990246 uniplex complex(GO:1990246)
0.0 0.2 GO:0048786 presynaptic active zone(GO:0048786)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.9 GO:0103116 alpha-D-galactofuranose transporter activity(GO:0103116)
0.2 0.5 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.1 3.3 GO:0004364 glutathione transferase activity(GO:0004364)
0.1 0.3 GO:0004505 phenylalanine 4-monooxygenase activity(GO:0004505)
0.1 0.3 GO:0004699 calcium-independent protein kinase C activity(GO:0004699)
0.1 0.2 GO:0008332 low voltage-gated calcium channel activity(GO:0008332)
0.1 0.1 GO:0097109 neuroligin family protein binding(GO:0097109)
0.1 0.2 GO:0005519 cytoskeletal regulatory protein binding(GO:0005519)
0.1 0.1 GO:0031697 beta-1 adrenergic receptor binding(GO:0031697)
0.1 0.7 GO:0003905 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methylbase glycosylase activity(GO:0043733)
0.1 0.6 GO:0004711 ribosomal protein S6 kinase activity(GO:0004711)
0.1 0.2 GO:0017116 single-stranded DNA-dependent ATP-dependent DNA helicase activity(GO:0017116)
0.1 0.6 GO:0070300 phosphatidic acid binding(GO:0070300)
0.0 0.1 GO:0004691 cAMP-dependent protein kinase activity(GO:0004691)
0.0 0.5 GO:0015643 toxic substance binding(GO:0015643)
0.0 0.1 GO:0070996 type 1 melanocortin receptor binding(GO:0070996)
0.0 0.1 GO:0004566 beta-glucuronidase activity(GO:0004566)
0.0 0.2 GO:0097371 MDM2/MDM4 family protein binding(GO:0097371)
0.0 0.2 GO:0004767 sphingomyelin phosphodiesterase activity(GO:0004767)
0.0 0.1 GO:0008503 benzodiazepine receptor activity(GO:0008503)
0.0 0.1 GO:0035241 protein-arginine omega-N monomethyltransferase activity(GO:0035241) histone methyltransferase activity (H4-R3 specific)(GO:0044020)
0.0 0.4 GO:0001871 pattern binding(GO:0001871) polysaccharide binding(GO:0030247)
0.0 0.1 GO:0044323 retinoic acid-responsive element binding(GO:0044323)
0.0 0.5 GO:0043425 bHLH transcription factor binding(GO:0043425)
0.0 0.2 GO:0055106 ubiquitin-protein transferase regulator activity(GO:0055106)
0.0 0.1 GO:1990226 histone methyltransferase binding(GO:1990226)
0.0 0.4 GO:0001205 transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001205)
0.0 0.0 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886) DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates(GO:0051718)
0.0 0.1 GO:0004994 somatostatin receptor activity(GO:0004994)
0.0 0.0 GO:0016941 natriuretic peptide receptor activity(GO:0016941)
0.0 0.1 GO:0097602 cullin family protein binding(GO:0097602)
0.0 0.1 GO:0001054 RNA polymerase I activity(GO:0001054)
0.0 0.1 GO:0002094 polyprenyltransferase activity(GO:0002094)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.8 PID PI3KCI AKT PATHWAY Class I PI3K signaling events mediated by Akt
0.0 0.2 PID LPA4 PATHWAY LPA4-mediated signaling events
0.0 0.3 PID PRL SIGNALING EVENTS PATHWAY Signaling events mediated by PRL
0.0 0.7 PID ERA GENOMIC PATHWAY Validated nuclear estrogen receptor alpha network
0.0 0.5 PID HES HEY PATHWAY Notch-mediated HES/HEY network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 REACTOME BASE FREE SUGAR PHOSPHATE REMOVAL VIA THE SINGLE NUCLEOTIDE REPLACEMENT PATHWAY Genes involved in Base-free sugar-phosphate removal via the single-nucleotide replacement pathway
0.1 1.9 REACTOME ION TRANSPORT BY P TYPE ATPASES Genes involved in Ion transport by P-type ATPases
0.0 1.3 REACTOME PIP3 ACTIVATES AKT SIGNALING Genes involved in PIP3 activates AKT signaling
0.0 0.4 REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS Genes involved in Glycogen breakdown (glycogenolysis)
0.0 0.5 REACTOME CYTOSOLIC TRNA AMINOACYLATION Genes involved in Cytosolic tRNA aminoacylation
0.0 0.2 REACTOME PEPTIDE HORMONE BIOSYNTHESIS Genes involved in Peptide hormone biosynthesis
0.0 0.3 REACTOME DAG AND IP3 SIGNALING Genes involved in DAG and IP3 signaling
0.0 0.3 REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE Genes involved in Sema4D induced cell migration and growth-cone collapse