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ENCSR904DTN: DNase-seq of mouse liver in constant darkness

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CREMA is a free online tool that recognizes most important transcription factors that change the chromatin state across different samples.

Results for Glis3

Z-value: 0.28

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Transcription factors associated with Glis3

Gene Symbol	Gene ID	Gene Info
Glis3 Ensembl NCBI MGI UniProt	ENSMUSG00000052942.7	Glis3
Glis3 Ensembl NCBI MGI UniProt	ENSMUSG00000091294.1	Glis3

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

Gene	Promoter	Distance	Association probability	Pearson corr. coef.	P-value	Plot
Glis3	chr19_28520868_28521034	19469	0.235136	-0.70	1.2e-01	Click!
Glis3	chr19_28656986_28657167	9609	0.196316	-0.66	1.5e-01	Click!
Glis3	chr19_28530943_28531108	9395	0.254385	-0.50	3.1e-01	Click!
Glis3	chr19_28347532_28347702	21611	0.263215	-0.16	7.6e-01	Click!
Glis3	chr19_28678405_28678738	119	0.771688	-0.14	8.0e-01	Click!

Activity of the Glis3 motif across conditions

Conditions sorted by the z-value of the Glis3 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE)	Target Score	Top associated gene	Gene Info	Distance of CRE to TSS	CRE/Gene association probability
chr1_131276568_131276872	0.18	Ikbke	inhibitor of kappaB kinase epsilon	7	0.96
chr10_83324464_83324615	0.11	Slc41a2	solute carrier family 41, member 2	1656	0.34
chr13_44640104_44640258	0.10	Gm47805	predicted gene, 47805	17999	0.21
chr10_21689999_21690150	0.09	Gm5420	predicted gene 5420	771	0.7
chr17_12402301_12402715	0.09	Plg	plasminogen	23849	0.15
chr7_16793142_16793312	0.09	Slc1a5	solute carrier family 1 (neutral amino acid transporter), member 5	50	0.95
chr1_121474052_121474217	0.08	Ccdc93	coiled-coil domain containing 93	17083	0.14
chr12_104153598_104153749	0.08	Serpina3c	serine (or cysteine) peptidase inhibitor, clade A, member 3C	197	0.89
chr17_12751352_12751573	0.07	Igf2r	insulin-like growth factor 2 receptor	662	0.61
chr6_89644800_89644964	0.07	Txnrd3	thioredoxin reductase 3	894	0.58
chr3_19987089_19987240	0.07	Cp	ceruloplasmin	381	0.85
chr5_135695656_135695889	0.07	Gm16061	predicted gene 16061	3247	0.14
chr4_33243933_33244238	0.07	Pnrc1	proline-rich nuclear receptor coactivator 1	3490	0.21
chr17_6106744_6106904	0.07	Tulp4	tubby like protein 4	34	0.96
chr10_31553345_31553496	0.07	Gm47693	predicted gene, 47693	4020	0.21
chr8_120533900_120534066	0.06	Gse1	genetic suppressor element 1, coiled-coil protein	1874	0.21
chr4_122455220_122455373	0.06	Gm12895	predicted gene 12895	86	0.98
chr4_122122855_122123016	0.06	Gm12896	predicted gene 12896	88	0.98
chr19_61052885_61053046	0.06	Gm22520	predicted gene, 22520	39420	0.13
chr3_95687775_95688070	0.06	Adamtsl4	ADAMTS-like 4	5	0.96
chr1_120083236_120083428	0.06	Tmem37	transmembrane protein 37	9258	0.18
chr6_28845646_28845808	0.05	Snd1	staphylococcal nuclease and tudor domain containing 1	3180	0.25
chr4_3682969_3683158	0.05	Lyn	LYN proto-oncogene, Src family tyrosine kinase	4933	0.18
chr17_36231281_36231449	0.05	Gm18604	predicted gene, 18604	1896	0.09
chr3_101918798_101918949	0.05	Slc22a15	solute carrier family 22 (organic anion/cation transporter), member 15	5506	0.25
chr2_167886467_167886618	0.05	Gm14319	predicted gene 14319	27957	0.14
chr13_45963217_45963398	0.05	Atxn1	ataxin 1	1650	0.33
chr8_25529060_25529214	0.05	Fgfr1	fibroblast growth factor receptor 1	2988	0.17
chr4_61830694_61830880	0.05	Mup5	major urinary protein 5	4446	0.15
chr9_21149629_21149877	0.05	Cdc37	cell division cycle 37	189	0.89
chr1_92474055_92474238	0.05	Ndufa10	NADH:ubiquinone oxidoreductase subunit A10	286	0.84
chr17_33932704_33933052	0.05	Rgl2	ral guanine nucleotide dissociation stimulator-like 2	747	0.27
chr11_67722605_67722756	0.05	Rcvrn	recoverin	27354	0.14
chr11_21550683_21550834	0.05	Mdh1	malate dehydrogenase 1, NAD (soluble)	8971	0.14
chr1_107638144_107638321	0.05	Serpinb8	serine (or cysteine) peptidase inhibitor, clade B, member 8	32352	0.17
chr11_120627879_120628086	0.05	Mafg	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	2166	0.09
chr6_113866107_113866258	0.05	Atp2b2	ATPase, Ca++ transporting, plasma membrane 2	25188	0.15
chr11_101370588_101371223	0.05	G6pc	glucose-6-phosphatase, catalytic	3344	0.08
chr2_158095379_158095534	0.05	2010009K17Rik	RIKEN cDNA 2010009K17 gene	3659	0.19
chr11_97659776_97659960	0.05	Gm24158	predicted gene, 24158	459	0.41
chr11_3266649_3266801	0.04	Drg1	developmentally regulated GTP binding protein 1	310	0.84
chr11_60074241_60074392	0.04	Pemt	phosphatidylethanolamine N-methyltransferase	27827	0.12
chr12_16734524_16734675	0.04	Greb1	gene regulated by estrogen in breast cancer protein	5529	0.19
chr14_66009383_66009534	0.04	Gulo	gulonolactone (L-) oxidase	251	0.91
chr13_52928944_52929562	0.04	Auh	AU RNA binding protein/enoyl-coenzyme A hydratase	205	0.95
chr1_155112239_155112390	0.04	Ier5	immediate early response 5	12678	0.14
chr17_31872001_31872152	0.04	Sik1	salt inducible kinase 1	16272	0.13
chr14_67631840_67632009	0.04	Gm47010	predicted gene, 47010	43132	0.12
chr7_143502466_143502878	0.04	Phlda2	pleckstrin homology like domain, family A, member 2	131	0.93
chr2_163301297_163301733	0.04	Tox2	TOX high mobility group box family member 2	18863	0.19
chr14_122105762_122105950	0.04	A330035P11Rik	RIKEN cDNA A330035P11 gene	1097	0.31
chr2_32420040_32420228	0.04	Slc25a25	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	316	0.79
chr2_25453352_25453548	0.04	Clic3	chloride intracellular channel 3	3388	0.09
chr11_43950012_43950201	0.04	Gm12153	predicted gene 12153	8983	0.26
chr6_121878379_121878709	0.04	Mug1	murinoglobulin 1	7033	0.2
chr11_78498755_78498922	0.04	Vtn	vitronectin	253	0.76
chr6_125352883_125353034	0.04	Tnfrsf1a	tumor necrosis factor receptor superfamily, member 1a	3235	0.16
chr13_80885021_80885448	0.04	1700023H06Rik	RIKEN cDNA 1700023H06 gene	290	0.8
chr3_88492692_88492952	0.04	Lmna	lamin A	490	0.6
chr14_31394009_31394182	0.04	Sh3bp5	SH3-domain binding protein 5 (BTK-associated)	13290	0.14
chr12_101075488_101075655	0.04	D130020L05Rik	RIKEN cDNA D130020L05 gene	6880	0.13
chr7_80077642_80077793	0.04	Gm21057	predicted gene, 21057	2450	0.18
chr11_18900383_18900558	0.03	2900018N21Rik	RIKEN cDNA 2900018N21 gene	10630	0.16
chr1_157283514_157283666	0.03	Rasal2	RAS protein activator like 2	26908	0.17
chr2_174021375_174021526	0.03	Vamp7-ps	vesicle-associated membrane protein 7, pseudogene	25823	0.15
chr11_4108452_4108659	0.03	Sec14l2	SEC14-like lipid binding 2	456	0.54
chr2_167753904_167754135	0.03	Gm14321	predicted gene 14321	23448	0.12
chr7_110853928_110854130	0.03	Lyve1	lymphatic vessel endothelial hyaluronan receptor 1	8924	0.15
chr7_30412740_30412933	0.03	Tyrobp	TYRO protein tyrosine kinase binding protein	924	0.3
chr12_103897314_103897939	0.03	B430119L08Rik	RIKEN cDNA B430119L08 gene	1729	0.21
chr9_46216986_46217137	0.03	Sik3	SIK family kinase 3	2510	0.15
chr9_108083457_108083608	0.03	Rnf123	ring finger protein 123	186	0.77
chr9_48595528_48595693	0.03	Nnmt	nicotinamide N-methyltransferase	1765	0.42
chr5_33726324_33726568	0.03	Fgfr3	fibroblast growth factor receptor 3	2674	0.15
chr1_93128050_93128201	0.03	Gm28086	predicted gene 28086	4022	0.15
chr9_120933701_120933852	0.03	Ctnnb1	catenin (cadherin associated protein), beta 1	42	0.95
chr5_122936823_122936974	0.03	Kdm2b	lysine (K)-specific demethylase 2B	11096	0.13
chr5_142920701_142920990	0.03	Actb	actin, beta	14091	0.14
chr5_110809507_110809658	0.03	Ulk1	unc-51 like kinase 1	471	0.7
chr1_13373035_13373207	0.03	Ncoa2	nuclear receptor coactivator 2	682	0.56
chr15_91049265_91049450	0.03	Kif21a	kinesin family member 21A	461	0.83
chr8_108584590_108585054	0.03	Lncbate1	brown adipose tissue enriched long non-coding RNA 1	227	0.95
chr15_81888131_81888282	0.03	Aco2	aconitase 2, mitochondrial	7100	0.09
chr19_3852307_3852467	0.03	Chka	choline kinase alpha	24	0.49
chr15_77160485_77160636	0.03	Rbfox2	RNA binding protein, fox-1 homolog (C. elegans) 2	6748	0.15
chr19_29252075_29252226	0.03	Jak2	Janus kinase 2	291	0.91
chr1_190126920_190127155	0.03	Gm28172	predicted gene 28172	41633	0.14
chr1_156073065_156073216	0.03	Tor1aip2	torsin A interacting protein 2	9927	0.17
chr11_101783694_101783858	0.03	Etv4	ets variant 4	612	0.68
chr14_30923762_30923926	0.03	Itih3	inter-alpha trypsin inhibitor, heavy chain 3	84	0.95
chr9_121906088_121906239	0.03	Ackr2	atypical chemokine receptor 2	1	0.95
chr19_46630947_46631098	0.03	Wbp1l	WW domain binding protein 1 like	7621	0.14
chr17_46455115_46455282	0.03	Gm5093	predicted gene 5093	15101	0.09
chr13_52771924_52772129	0.03	BB123696	expressed sequence BB123696	14821	0.27
chr14_60737068_60737230	0.03	Spata13	spermatogenesis associated 13	4243	0.23
chr13_109633045_109633234	0.03	Pde4d	phosphodiesterase 4D, cAMP specific	359	0.94
chr14_66129671_66129842	0.03	Ephx2	epoxide hydrolase 2, cytoplasmic	5256	0.17
chr5_36697435_36697602	0.03	D5Ertd579e	DNA segment, Chr 5, ERATO Doi 579, expressed	1494	0.31
chr17_26576750_26576907	0.03	Gm22420	predicted gene, 22420	4099	0.13
chr2_90941045_90941219	0.03	Celf1	CUGBP, Elav-like family member 1	589	0.61
chr10_96548942_96549289	0.03	Gm48505	predicted gene, 48505	25133	0.17
chr4_49459901_49460052	0.03	Acnat1	acyl-coenzyme A amino acid N-acyltransferase 1	8839	0.13
chr7_27163021_27163193	0.03	Egln2	egl-9 family hypoxia-inducible factor 2	2236	0.12
chr4_130787632_130787854	0.03	Gm12972	predicted gene 12972	1674	0.23
chr12_84221379_84221549	0.03	Elmsan1	ELM2 and Myb/SANT-like domain containing 1	2583	0.16
chr1_153900403_153900624	0.03	Glul	glutamate-ammonia ligase (glutamine synthetase)	72	0.72
chr5_124167184_124167456	0.03	Pitpnm2	phosphatidylinositol transfer protein, membrane-associated 2	17798	0.11
chr4_126173656_126173812	0.03	Thrap3	thyroid hormone receptor associated protein 3	207	0.89
chr6_89239871_89240105	0.03	Gm25961	predicted gene, 25961	9614	0.13
chr4_135406321_135406484	0.03	Gm12990	predicted gene 12990	2746	0.14
chr2_39014404_39014555	0.03	Golga1	golgi autoantigen, golgin subfamily a, 1	3927	0.11
chr13_48625877_48626046	0.03	Ptpdc1	protein tyrosine phosphatase domain containing 1	297	0.87
chr6_87810683_87810855	0.03	Rab43	RAB43, member RAS oncogene family	1010	0.28
chr15_81938386_81938558	0.03	Csdc2	cold shock domain containing C2, RNA binding	1490	0.21
chr8_46908369_46908545	0.03	1700011L03Rik	RIKEN cDNA 1700011L03 gene	40342	0.14
chr10_111597521_111597672	0.03	Gm30262	predicted gene, 30262	1581	0.33
chr14_70058075_70058262	0.03	Gm33524	predicted gene, 33524	801	0.6
chr4_137653092_137653286	0.03	Usp48	ubiquitin specific peptidase 48	2888	0.23
chr18_60736799_60737000	0.02	Ndst1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	3749	0.19
chr19_30157135_30157327	0.02	Rpl31-ps20	ribosomal protein L31, pseudogene 20	3389	0.24
chr11_101715500_101715663	0.02	Dhx8	DEAH (Asp-Glu-Ala-His) box polypeptide 8	17338	0.12
chr12_80437192_80437401	0.02	Dcaf5	DDB1 and CUL4 associated factor 5	695	0.54
chr11_57963469_57963736	0.02	Gm12249	predicted gene 12249	9532	0.16
chr16_32202814_32202973	0.02	Bex6	brain expressed family member 6	16707	0.11
chr7_145047841_145048023	0.02	Ccnd1	cyclin D1	108007	0.05
chr6_39782094_39782403	0.02	Mrps33	mitochondrial ribosomal protein S33	23794	0.15
chr14_122082959_122083124	0.02	Gm49236	predicted gene, 49236	8185	0.14
chr17_14201623_14201787	0.02	Gm34510	predicted gene, 34510	2023	0.27
chr5_123395676_123395864	0.02	Gm15747	predicted gene 15747	706	0.34
chr2_93459658_93459954	0.02	Cd82	CD82 antigen	2106	0.29
chr1_133278341_133278519	0.02	Plekha6	pleckstrin homology domain containing, family A member 6	4176	0.16
chr15_75909227_75909395	0.02	Eef1d	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	5	0.85
chr4_119226096_119226268	0.02	Gm12898	predicted gene 12898	3008	0.11
chr4_139683984_139684159	0.02	Tas1r2	taste receptor, type 1, member 2	30522	0.14
chr2_75704785_75705107	0.02	E030042O20Rik	RIKEN cDNA E030042O20 gene	176	0.65
chr9_78223304_78223524	0.02	Gsta1	glutathione S-transferase, alpha 1 (Ya)	7242	0.1
chr4_144895074_144895225	0.02	Dhrs3	dehydrogenase/reductase (SDR family) member 3	1930	0.37
chr17_14990062_14990517	0.02	9030025P20Rik	RIKEN cDNA 9030025P20 gene	10790	0.1
chr10_95716074_95716270	0.02	Gm47671	predicted gene, 47671	1335	0.29
chr15_100681158_100681447	0.02	Cela1	chymotrypsin-like elastase family, member 1	281	0.82
chr11_101668758_101669043	0.02	Arl4d	ADP-ribosylation factor-like 4D	3359	0.12
chr8_70716563_70716714	0.02	Gm3336	predicted gene 3336	1905	0.14
chr2_103867069_103867263	0.02	Gm13876	predicted gene 13876	21158	0.08
chr10_41491217_41491378	0.02	Ppil6	peptidylprolyl isomerase (cyclophilin)-like 6	820	0.36
chr1_67195986_67196354	0.02	Gm15668	predicted gene 15668	53030	0.13
chr5_113735843_113736024	0.02	Ficd	FIC domain containing	130	0.93
chr4_134186730_134186892	0.02	Cep85	centrosomal protein 85	170	0.89
chr12_99417868_99418197	0.02	Foxn3	forkhead box N3	5427	0.19
chr6_86209454_86209634	0.02	Tgfa	transforming growth factor alpha	2050	0.28
chr10_58233103_58233399	0.02	Duxf3	double homeobox family member 3	576	0.63
chr19_42518403_42518575	0.02	R3hcc1l	R3H domain and coiled-coil containing 1 like	270	0.92
chr3_69778568_69778734	0.02	Nmd3	NMD3 ribosome export adaptor	32219	0.16
chr13_75976970_75977121	0.02	Spata9	spermatogenesis associated 9	9298	0.12
chr5_122131727_122131989	0.02	Ccdc63	coiled-coil domain containing 63	145	0.94
chr19_48700604_48700763	0.02	Sorcs3	sortilin-related VPS10 domain containing receptor 3	3533	0.37
chr8_105207006_105207175	0.02	D230025D16Rik	RIKEN cDNA D230025D16 gene	18055	0.08
chr2_157556257_157556418	0.02	Blcap	bladder cancer associated protein	3670	0.14
chr13_93648931_93649116	0.02	Bhmt	betaine-homocysteine methyltransferase	11062	0.14
chr6_72233913_72234064	0.02	Atoh8	atonal bHLH transcription factor 8	549	0.74
chr1_74284201_74284570	0.02	Aamp	angio-associated migratory protein	36	0.87
chr13_8996579_8996771	0.02	Gtpbp4	GTP binding protein 4	592	0.58
chr11_79081331_79081482	0.02	Ksr1	kinase suppressor of ras 1	6920	0.23
chr2_167336792_167337118	0.02	B4galt5	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	12228	0.18
chr4_43415734_43415920	0.02	Rusc2	RUN and SH3 domain containing 2	611	0.6
chr11_116165413_116165564	0.02	Fbf1	Fas (TNFRSF6) binding factor 1	395	0.67
chr8_111625803_111625975	0.02	Ldhd	lactate dehydrogenase D	2698	0.22
chr4_45496371_45496660	0.02	Shb	src homology 2 domain-containing transforming protein B	3674	0.19
chr8_84706735_84707039	0.02	Nfix	nuclear factor I/X	829	0.42
chr17_24959424_24959602	0.02	Jpt2	Jupiter microtubule associated homolog 2	1123	0.35
chr17_5730727_5730878	0.02	3300005D01Rik	RIKEN cDNA 3300005D01 gene	67855	0.09
chr8_105304667_105304842	0.02	E2f4	E2F transcription factor 4	829	0.23
chr4_125122748_125123219	0.02	Zc3h12a	zinc finger CCCH type containing 12A	463	0.76
chr9_20898316_20898471	0.02	Eif3g	eukaryotic translation initiation factor 3, subunit G	189	0.85
chr6_138075559_138075718	0.02	Slc15a5	solute carrier family 15, member 5	2442	0.4
chr17_34591378_34591776	0.02	Pbx2	pre B cell leukemia homeobox 2	311	0.65
chr9_43232699_43232996	0.02	Oaf	out at first homolog	7064	0.15
chr10_63247362_63247596	0.02	Herc4	hect domain and RLD 4	1657	0.24
chr8_83895995_83896156	0.02	Adgrl1	adhesion G protein-coupled receptor L1	4030	0.14
chr17_56673508_56673661	0.02	Ranbp3	RAN binding protein 3	200	0.9
chr1_86441574_86441779	0.02	Tex44	testis expressed 44	15347	0.11
chr11_4115259_4115410	0.02	Sec14l2	SEC14-like lipid binding 2	3362	0.11
chr17_62883043_62883201	0.02	Efna5	ephrin A5	1805	0.52
chr12_3850885_3851080	0.02	Dnmt3a	DNA methyltransferase 3A	1347	0.41
chr10_80870759_80871034	0.02	Tmprss9	transmembrane protease, serine 9	952	0.32
chr13_41220287_41220454	0.02	Elovl2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	35	0.96
chr18_31951040_31951212	0.02	Gpr17	G protein-coupled receptor 17	1490	0.29
chr4_117124519_117125009	0.02	Btbd19	BTB (POZ) domain containing 19	402	0.61
chr7_28811272_28811515	0.02	Hnrnpl	heterogeneous nuclear ribonucleoprotein L	453	0.54
chr15_90679599_90679931	0.02	Cpne8	copine VIII	333	0.89
chr12_102284053_102284212	0.02	Rin3	Ras and Rab interactor 3	491	0.83
chr12_24680312_24680550	0.02	Cys1	cystin 1	288	0.87
chr6_91752698_91752849	0.02	Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	2589	0.22
chr3_60510914_60511240	0.02	Mbnl1	muscleblind like splicing factor 1	9799	0.23
chr18_84084397_84084569	0.02	Tshz1	teashirt zinc finger family member 1	592	0.69
chr13_93190090_93190414	0.02	Tent2	terminal nucleotidyltransferase 2	1859	0.36
chr19_53892382_53892590	0.02	Pdcd4	programmed cell death 4	250	0.9
chr1_179836734_179836979	0.02	Ahctf1	AT hook containing transcription factor 1	33176	0.15
chr2_93045265_93045449	0.02	Prdm11	PR domain containing 11	214	0.94
chr8_106149050_106149358	0.02	Pla2g15	phospholipase A2, group XV	1195	0.33
chr11_113632167_113632467	0.02	Sstr2	somatostatin receptor 2	8060	0.14