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ENCSR904DTN: DNase-seq of mouse liver in constant darkness

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CREMA is a free online tool that recognizes most important transcription factors that change the chromatin state across different samples.

Results for Msx1_Lhx9_Barx1_Rax_Dlx6

Z-value: 0.05

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Transcription factors associated with Msx1_Lhx9_Barx1_Rax_Dlx6

Gene Symbol	Gene ID	Gene Info
Msx1 Ensembl NCBI MGI UniProt	ENSMUSG00000048450.10	Msx1
Lhx9 Ensembl NCBI MGI UniProt	ENSMUSG00000019230.8	Lhx9
Barx1 Ensembl NCBI MGI UniProt	ENSMUSG00000021381.4	Barx1
Rax Ensembl NCBI MGI UniProt	ENSMUSG00000024518.3	Rax
Dlx6 Ensembl NCBI MGI UniProt	ENSMUSG00000029754.7	Dlx6

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

Gene	Promoter	Distance	Association probability	Pearson corr. coef.	P-value	Plot
Barx1	chr13_48659009_48659160	3914	0.205127	0.44	3.8e-01	Click!
Barx1	chr13_48653912_48654075	9005	0.165057	0.37	4.7e-01	Click!
Barx1	chr13_48655742_48655905	7175	0.172819	-0.24	6.5e-01	Click!
Lhx9	chr1_138831356_138831675	2144	0.261649	0.83	4.1e-02	Click!
Lhx9	chr1_138826941_138827260	6559	0.168684	0.10	8.5e-01	Click!
Lhx9	chr1_138835461_138835621	1882	0.281997	0.04	9.4e-01	Click!
Msx1	chr5_37823370_37823527	1134	0.515557	0.66	1.6e-01	Click!
Msx1	chr5_37818319_37818501	6172	0.207235	0.62	1.9e-01	Click!
Msx1	chr5_37824534_37824701	34	0.978696	0.44	3.9e-01	Click!
Msx1	chr5_37849248_37849752	24917	0.168881	0.39	4.5e-01	Click!
Msx1	chr5_37848731_37849060	24312	0.170261	0.25	6.3e-01	Click!

Activity of the Msx1_Lhx9_Barx1_Rax_Dlx6 motif across conditions

Conditions sorted by the z-value of the Msx1_Lhx9_Barx1_Rax_Dlx6 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE)	Target Score	Top associated gene	Gene Info	Distance of CRE to TSS	CRE/Gene association probability
chr10_59786230_59786381	0.01	Gm17059	predicted gene 17059	13949	0.14
chr8_122697244_122697412	0.01	Gm10612	predicted gene 10612	532	0.59
chr7_143068403_143068570	0.00	Tssc4	tumor-suppressing subchromosomal transferable fragment 4	763	0.46
chr4_33248900_33249090	0.00	Pnrc1	proline-rich nuclear receptor coactivator 1	485	0.78
chr1_165766009_165766175	0.00	Creg1	cellular repressor of E1A-stimulated genes 1	2346	0.15
chr6_94273521_94273693	0.00	Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	9418	0.24
chr1_23146038_23146850	0.00	Ppp1r14bl	protein phosphatase 1, regulatory inhibitor subunit 14B like	44191	0.14
chr2_115888561_115888772	0.00	Meis2	Meis homeobox 2	15704	0.28
chr13_114348449_114348600	0.00	Ndufs4	NADH:ubiquinone oxidoreductase core subunit S4	39525	0.14
chr5_137981657_137981816	0.00	Azgp1	alpha-2-glycoprotein 1, zinc	168	0.89
chr15_102999275_102999447	0.00	Hoxc6	homeobox C6	1104	0.28
chr2_153584454_153584637	0.00	Commd7	COMM domain containing 7	48186	0.1
chr15_10685820_10685975	0.00	Rai14	retinoic acid induced 14	27643	0.16
chr14_70530138_70530323	0.00	Lgi3	leucine-rich repeat LGI family, member 3	455	0.68
chr12_7987781_7988288	0.00	Apob	apolipoprotein B	10255	0.22
chr11_76908664_76908965	0.00	Tmigd1	transmembrane and immunoglobulin domain containing 1	4252	0.2
chr5_117089265_117089549	0.00	Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	9404	0.15
chr8_70528786_70528992	0.00	Fkbp8	FK506 binding protein 8	73	0.91
chr15_25623849_25624065	0.00	Myo10	myosin X	1408	0.41
chr3_127005234_127005396	0.00	Gm25501	predicted gene, 25501	54	0.96
chr18_84858118_84858492	0.00	Gm16146	predicted gene 16146	1242	0.4
chr3_132835072_132835238	0.00	Gm9403	predicted gene 9403	7241	0.15
chr4_123652088_123652262	0.00	Macf1	microtubule-actin crosslinking factor 1	12577	0.13
chr6_120579907_120580085	0.00	Gm44124	predicted gene, 44124	180	0.92
chr19_55855694_55855845	0.00	Ppnr	per-pentamer repeat gene	14097	0.24
chr11_107337882_107338046	0.00	Gm11716	predicted gene 11716	86	0.79
chr11_120819707_120820136	0.00	Fasn	fatty acid synthase	3859	0.11
chr7_101896586_101896755	0.00	Anapc15	anaphase promoting complex C subunit 15	193	0.86
chr4_59292456_59292607	0.00	Susd1	sushi domain containing 1	23435	0.17
chr5_89416345_89416742	0.00	Gc	vitamin D binding protein	19085	0.24
chr17_27907441_27908078	0.00	Taf11	TATA-box binding protein associated factor 11	24	0.5
chr14_20245752_20245947	0.00	Gm2048	predicted gene 2048	15083	0.11