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ENCSR904DTN: DNase-seq of mouse liver in constant darkness
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CREMA is a free online tool that recognizes most important transcription factors that change the chromatin state across different samples.

Results for Etv6

Z-value: 1.60

Motif logo

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Transcription factors associated with Etv6

Gene Symbol Gene ID Gene Info
ENSMUSG00000030199.10 Etv6

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

GenePromoterDistanceAssociation probabilityPearson corr. coef.P-valuePlot
Etv6chr6_134039206_13403940733370.250610-0.971.2e-03Click!
Etv6chr6_134271340_134271530238700.1499710.911.2e-02Click!
Etv6chr6_134036525_1340367336600.723229-0.891.8e-02Click!
Etv6chr6_134036923_13403734011620.507613-0.872.6e-02Click!
Etv6chr6_134045191_13404535593040.1909620.843.7e-02Click!

Activity of the Etv6 motif across conditions

Conditions sorted by the z-value of the Etv6 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE) Target Score Top associated gene Gene Info Distance of CRE to TSS CRE/Gene association probability
chr1_156523955_156524106 0.84 Csnk2a3
casein kinase 2 alpha 3
18
0.97
chr14_20319722_20320198 0.75 Nudt13
nudix (nucleoside diphosphate linked moiety X)-type motif 13
8531
0.12
chr9_45677619_45677770 0.71 Dscaml1
DS cell adhesion molecule like 1
4857
0.22
chr5_116024413_116024572 0.68 Prkab1
protein kinase, AMP-activated, beta 1 non-catalytic subunit
16
0.96
chr14_20315223_20315409 0.67 Nudt13
nudix (nucleoside diphosphate linked moiety X)-type motif 13
3887
0.15
chrX_60547467_60547618 0.67 Gm715
predicted gene 715
477
0.75
chr1_171418992_171419158 0.65 Tstd1
thiosulfate sulfurtransferase (rhodanese)-like domain containing 1
42
0.93
chr7_4792782_4792944 0.62 Rpl28
ribosomal protein L28
11
0.93
chr10_58255342_58255504 0.57 Gcc2
GRIP and coiled-coil domain containing 2
74
0.96
chr4_136886108_136886460 0.57 C1qb
complement component 1, q subcomponent, beta polypeptide
97
0.96
chr8_105297519_105297695 0.53 E2f4
E2F transcription factor 4
56
0.9
chr5_33658354_33658511 0.53 Tmem129
transmembrane protein 129
16
0.6
chr11_85492360_85492531 0.53 Bcas3
breast carcinoma amplified sequence 3
123
0.95
chr10_116264669_116264820 0.52 Ptprb
protein tyrosine phosphatase, receptor type, B
10779
0.19
chr7_48917526_48917677 0.52 Gm45282
predicted gene 45282
7539
0.14
chr10_75834373_75834559 0.50 Gstt2
glutathione S-transferase, theta 2
3
0.95
chr2_27540118_27540305 0.49 Gm13421
predicted gene 13421
215
0.57
chr11_88204256_88204424 0.49 Mrps23
mitochondrial ribosomal protein S23
48
0.97
chr2_3727636_3727853 0.48 Fam107b
family with sequence similarity 107, member B
14266
0.16
chr11_5485683_5486034 0.47 Gm11962
predicted gene 11962
9588
0.14
chr9_107563062_107563244 0.46 Tusc2
tumor suppressor 2, mitochondrial calcium regulator
102
0.87
chr16_89830199_89830569 0.45 Tiam1
T cell lymphoma invasion and metastasis 1
7491
0.3
chr5_125361058_125361209 0.45 Gm40323
predicted gene, 40323
42
0.96
chr11_69554847_69555031 0.45 Efnb3
ephrin B3
5266
0.08
chr2_94010737_94010899 0.44 Alkbh3
alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
11
0.97
chr6_120822682_120822842 0.44 Atp6v1e1
ATPase, H+ transporting, lysosomal V1 subunit E1
31
0.97
chr3_109255070_109255263 0.44 Gm13865
predicted gene 13865
62299
0.11
chr13_21362713_21362885 0.43 Zscan12
zinc finger and SCAN domain containing 12
21
0.94
chr5_105112436_105112587 0.43 Gbp9
guanylate-binding protein 9
2234
0.28
chr8_11009560_11009740 0.42 Irs2
insulin receptor substrate 2
1192
0.34
chr17_20945145_20945356 0.42 Ppp2r1a
protein phosphatase 2, regulatory subunit A, alpha
61
0.54
chr1_133610283_133610442 0.41 Snrpe
small nuclear ribonucleoprotein E
71
0.96
chr5_3490465_3490637 0.41 Gm42435
predicted gene 42435
9521
0.13
chr1_180226517_180226708 0.41 Psen2
presenilin 2
2956
0.19
chr17_27839932_27840089 0.41 Snrpc
U1 small nuclear ribonucleoprotein C
74
0.95
chr2_58516954_58517105 0.40 Acvr1
activin A receptor, type 1
757
0.71
chr11_86757488_86757692 0.40 Cltc
clathrin, heavy polypeptide (Hc)
25
0.98
chr10_128805402_128805563 0.40 Dnajc14
DnaJ heat shock protein family (Hsp40) member C14
72
0.91
chr15_79670588_79670885 0.39 Tomm22
translocase of outer mitochondrial membrane 22
125
0.91
chr7_105744339_105744512 0.38 Taf10
TATA-box binding protein associated factor 10
64
0.94
chr10_13008300_13008462 0.38 Sf3b5
splicing factor 3b, subunit 5
3038
0.25
chr8_94183485_94183637 0.38 Gm39228
predicted gene, 39228
272
0.83
chr7_99483674_99483841 0.38 Rps3
ribosomal protein S3
19
0.93
chr10_59629065_59629266 0.37 Mcu
mitochondrial calcium uniporter
12473
0.19
chr9_65032284_65032455 0.37 Dpp8
dipeptidylpeptidase 8
45
0.97
chr10_10457121_10457304 0.37 Gm48326
predicted gene, 48326
8322
0.2
chr11_70764308_70764498 0.36 Zfp3
zinc finger protein 3
194
0.85
chr11_5955636_5955797 0.36 Ykt6
YKT6 v-SNARE homolog (S. cerevisiae)
23
0.97
chr2_31052576_31052733 0.36 Fnbp1
formin binding protein 1
2790
0.24
chr1_97770025_97770211 0.36 Gin1
gypsy retrotransposon integrase 1
54
0.8
chr1_74289444_74289611 0.36 Gm37503
predicted gene, 37503
1667
0.15
chr4_95354053_95354288 0.36 Gm29064
predicted gene 29064
48620
0.15
chr14_51884664_51884952 0.36 Mettl17
methyltransferase like 17
34
0.94
chr9_20581222_20581545 0.35 Zfp846
zinc finger protein 846
58
0.96
chr11_3452291_3452451 0.35 8430429K09Rik
RIKEN cDNA 8430429K09 gene
6
0.49
chr5_145201795_145201971 0.35 Zkscan14
zinc finger with KRAB and SCAN domains 14
15
0.95
chr16_3872258_3872624 0.35 Zfp597
zinc finger protein 597
45
0.51
chr9_110887920_110888088 0.35 Als2cl
ALS2 C-terminal like
9
0.95
chr19_42631725_42631876 0.35 Loxl4
lysyl oxidase-like 4
18987
0.18
chr2_94406648_94406807 0.34 Ttc17
tetratricopeptide repeat domain 17
38
0.91
chr1_167308570_167308761 0.34 Tmco1
transmembrane and coiled-coil domains 1
5
0.96
chr13_52041479_52041668 0.33 Gm37872
predicted gene, 37872
19646
0.19
chr18_67448711_67448888 0.33 Afg3l2
AFG3-like AAA ATPase 2
308
0.86
chr11_78245899_78246053 0.32 Supt6
SPT6, histone chaperone and transcription elongation factor
11
0.73
chr9_46272980_46273140 0.32 Zpr1
ZPR1 zinc finger
4
0.94
chr2_32535355_32535730 0.32 Fam102a
family with sequence similarity 102, member A
183
0.89
chr19_45006439_45006606 0.32 Twnk
twinkle mtDNA helicase
36
0.53
chr8_77610687_77610852 0.31 Tmem184c
transmembrane protein 184C
71
0.52
chr14_122104924_122105095 0.31 A330035P11Rik
RIKEN cDNA A330035P11 gene
1944
0.21
chr15_8109190_8109363 0.31 Nup155
nucleoporin 155
3
0.98
chr19_28963790_28963966 0.30 4430402I18Rik
RIKEN cDNA 4430402I18 gene
30
0.54
chr8_33885650_33885854 0.30 Gm26978
predicted gene, 26978
5
0.97
chr11_77793325_77793488 0.30 Gm10277
predicted gene 10277
5659
0.16
chr17_33948663_33948832 0.30 B3galt4
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4
2741
0.06
chr7_99694503_99694673 0.30 Gm34280
predicted gene, 34280
291
0.76
chr9_20521327_20521505 0.30 Zfp266
zinc finger protein 266
1
0.96
chr19_53332014_53332179 0.29 Mxi1
MAX interactor 1, dimerization protein
1688
0.28
chr9_20952862_20953022 0.29 Dnmt1
DNA methyltransferase (cytosine-5) 1
37
0.95
chr17_36271362_36271517 0.29 Trim39
tripartite motif-containing 39
56
0.91
chr2_27626035_27626261 0.29 Rxra
retinoid X receptor alpha
50292
0.12
chr9_124424078_124424238 0.28 Ppp2r3d
protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
4
0.97
chr15_34443209_34443373 0.28 Rpl30
ribosomal protein L30
32
0.8
chr3_95217667_95217848 0.28 Gabpb2
GA repeat binding protein, beta 2
3
0.79
chr13_64398164_64398509 0.28 Ctsl
cathepsin L
27446
0.09
chr10_14705498_14705660 0.28 Nmbr
neuromedin B receptor
12
0.5
chr4_125066548_125066718 0.27 Snip1
Smad nuclear interacting protein 1
39
0.93
chr5_146770278_146770441 0.27 Usp12
ubiquitin specific peptidase 12
11903
0.15
chr4_124802426_124802586 0.27 Mtf1
metal response element binding transcription factor 1
43
0.95
chr4_133941503_133941734 0.27 Hmgn2
high mobility group nucleosomal binding domain 2
25625
0.11
chr4_48279558_48279880 0.27 Invs
inversin
41
0.66
chr17_26113206_26113368 0.27 Tmem8
transmembrane protein 8
12
0.94
chr1_182520133_182520312 0.27 Capn2
calpain 2
2614
0.21
chr12_108792186_108792364 0.27 Gm34220
predicted gene, 34220
468
0.53
chr3_95871479_95871654 0.27 C920021L13Rik
RIKEN cDNA C920021L13 gene
35
0.49
chr6_125009567_125009728 0.27 Zfp384
zinc finger protein 384
22
0.94
chr4_81766890_81767041 0.27 Gm11412
predicted gene 11412
23819
0.23
chr15_64060280_64060431 0.26 Fam49b
family with sequence similarity 49, member B
12
0.98
chr2_121473990_121474147 0.26 Mfap1b
microfibrillar-associated protein 1B
1
0.94
chr2_29935294_29935462 0.26 Gle1
GLE1 RNA export mediator (yeast)
48
0.95
chr15_66865965_66866140 0.26 Ccn4
cellular communication network factor 4
25268
0.16
chr1_192770564_192770748 0.26 Hhat
hedgehog acyltransferase
336
0.87
chr11_95146239_95146409 0.26 Dlx4
distal-less homeobox 4
61
0.95
chr17_35241635_35241803 0.25 Ddx39b
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
27
0.88
chr16_31948445_31948606 0.25 Ncbp2
nuclear cap binding protein subunit 2
12
0.49
chr11_77078417_77078807 0.25 Nsrp1
nuclear speckle regulatory protein 1
177
0.75
chr6_35539812_35539979 0.25 Mtpn
myotrophin
7
0.98
chr13_46669359_46669525 0.25 Fam8a1
family with sequence similarity 8, member A1
80
0.97
chr17_46621404_46621583 0.25 Ptk7
PTK7 protein tyrosine kinase 7
8011
0.1
chr4_120975511_120975682 0.25 Smap2
small ArfGAP 2
112
0.94
chr11_94653678_94653838 0.25 Mrpl27
mitochondrial ribosomal protein L27
9
0.56
chr17_31305538_31305732 0.25 Slc37a1
solute carrier family 37 (glycerol-3-phosphate transporter), member 1
92
0.96
chr17_8310765_8311153 0.25 4930506C21Rik
RIKEN cDNA 4930506C21 gene
93
0.41
chr14_26669821_26669989 0.25 Pde12
phosphodiesterase 12
22
0.52
chr11_83298893_83299082 0.24 Pex12
peroxisomal biogenesis factor 12
10
0.5
chr16_16526849_16527032 0.24 Fgd4
FYVE, RhoGEF and PH domain containing 4
471
0.82
chr7_79228544_79228706 0.24 Gm31510
predicted gene, 31510
44186
0.1
chr1_167353970_167354146 0.24 Aldh9a1
aldehyde dehydrogenase 9, subfamily A1
3746
0.15
chr17_49458493_49458669 0.24 Mocs1
molybdenum cofactor synthesis 1
6297
0.24
chr6_126107373_126107694 0.24 Ntf3
neurotrophin 3
57427
0.15
chr12_55155236_55155394 0.24 Srp54b
signal recognition particle 54B
55
0.85
chr7_45434250_45434440 0.24 Ruvbl2
RuvB-like protein 2
68
0.83
chr10_81606036_81606372 0.23 BC025920
cDNA sequence BC025920
66
0.93
chr15_98506392_98506556 0.23 Olfr278-ps1
olfactory receptor 278, pseudogene 1
7069
0.07
chr3_108256959_108257142 0.23 1700010K24Rik
RIKEN cDNA 1700010K24 gene
65
0.56
chr5_9087032_9087225 0.23 Tmem243
transmembrane protein 243, mitochondrial
13540
0.16
chr2_91412402_91412624 0.23 Gm22071
predicted gene, 22071
5377
0.18
chr7_45923080_45923254 0.23 Ccdc114
coiled-coil domain containing 114
905
0.25
chr2_145934675_145934834 0.23 Cfap61
cilia and flagella associated protein 61
30
0.5
chr12_55080388_55080552 0.23 Srp54a
signal recognition particle 54A
56
0.82
chr5_105789979_105790426 0.23 Rps15a-ps5
ribosomal protein S15A, pseudogene 5
7511
0.17
chr8_120324733_120324902 0.22 Gse1
genetic suppressor element 1, coiled-coil protein
96361
0.06
chrX_168673452_168673623 0.22 Msl3
MSL complex subunit 3
361
0.91
chr8_84856734_84857027 0.22 Farsa
phenylalanyl-tRNA synthetase, alpha subunit
109
0.9
chr7_28796738_28796906 0.22 Rinl
Ras and Rab interactor-like
116
0.91
chr3_101524513_101524690 0.22 Atp1a1
ATPase, Na+/K+ transporting, alpha 1 polypeptide
52959
0.11
chr1_36244254_36244418 0.22 Uggt1
UDP-glucose glycoprotein glucosyltransferase 1
31
0.97
chr9_78489041_78489208 0.22 Eef1a1
eukaryotic translation elongation factor 1 alpha 1
27
0.96
chr6_52160159_52160321 0.22 Hotairm1
Hoxa transcript antisense RNA, myeloid-specific 1
1716
0.12
chr8_10857974_10858150 0.22 Gm32540
predicted gene, 32540
8124
0.12
chr11_46039470_46039639 0.22 Gm12165
predicted gene 12165
3114
0.18
chr19_5366591_5366746 0.21 Banf1
BAF nuclear assembly factor 1
62
0.49
chr2_75978121_75978296 0.21 Ttc30a2
tetratricopeptide repeat domain 30A2
38
0.97
chr2_48814064_48814223 0.21 Acvr2a
activin receptor IIA
34
0.98
chr11_48800219_48800381 0.21 Rack1
receptor for activated C kinase 1
32
0.88
chr17_26663048_26663210 0.20 Atp6v0e
ATPase, H+ transporting, lysosomal V0 subunit E
102
0.96
chr19_8770923_8771084 0.20 Tmem223
transmembrane protein 223
7
0.87
chr9_41105205_41105372 0.20 Gm48611
predicted gene, 48611
6793
0.17
chr8_69808918_69809151 0.20 Gmip
Gem-interacting protein
344
0.77
chr16_91740939_91741112 0.20 Itsn1
intersectin 1 (SH3 domain protein 1A)
10791
0.14
chrX_7841056_7841418 0.20 Otud5
OTU domain containing 5
127
0.91
chr17_33915764_33916103 0.20 Zbtb22
zinc finger and BTB domain containing 22
29
0.48
chrX_12376263_12376437 0.20 Gm14635
predicted gene 14635
21354
0.24
chr10_80129893_80130054 0.20 Stk11
serine/threonine kinase 11
3291
0.11
chr5_122318215_122318386 0.20 Gm15842
predicted gene 15842
15878
0.1
chr11_78436121_78436295 0.20 Gm11195
predicted gene 11195
7899
0.09
chr2_19004905_19005068 0.20 4930426L09Rik
RIKEN cDNA 4930426L09 gene
6643
0.22
chr1_118321721_118321879 0.19 Nifk
nucleolar protein interacting with the FHA domain of MKI67
39
0.97
chr9_20951552_20951703 0.19 Dnmt1
DNA methyltransferase (cytosine-5) 1
978
0.34
chr1_171113920_171114112 0.19 Cfap126
cilia and flagella associated protein 126
27
0.95
chr17_26916833_26917013 0.19 Kifc5b
kinesin family member C5B
168
0.87
chr13_17993285_17993442 0.19 Yae1d1
Yae1 domain containing 1
14
0.93
chr9_43210448_43210605 0.19 Pou2f3
POU domain, class 2, transcription factor 3
157
0.94
chr9_37348340_37348499 0.18 Ccdc15
coiled-coil domain containing 15
13
0.96
chr7_126695761_126695919 0.18 Slx1b
SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)
56
0.57
chr12_25239865_25240032 0.18 Gm19340
predicted gene, 19340
42647
0.13
chr19_46136477_46136807 0.18 Pitx3
paired-like homeodomain transcription factor 3
647
0.58
chr6_124965441_124965599 0.18 Cops7a
COP9 signalosome subunit 7A
8
0.93
chr2_71039832_71040019 0.18 Dcaf17
DDB1 and CUL4 associated factor 17
15403
0.19
chr5_143758154_143758320 0.18 D130017N08Rik
RIKEN cDNA D130017N08 gene
117
0.96
chr2_84714853_84715028 0.18 Zdhhc5
zinc finger, DHHC domain containing 5
96
0.92
chr6_48708145_48708369 0.18 Gimap6
GTPase, IMAP family member 6
32
0.93
chr3_107850765_107850942 0.18 Gm36211
predicted gene, 36211
17314
0.08
chr9_49486024_49486190 0.18 Ttc12
tetratricopeptide repeat domain 12
108
0.97
chr10_80320493_80320652 0.18 2310011J03Rik
RIKEN cDNA 2310011J03 gene
35
0.92
chr6_91877905_91878069 0.18 Gm44712
predicted gene 44712
2
0.54
chr11_58330593_58330753 0.17 Sh3bp5l
SH3 binding domain protein 5 like
51
0.81
chr10_22731356_22731520 0.17 Tbpl1
TATA box binding protein-like 1
9
0.72
chr6_92042166_92042321 0.17 Fgd5
FYVE, RhoGEF and PH domain containing 5
25186
0.13
chr13_52024582_52024974 0.17 Gm37872
predicted gene, 37872
2851
0.3
chr18_60848929_60849091 0.17 Tcof1
treacle ribosome biogenesis factor 1
39
0.97
chr2_60878102_60878265 0.17 Rbms1
RNA binding motif, single stranded interacting protein 1
3255
0.35
chr10_80151775_80151933 0.17 Midn
midnolin
616
0.5
chr10_128547738_128547893 0.17 Zc3h10
zinc finger CCCH type containing 10
41
0.91
chr5_100663119_100663274 0.17 Coq2
coenzyme Q2 4-hydroxybenzoate polyprenyltransferase
1223
0.4
chr12_7946863_7947014 0.17 Gm48633
predicted gene, 48633
3123
0.25
chr10_67285195_67285355 0.17 Nrbf2
nuclear receptor binding factor 2
30
0.97
chr4_44065513_44065687 0.17 Gne
glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
1320
0.35
chr2_26493017_26493193 0.16 Notch1
notch 1
10717
0.1
chr13_56588544_56588882 0.16 2010203P06Rik
RIKEN cDNA 2010203P06 gene
6824
0.18
chr1_132362082_132362267 0.16 Tmcc2
transmembrane and coiled-coil domains 2
2774
0.18
chr11_4849530_4849684 0.16 Nf2
neurofibromin 2
71
0.97
chr11_84867701_84867877 0.16 Ggnbp2
gametogenetin binding protein 2
2413
0.18
chr11_73137165_73137468 0.16 Haspin
histone H3 associated protein kinase
978
0.41
chr2_90904641_90904800 0.16 Ndufs3
NADH:ubiquinone oxidoreductase core subunit S3
18
0.49
chr11_16508132_16508289 0.16 Sec61g
SEC61, gamma subunit
44
0.98
chr7_128237495_128237652 0.16 Armc5
armadillo repeat containing 5
216
0.67
chr11_9373284_9373435 0.16 Abca13
ATP-binding cassette, sub-family A (ABC1), member 13
179908
0.03
chrX_107816272_107816433 0.16 2610002M06Rik
RIKEN cDNA 2610002M06 gene
18
0.62
chr16_25052954_25053153 0.16 A230028O05Rik
RIKEN cDNA A230028O05 gene
6586
0.32
chr3_94886891_94887048 0.16 Psmb4
proteasome (prosome, macropain) subunit, beta type 4
8
0.96

Histogram of CRE-TSS distances for CREs targeted by :

Histogram of

Rank distribution of CRE target scores:

Histogram of target CRE score.

Distribution of target CREs across different genomic regions:

Weighted Piechart of Weighted Piechart of Weighted Piechart of

Network of associatons between targets according to the STRING database.

StringDB image

First level regulatory network of Etv6

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0034499 late endosome to Golgi transport(GO:0034499)
0.1 0.4 GO:0035553 oxidative RNA demethylation(GO:0035513) oxidative single-stranded RNA demethylation(GO:0035553)
0.1 0.4 GO:0052173 response to defenses of other organism involved in symbiotic interaction(GO:0052173) response to host defenses(GO:0052200) response to host(GO:0075136)
0.1 0.4 GO:1900126 negative regulation of hyaluronan biosynthetic process(GO:1900126)
0.1 0.3 GO:0090309 positive regulation of methylation-dependent chromatin silencing(GO:0090309)
0.1 0.3 GO:0030576 Cajal body organization(GO:0030576)
0.1 0.3 GO:0045041 protein import into mitochondrial intermembrane space(GO:0045041)
0.1 0.3 GO:2000017 positive regulation of determination of dorsal identity(GO:2000017)
0.1 0.4 GO:2001270 regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis(GO:2001270)
0.1 0.2 GO:0061086 negative regulation of histone H3-K27 methylation(GO:0061086)
0.1 0.4 GO:0000395 mRNA 5'-splice site recognition(GO:0000395)
0.1 0.3 GO:0006432 phenylalanyl-tRNA aminoacylation(GO:0006432)
0.1 0.2 GO:0090579 transcriptional activation by promoter-enhancer looping(GO:0071733) gene looping(GO:0090202) dsDNA loop formation(GO:0090579)
0.1 0.4 GO:0015074 DNA integration(GO:0015074)
0.1 0.4 GO:0045040 protein import into mitochondrial outer membrane(GO:0045040)
0.1 0.2 GO:0070601 centromeric sister chromatid cohesion(GO:0070601)
0.1 0.2 GO:2000002 negative regulation of DNA damage checkpoint(GO:2000002)
0.1 0.2 GO:0042998 positive regulation of Golgi to plasma membrane protein transport(GO:0042998)
0.1 0.3 GO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery(GO:0000972)
0.1 0.1 GO:0072429 response to intra-S DNA damage checkpoint signaling(GO:0072429)
0.1 0.4 GO:0070365 hepatocyte differentiation(GO:0070365)
0.1 0.1 GO:0035262 gonad morphogenesis(GO:0035262)
0.1 0.2 GO:0046881 positive regulation of follicle-stimulating hormone secretion(GO:0046881)
0.0 0.2 GO:0030035 microspike assembly(GO:0030035)
0.0 0.2 GO:0006449 regulation of translational termination(GO:0006449)
0.0 0.5 GO:0000083 regulation of transcription involved in G1/S transition of mitotic cell cycle(GO:0000083)
0.0 0.2 GO:0015712 hexose phosphate transport(GO:0015712) glucose-6-phosphate transport(GO:0015760)
0.0 0.2 GO:0060971 embryonic heart tube left/right pattern formation(GO:0060971)
0.0 0.1 GO:0046075 dTTP biosynthetic process(GO:0006235) pyrimidine deoxyribonucleoside triphosphate biosynthetic process(GO:0009212) dTTP metabolic process(GO:0046075)
0.0 0.2 GO:1903977 positive regulation of glial cell migration(GO:1903977)
0.0 0.3 GO:2000059 negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:2000059)
0.0 0.5 GO:0051895 negative regulation of focal adhesion assembly(GO:0051895)
0.0 0.1 GO:1904431 positive regulation of t-circle formation(GO:1904431)
0.0 0.1 GO:0006714 sesquiterpenoid metabolic process(GO:0006714)
0.0 0.1 GO:2000015 regulation of determination of dorsal identity(GO:2000015)
0.0 0.1 GO:0036444 calcium ion transmembrane import into mitochondrion(GO:0036444)
0.0 0.1 GO:0045048 protein insertion into ER membrane(GO:0045048) tail-anchored membrane protein insertion into ER membrane(GO:0071816)
0.0 0.1 GO:0036493 positive regulation of translation in response to endoplasmic reticulum stress(GO:0036493)
0.0 0.1 GO:0045869 negative regulation of single stranded viral RNA replication via double stranded DNA intermediate(GO:0045869)
0.0 0.1 GO:1903232 melanosome assembly(GO:1903232)
0.0 0.2 GO:0017196 N-terminal peptidyl-methionine acetylation(GO:0017196)
0.0 0.1 GO:0097039 protein linear polyubiquitination(GO:0097039)
0.0 0.1 GO:0032687 negative regulation of interferon-alpha production(GO:0032687)
0.0 0.4 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.0 0.2 GO:0000338 protein deneddylation(GO:0000338)
0.0 0.1 GO:0098789 pre-mRNA cleavage required for polyadenylation(GO:0098789)
0.0 0.1 GO:2000857 positive regulation of mineralocorticoid secretion(GO:2000857) positive regulation of aldosterone secretion(GO:2000860)
0.0 0.1 GO:0043201 response to leucine(GO:0043201) cellular response to leucine(GO:0071233)
0.0 0.1 GO:1903774 positive regulation of viral budding via host ESCRT complex(GO:1903774)
0.0 0.1 GO:0021564 vagus nerve development(GO:0021564)
0.0 0.7 GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient(GO:0015988) ATP hydrolysis coupled proton transport(GO:0015991) ATP hydrolysis coupled transmembrane transport(GO:0090662)
0.0 0.1 GO:0045341 MHC class I biosynthetic process(GO:0045341) regulation of MHC class I biosynthetic process(GO:0045343) positive regulation of MHC class I biosynthetic process(GO:0045345)
0.0 0.2 GO:0030953 astral microtubule organization(GO:0030953)
0.0 0.1 GO:0002314 germinal center B cell differentiation(GO:0002314)
0.0 0.1 GO:0071712 ER-associated misfolded protein catabolic process(GO:0071712)
0.0 0.0 GO:0055005 ventricular cardiac myofibril assembly(GO:0055005)
0.0 0.1 GO:0033132 negative regulation of glucokinase activity(GO:0033132) negative regulation of hexokinase activity(GO:1903300)
0.0 0.1 GO:0061635 regulation of protein complex stability(GO:0061635)
0.0 0.1 GO:0009298 GDP-mannose biosynthetic process(GO:0009298)
0.0 0.2 GO:2000786 positive regulation of autophagosome assembly(GO:2000786)
0.0 0.1 GO:0030242 pexophagy(GO:0030242)
0.0 0.1 GO:0006056 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506) cell wall biogenesis(GO:0042546) cell wall macromolecule biosynthetic process(GO:0044038) chain elongation of O-linked mannose residue(GO:0044845) cellular component macromolecule biosynthetic process(GO:0070589)
0.0 0.1 GO:0031293 membrane protein intracellular domain proteolysis(GO:0031293)
0.0 0.2 GO:0042790 transcription of nuclear large rRNA transcript from RNA polymerase I promoter(GO:0042790)
0.0 0.2 GO:0043922 negative regulation by host of viral transcription(GO:0043922)
0.0 0.2 GO:0016338 calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules(GO:0016338)
0.0 0.0 GO:0007403 glial cell fate determination(GO:0007403)
0.0 0.3 GO:0046686 response to cadmium ion(GO:0046686)
0.0 0.6 GO:0006958 complement activation, classical pathway(GO:0006958)
0.0 0.1 GO:0071985 multivesicular body sorting pathway(GO:0071985)
0.0 0.1 GO:0052490 negative regulation by symbiont of host apoptotic process(GO:0033668) negative regulation by symbiont of host programmed cell death(GO:0052041) negative regulation by organism of programmed cell death in other organism involved in symbiotic interaction(GO:0052490)
0.0 0.1 GO:0042518 negative regulation of tyrosine phosphorylation of Stat3 protein(GO:0042518)
0.0 0.4 GO:0018345 protein palmitoylation(GO:0018345)
0.0 0.0 GO:0090230 regulation of centromere complex assembly(GO:0090230)
0.0 0.0 GO:0009750 response to fructose(GO:0009750) cellular response to fructose stimulus(GO:0071332)
0.0 0.3 GO:0030970 retrograde protein transport, ER to cytosol(GO:0030970)
0.0 0.1 GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000447)
0.0 0.1 GO:0006013 mannose metabolic process(GO:0006013)
0.0 0.1 GO:0070900 mitochondrial tRNA modification(GO:0070900) mitochondrial RNA modification(GO:1900864)
0.0 0.0 GO:0042117 monocyte activation(GO:0042117)
0.0 0.1 GO:1904262 negative regulation of TORC1 signaling(GO:1904262)
0.0 0.1 GO:2000504 positive regulation of blood vessel remodeling(GO:2000504)
0.0 0.1 GO:0032000 positive regulation of fatty acid beta-oxidation(GO:0032000)
0.0 0.0 GO:0097252 oligodendrocyte apoptotic process(GO:0097252)
0.0 0.2 GO:0044406 adhesion of symbiont to host(GO:0044406)
0.0 0.0 GO:0070340 detection of bacterial lipopeptide(GO:0070340)
0.0 0.2 GO:0043984 histone H4-K16 acetylation(GO:0043984)
0.0 0.1 GO:0032790 ribosome disassembly(GO:0032790)
0.0 0.4 GO:0006904 vesicle docking involved in exocytosis(GO:0006904)
0.0 0.0 GO:0001920 negative regulation of receptor recycling(GO:0001920)
0.0 0.2 GO:0002862 negative regulation of inflammatory response to antigenic stimulus(GO:0002862)
0.0 0.0 GO:0090666 scaRNA localization to Cajal body(GO:0090666)
0.0 0.1 GO:0006930 substrate-dependent cell migration, cell extension(GO:0006930)
0.0 0.0 GO:0046341 CDP-diacylglycerol metabolic process(GO:0046341)
0.0 0.1 GO:0051131 chaperone-mediated protein complex assembly(GO:0051131)
0.0 0.0 GO:0072321 chaperone-mediated protein transport(GO:0072321)
0.0 0.1 GO:0016558 protein import into peroxisome matrix(GO:0016558)
0.0 0.2 GO:1903427 negative regulation of reactive oxygen species biosynthetic process(GO:1903427)
0.0 0.0 GO:0046104 thymidine metabolic process(GO:0046104)
0.0 0.3 GO:0007032 endosome organization(GO:0007032)
0.0 0.1 GO:0000056 ribosomal small subunit export from nucleus(GO:0000056)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0031523 Myb complex(GO:0031523)
0.1 0.4 GO:0097441 basilar dendrite(GO:0097441)
0.1 0.3 GO:0044611 nuclear pore inner ring(GO:0044611)
0.1 0.3 GO:0097504 Gemini of coiled bodies(GO:0097504)
0.1 0.3 GO:0048179 activin receptor complex(GO:0048179)
0.1 0.3 GO:0005745 m-AAA complex(GO:0005745)
0.1 0.4 GO:0000125 PCAF complex(GO:0000125)
0.1 0.3 GO:0044614 nuclear pore cytoplasmic filaments(GO:0044614)
0.1 0.2 GO:0034673 inhibin-betaglycan-ActRII complex(GO:0034673)
0.1 0.3 GO:0097255 R2TP complex(GO:0097255)
0.1 0.2 GO:0097543 ciliary inversin compartment(GO:0097543)
0.1 0.4 GO:0005786 signal recognition particle, endoplasmic reticulum targeting(GO:0005786) signal recognition particle(GO:0048500)
0.1 0.5 GO:0005687 U4 snRNP(GO:0005687)
0.1 0.2 GO:0072487 MSL complex(GO:0072487)
0.0 0.3 GO:0000243 commitment complex(GO:0000243)
0.0 0.3 GO:0008290 F-actin capping protein complex(GO:0008290)
0.0 0.5 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.4 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.0 0.5 GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain(GO:0033178)
0.0 0.2 GO:0042406 extrinsic component of endoplasmic reticulum membrane(GO:0042406)
0.0 0.1 GO:0071818 BAT3 complex(GO:0071818) ER membrane insertion complex(GO:0072379)
0.0 0.7 GO:0005763 organellar small ribosomal subunit(GO:0000314) mitochondrial small ribosomal subunit(GO:0005763)
0.0 0.2 GO:0035032 phosphatidylinositol 3-kinase complex, class III(GO:0035032)
0.0 0.1 GO:0071797 LUBAC complex(GO:0071797)
0.0 0.1 GO:0042825 TAP complex(GO:0042825)
0.0 0.1 GO:0035867 alphav-beta3 integrin-IGF-1-IGF1R complex(GO:0035867)
0.0 0.3 GO:0001527 microfibril(GO:0001527)
0.0 0.2 GO:0020005 symbiont-containing vacuole membrane(GO:0020005)
0.0 0.1 GO:1990246 uniplex complex(GO:1990246)
0.0 0.2 GO:0036513 Derlin-1 retrotranslocation complex(GO:0036513)
0.0 0.2 GO:0033179 proton-transporting V-type ATPase, V0 domain(GO:0033179)
0.0 0.1 GO:0036488 CHOP-C/EBP complex(GO:0036488)
0.0 0.1 GO:0048476 Holliday junction resolvase complex(GO:0048476)
0.0 0.3 GO:0005721 pericentric heterochromatin(GO:0005721)
0.0 0.1 GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane(GO:0071458) integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553)
0.0 0.0 GO:0033647 host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648)
0.0 0.2 GO:0060091 kinocilium(GO:0060091)
0.0 0.1 GO:1990130 Iml1 complex(GO:1990130)
0.0 0.1 GO:0031502 dolichyl-phosphate-mannose-protein mannosyltransferase complex(GO:0031502)
0.0 0.8 GO:0015935 small ribosomal subunit(GO:0015935)
0.0 0.2 GO:0032045 guanyl-nucleotide exchange factor complex(GO:0032045)
0.0 0.1 GO:0070847 core mediator complex(GO:0070847)
0.0 0.1 GO:0071014 post-mRNA release spliceosomal complex(GO:0071014)
0.0 0.1 GO:1990745 EARP complex(GO:1990745)
0.0 0.2 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 0.1 GO:0005845 mRNA cap binding complex(GO:0005845) RNA cap binding complex(GO:0034518)
0.0 0.9 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.0 0.1 GO:0030478 actin cap(GO:0030478)
0.0 0.1 GO:0034709 methylosome(GO:0034709)
0.0 0.0 GO:0097136 Bcl-2 family protein complex(GO:0097136)
0.0 0.2 GO:0005839 proteasome core complex(GO:0005839)
0.0 0.2 GO:0005779 integral component of peroxisomal membrane(GO:0005779)
0.0 0.2 GO:0035327 transcriptionally active chromatin(GO:0035327)
0.0 0.1 GO:0097197 tetraspanin-enriched microdomain(GO:0097197)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0035515 oxidative RNA demethylase activity(GO:0035515)
0.1 0.3 GO:0000702 oxidized base lesion DNA N-glycosylase activity(GO:0000702)
0.1 0.3 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886) DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates(GO:0051718)
0.1 0.4 GO:0032051 clathrin light chain binding(GO:0032051)
0.1 0.4 GO:0030942 endoplasmic reticulum signal peptide binding(GO:0030942)
0.1 0.5 GO:0017002 activin-activated receptor activity(GO:0017002)
0.1 0.7 GO:1990446 U1 snRNP binding(GO:1990446)
0.1 0.2 GO:0015119 hexose phosphate transmembrane transporter activity(GO:0015119) organophosphate:inorganic phosphate antiporter activity(GO:0015315) hexose-phosphate:inorganic phosphate antiporter activity(GO:0015526) glucose 6-phosphate:inorganic phosphate antiporter activity(GO:0061513)
0.1 0.2 GO:0030621 U4 snRNA binding(GO:0030621)
0.1 0.5 GO:1904264 ubiquitin protein ligase activity involved in ERAD pathway(GO:1904264)
0.1 0.3 GO:0004826 phenylalanine-tRNA ligase activity(GO:0004826)
0.1 0.2 GO:0016309 1-phosphatidylinositol-5-phosphate 4-kinase activity(GO:0016309)
0.0 0.2 GO:0035368 selenocysteine insertion sequence binding(GO:0035368)
0.0 0.1 GO:0004946 bombesin receptor activity(GO:0004946)
0.0 0.1 GO:0035650 AP-1 adaptor complex binding(GO:0035650)
0.0 0.2 GO:0030292 protein tyrosine kinase inhibitor activity(GO:0030292)
0.0 0.5 GO:0008601 protein phosphatase type 2A regulator activity(GO:0008601)
0.0 0.4 GO:0015266 protein channel activity(GO:0015266)
0.0 0.7 GO:0046961 proton-transporting ATPase activity, rotational mechanism(GO:0046961)
0.0 0.1 GO:0046978 TAP1 binding(GO:0046978) TAP2 binding(GO:0046979)
0.0 0.1 GO:1990430 extracellular matrix protein binding(GO:1990430)
0.0 1.0 GO:0035035 histone acetyltransferase binding(GO:0035035)
0.0 0.5 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.0 0.5 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.1 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.0 0.1 GO:0016635 oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor(GO:0016635)
0.0 0.5 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.0 0.3 GO:0004176 ATP-dependent peptidase activity(GO:0004176)
0.0 0.2 GO:0001094 TFIID-class transcription factor binding(GO:0001094)
0.0 0.1 GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor(GO:0016899)
0.0 0.5 GO:0019706 protein-cysteine S-palmitoyltransferase activity(GO:0019706)
0.0 0.3 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 0.1 GO:0017108 5'-flap endonuclease activity(GO:0017108)
0.0 0.1 GO:1990381 ubiquitin-specific protease binding(GO:1990381)
0.0 0.1 GO:0004720 protein-lysine 6-oxidase activity(GO:0004720)
0.0 0.2 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.0 0.1 GO:0002094 polyprenyltransferase activity(GO:0002094)
0.0 0.1 GO:0052658 inositol-1,4,5-trisphosphate 5-phosphatase activity(GO:0052658)
0.0 0.1 GO:0004839 ubiquitin activating enzyme activity(GO:0004839)
0.0 0.6 GO:0031369 translation initiation factor binding(GO:0031369)
0.0 0.1 GO:0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen(GO:0016714)
0.0 0.4 GO:0050780 dopamine receptor binding(GO:0050780)
0.0 0.2 GO:0004596 peptide alpha-N-acetyltransferase activity(GO:0004596)
0.0 0.0 GO:0032139 dinucleotide insertion or deletion binding(GO:0032139)
0.0 0.1 GO:0052723 inositol hexakisphosphate kinase activity(GO:0000828) inositol hexakisphosphate 5-kinase activity(GO:0000832) inositol hexakisphosphate 1-kinase activity(GO:0052723) inositol hexakisphosphate 3-kinase activity(GO:0052724)
0.0 0.1 GO:0070728 leucine binding(GO:0070728)
0.0 0.1 GO:0015386 sodium:proton antiporter activity(GO:0015385) potassium:proton antiporter activity(GO:0015386)
0.0 0.2 GO:0030676 Rac guanyl-nucleotide exchange factor activity(GO:0030676)
0.0 0.3 GO:0004298 threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003)
0.0 0.1 GO:0008599 protein phosphatase type 1 regulator activity(GO:0008599)
0.0 0.0 GO:0051434 BH3 domain binding(GO:0051434)
0.0 0.4 GO:0004177 aminopeptidase activity(GO:0004177)
0.0 0.2 GO:0003746 translation elongation factor activity(GO:0003746)
0.0 0.0 GO:0002046 opsin binding(GO:0002046)
0.0 0.3 GO:0017112 Rab guanyl-nucleotide exchange factor activity(GO:0017112)
0.0 0.2 GO:0016922 ligand-dependent nuclear receptor binding(GO:0016922)
0.0 0.1 GO:0047631 ADP-ribose diphosphatase activity(GO:0047631)
0.0 0.4 GO:0030331 estrogen receptor binding(GO:0030331)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.1 PID NFAT 3PATHWAY Role of Calcineurin-dependent NFAT signaling in lymphocytes
0.0 0.5 SA REG CASCADE OF CYCLIN EXPR Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases.
0.0 0.3 PID ALK2 PATHWAY ALK2 signaling events
0.0 0.4 PID MYC PATHWAY C-MYC pathway
0.0 0.8 PID LKB1 PATHWAY LKB1 signaling events
0.0 0.1 PID TCR JNK PATHWAY JNK signaling in the CD4+ TCR pathway
0.0 0.1 PID EPHB FWD PATHWAY EPHB forward signaling
0.0 0.2 PID HEDGEHOG 2PATHWAY Signaling events mediated by the Hedgehog family
0.0 0.4 PID FAS PATHWAY FAS (CD95) signaling pathway
0.0 0.2 PID ALK1 PATHWAY ALK1 signaling events
0.0 0.2 PID AVB3 OPN PATHWAY Osteopontin-mediated events
0.0 0.1 PID ERBB2 ERBB3 PATHWAY ErbB2/ErbB3 signaling events
0.0 0.1 PID ARF6 DOWNSTREAM PATHWAY Arf6 downstream pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 REACTOME CREATION OF C4 AND C2 ACTIVATORS Genes involved in Creation of C4 and C2 activators
0.0 0.5 REACTOME REGULATION OF RHEB GTPASE ACTIVITY BY AMPK Genes involved in Regulation of Rheb GTPase activity by AMPK
0.0 0.4 REACTOME GAP JUNCTION DEGRADATION Genes involved in Gap junction degradation
0.0 0.4 REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs
0.0 0.9 REACTOME G1 PHASE Genes involved in G1 Phase
0.0 0.1 REACTOME APOBEC3G MEDIATED RESISTANCE TO HIV1 INFECTION Genes involved in APOBEC3G mediated resistance to HIV-1 infection
0.0 0.4 REACTOME INSULIN RECEPTOR RECYCLING Genes involved in Insulin receptor recycling
0.0 1.5 REACTOME PEPTIDE CHAIN ELONGATION Genes involved in Peptide chain elongation
0.0 0.2 REACTOME CALNEXIN CALRETICULIN CYCLE Genes involved in Calnexin/calreticulin cycle
0.0 0.1 REACTOME RETROGRADE NEUROTROPHIN SIGNALLING Genes involved in Retrograde neurotrophin signalling
0.0 0.1 REACTOME ACTIVATION OF CHAPERONE GENES BY ATF6 ALPHA Genes involved in Activation of Chaperone Genes by ATF6-alpha
0.0 0.2 REACTOME DSCAM INTERACTIONS Genes involved in DSCAM interactions
0.0 0.1 REACTOME PECAM1 INTERACTIONS Genes involved in PECAM1 interactions
0.0 0.3 REACTOME REGULATION OF GLUCOKINASE BY GLUCOKINASE REGULATORY PROTEIN Genes involved in Regulation of Glucokinase by Glucokinase Regulatory Protein
0.0 0.1 REACTOME ORGANIC CATION ANION ZWITTERION TRANSPORT Genes involved in Organic cation/anion/zwitterion transport
0.0 0.1 REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS Genes involved in Membrane binding and targetting of GAG proteins
0.0 0.1 REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS Genes involved in Activation of the AP-1 family of transcription factors