CREMA results: Msx1_Lhx9_Barx1_Rax

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Transcription factors associated with Msx1_Lhx9_Barx1_Rax_Dlx6

Gene Symbol	Gene ID	Gene Info
Msx1 Ensembl NCBI MGI UniProt	ENSMUSG00000048450.10	msh homeobox 1
Lhx9 Ensembl NCBI MGI UniProt	ENSMUSG00000019230.8	LIM homeobox protein 9
Barx1 Ensembl NCBI MGI UniProt	ENSMUSG00000021381.4	BarH-like homeobox 1
Rax Ensembl NCBI MGI UniProt	ENSMUSG00000024518.3	retina and anterior neural fold homeobox
Dlx6 Ensembl NCBI MGI UniProt	ENSMUSG00000029754.7	distal-less homeobox 6

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

CRE	Gene	Distance	Association probability	Pearson corr. coef.	P-value	Plot
chr13_48659009_48659160	Barx1	3914	0.205127	0.44	3.8e-01	Click!
chr13_48653912_48654075	Barx1	9005	0.165057	0.37	4.7e-01	Click!
chr13_48655742_48655905	Barx1	7175	0.172819	-0.24	6.5e-01	Click!
chr1_138831356_138831675	Lhx9	2144	0.261649	0.83	4.1e-02	Click!
chr1_138826941_138827260	Lhx9	6559	0.168684	0.10	8.5e-01	Click!
chr1_138835461_138835621	Lhx9	1882	0.281997	0.04	9.4e-01	Click!
chr5_37823370_37823527	Msx1	1134	0.515557	0.66	1.6e-01	Click!
chr5_37818319_37818501	Msx1	6172	0.207235	0.62	1.9e-01	Click!
chr5_37824534_37824701	Msx1	34	0.978696	0.44	3.9e-01	Click!
chr5_37849248_37849752	Msx1	24917	0.168881	0.39	4.5e-01	Click!
chr5_37848731_37849060	Msx1	24312	0.170261	0.25	6.3e-01	Click!

Activity of the Msx1_Lhx9_Barx1_Rax_Dlx6 motif across conditions

Conditions sorted by the z-value of the Msx1_Lhx9_Barx1_Rax_Dlx6 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE)	Target Score	Top associated gene	Gene Info	Distance of CRE to TSS	CRE/Gene association probability
chr10_59786230_59786381	0.01	Gm17059	predicted gene 17059	13949	0.14
chr8_122697244_122697412	0.01	Gm10612	predicted gene 10612	532	0.59
chr7_143068403_143068570	0.00	Tssc4	tumor-suppressing subchromosomal transferable fragment 4	763	0.46
chr4_33248900_33249090	0.00	Pnrc1	proline-rich nuclear receptor coactivator 1	485	0.78
chr1_165766009_165766175	0.00	Creg1	cellular repressor of E1A-stimulated genes 1	2346	0.15
chr6_94273521_94273693	0.00	Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	9418	0.24
chr1_23146038_23146850	0.00	Ppp1r14bl	protein phosphatase 1, regulatory inhibitor subunit 14B like	44191	0.14
chr2_115888561_115888772	0.00	Meis2	Meis homeobox 2	15704	0.28
chr13_114348449_114348600	0.00	Ndufs4	NADH:ubiquinone oxidoreductase core subunit S4	39525	0.14
chr5_137981657_137981816	0.00	Azgp1	alpha-2-glycoprotein 1, zinc	168	0.89
chr15_102999275_102999447	0.00	Hoxc6	homeobox C6	1104	0.28
chr2_153584454_153584637	0.00	Commd7	COMM domain containing 7	48186	0.1
chr15_10685820_10685975	0.00	Rai14	retinoic acid induced 14	27643	0.16
chr14_70530138_70530323	0.00	Lgi3	leucine-rich repeat LGI family, member 3	455	0.68
chr12_7987781_7988288	0.00	Apob	apolipoprotein B	10255	0.22
chr11_76908664_76908965	0.00	Tmigd1	transmembrane and immunoglobulin domain containing 1	4252	0.2
chr5_117089265_117089549	0.00	Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	9404	0.15
chr8_70528786_70528992	0.00	Fkbp8	FK506 binding protein 8	73	0.91
chr15_25623849_25624065	0.00	Myo10	myosin X	1408	0.41
chr3_127005234_127005396	0.00	Gm25501	predicted gene, 25501	54	0.96
chr18_84858118_84858492	0.00	Gm16146	predicted gene 16146	1242	0.4
chr3_132835072_132835238	0.00	Gm9403	predicted gene 9403	7241	0.15
chr4_123652088_123652262	0.00	Macf1	microtubule-actin crosslinking factor 1	12577	0.13
chr6_120579907_120580085	0.00	Gm44124	predicted gene, 44124	180	0.92
chr19_55855694_55855845	0.00	Ppnr	per-pentamer repeat gene	14097	0.24
chr11_107337882_107338046	0.00	Gm11716	predicted gene 11716	86	0.79
chr11_120819707_120820136	0.00	Fasn	fatty acid synthase	3859	0.11
chr7_101896586_101896755	0.00	Anapc15	anaphase promoting complex C subunit 15	193	0.86
chr4_59292456_59292607	0.00	Susd1	sushi domain containing 1	23435	0.17
chr5_89416345_89416742	0.00	Gc	vitamin D binding protein	19085	0.24
chr17_27907441_27908078	0.00	Taf11	TATA-box binding protein associated factor 11	24	0.5
chr14_20245752_20245947	0.00	Gm2048	predicted gene 2048	15083	0.11