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ENCSR904DTN: DNase-seq of mouse liver in constant darkness
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CREMA is a free online tool that recognizes most important transcription factors that change the chromatin state across different samples.

Results for Zfp410

Z-value: 0.93

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Transcription factors associated with Zfp410

Gene Symbol Gene ID Gene Info
Zfp410
ENSMUSG00000042472.10 Zfp410

Correlations of motif activity and signal intensity at CREs associated with the motif's TFs:

This plot shows correlation between observed signal intensity of a CRE associated with the transcription factor across all samples and activity of the motif.

For each TF, only the top 5 correlated CREs are shown.

GenePromoterDistanceAssociation probabilityPearson corr. coef.P-valuePlot
Zfp410chr12_84317174_843174181510.583941-0.911.1e-02Click!
Zfp410chr12_84316457_843166433020.637650-0.882.0e-02Click!
Zfp410chr12_84317443_843176023770.499922-0.853.4e-02Click!
Zfp410chr12_84316137_843163516080.465766-0.721.1e-01Click!
Zfp410chr12_84319868_8432002828030.154894-0.572.3e-01Click!

Activity of the Zfp410 motif across conditions

Conditions sorted by the z-value of the Zfp410 motif activity

Move your cursor over a bar to see sample name and corresponding Z-value.

Top target CREs of the motif:

Cis Regulatory Element (CRE) Target Score Top associated gene Gene Info Distance of CRE to TSS CRE/Gene association probability
chr6_125088989_125089157 1.48 2010008C14Rik
 RIKEN cDNA 2010008C14 gene
 5636
 0.07
chr6_125089845_125090127 1.32 Chd4
 chromodomain helicase DNA binding protein 4
 5995
 0.07
chr3_31394556_31394733 0.85 Gm38025
 predicted gene, 38025
 53632
 0.14
chr10_78308725_78308893 0.80 AC160405.1
1190
 0.23
chr14_102952108_102952260 0.76 Kctd12
 potassium channel tetramerisation domain containing 12
 29367
 0.14
chr15_56280670_56280835 0.71 Hba-ps3
 hemoglobin alpha, pseudogene 3
 108363
 0.07
chr13_57920068_57920230 0.67 Spock1
 sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
 11817
 0.26
chr16_37603232_37603383 0.64 Gm46559
 predicted gene, 46559
 7117
 0.16
chr4_133015360_133015511 0.53 Ahdc1
 AT hook, DNA binding motif, containing 1
 3231
 0.23
chr16_43298296_43298498 0.52 Gm37946
 predicted gene, 37946
 9884
 0.19
chr15_102103951_102104121 0.51 Tns2
 tensin 2
 389
 0.76
chr10_41545509_41545660 0.50 Ccdc162
 coiled-coil domain containing 162
 7265
 0.12
chr15_100674641_100674912 0.47 Cela1
 chymotrypsin-like elastase family, member 1
 4086
 0.11
chr5_146101972_146102158 0.39 Cyp3a59
 cytochrome P450, family 3, subfamily a, polypeptide 59
 22798
 0.12
chr4_118123096_118123255 0.36 St3gal3
 ST3 beta-galactoside alpha-2,3-sialyltransferase 3
 11707
 0.16
chr12_3764256_3764408 0.35 Dtnbos
 dystrobrevin, beta, opposite strand
 2186
 0.28
chr14_34762111_34762276 0.34 A930038B10Rik
 RIKEN cDNA A930038B10 gene
 1966
 0.27
chr11_20381578_20381759 0.34 Gm12033
 predicted gene 12033
 45655
 0.12
chr14_26441433_26441601 0.30 Slmap
 sarcolemma associated protein
 1138
 0.45
chr4_60152840_60153361 0.30 Mup2
 major urinary protein 2
 1189
 0.41
chr8_126588974_126589213 0.29 Irf2bp2
 interferon regulatory factor 2 binding protein 2
 4893
 0.25
chr7_127912019_127912170 0.29 Kat8
 K(lysine) acetyltransferase 8
 422
 0.6
chr19_10667308_10667470 0.28 Pga5
 pepsinogen 5, group I
 3584
 0.12
chr16_4355769_4355950 0.28 Gm6142
 predicted pseudogene 6142
 35179
 0.15
chr4_121009286_121009437 0.28 Smap2
 small ArfGAP 2
 7886
 0.13
chr11_97180790_97180941 0.27 Kpnb1
 karyopherin (importin) beta 1
 7016
 0.11
chr1_85277288_85277439 0.27 Gm16026
 predicted pseudogene 16026
 2256
 0.2
chr2_6646229_6646380 0.26 Celf2
 CUGBP, Elav-like family member 2
 30124
 0.23
chr8_10948313_10948490 0.25 Gm44955
 predicted gene 44955
 511
 0.66
chr19_41339786_41339959 0.25 Pik3ap1
 phosphoinositide-3-kinase adaptor protein 1
 45224
 0.15
chr11_86960654_86960847 0.23 Ypel2
 yippee like 2
 11274
 0.19
chr9_31383704_31383866 0.23 Nfrkb
 nuclear factor related to kappa B binding protein
 2407
 0.27
chr11_90357443_90357732 0.22 Hlf
 hepatic leukemia factor
 24348
 0.22
chr8_77132343_77132494 0.22 Nr3c2
 nuclear receptor subfamily 3, group C, member 2
 4405
 0.24
chr2_27768705_27768856 0.22 Rxra
 retinoid X receptor alpha
 28579
 0.21
chr8_127157192_127157370 0.21 Pard3
 par-3 family cell polarity regulator
 14123
 0.26
chr4_82384079_82384233 0.20 n-R5s188
 nuclear encoded rRNA 5S 188
 55254
 0.15
chr18_45574385_45574545 0.20 Kcnn2
 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
 155
 0.97
chr12_76580294_76580728 0.19 Sptb
 spectrin beta, erythrocytic
 3575
 0.19
chr15_42892738_42892909 0.19 Angpt1
 angiopoietin 1
 215846
 0.02
chr5_145987383_145987573 0.18 Cyp3a25
 cytochrome P450, family 3, subfamily a, polypeptide 25
 4165
 0.15
chr6_125095352_125095503 0.17 Chd4
 chromodomain helicase DNA binding protein 4
 554
 0.49
chr6_125095984_125096158 0.17 Chd4
 chromodomain helicase DNA binding protein 4
 90
 0.89
chr4_108849580_108849741 0.17 Kti12
 KTI12 homolog, chromatin associated
 1875
 0.25
chr18_42089247_42089538 0.16 Sh3rf2
 SH3 domain containing ring finger 2
 35682
 0.15
chr14_52196982_52197135 0.16 Supt16
 SPT16, facilitates chromatin remodeling subunit
 358
 0.5
chr11_53413647_53413813 0.15 Aff4
 AF4/FMR2 family, member 4
 3036
 0.11
chr3_135327376_135327667 0.15 Slc9b2
 solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2
 2785
 0.21
chr9_78013799_78014144 0.15 Gm23609
 predicted gene, 23609
 127
 0.91
chr7_80018509_80018811 0.15 Zfp710
 zinc finger protein 710
 6154
 0.13
chr19_56378910_56379366 0.14 Nrap
 nebulin-related anchoring protein
 727
 0.64
chr14_20158546_20158697 0.14 Kcnk5
 potassium channel, subfamily K, member 5
 13327
 0.14
chr18_12215421_12215611 0.13 Npc1
 NPC intracellular cholesterol transporter 1
 2962
 0.2
chr9_53301585_53301810 0.13 Exph5
 exophilin 5
 27
 0.98
chr12_102740400_102740552 0.12 Moap1
 modulator of apoptosis 1
 3169
 0.1
chr8_105466908_105467087 0.12 Tppp3
 tubulin polymerization-promoting protein family member 3
 1665
 0.22
chr4_60503881_60504482 0.11 Gm13773
 predicted gene 13773
 1340
 0.3
chr14_68830195_68830556 0.11 Gm47256
 predicted gene, 47256
 44460
 0.17
chr2_132247247_132247485 0.11 Tmem230
 transmembrane protein 230
 288
 0.86
chr4_142166276_142166451 0.10 Kazn
 kazrin, periplakin interacting protein
 7309
 0.19
chr6_67138304_67138472 0.10 A430010J10Rik
 RIKEN cDNA A430010J10 gene
 22711
 0.14
chr7_35131018_35131347 0.10 Gm35665
 predicted gene, 35665
 10267
 0.1
chr11_3134387_3135116 0.10 Sfi1
 Sfi1 homolog, spindle assembly associated (yeast)
 1256
 0.35
chr14_64949895_64950076 0.09 Ints9
 integrator complex subunit 9
 60
 0.57
chr3_60529673_60530018 0.09 Mbnl1
 muscleblind like splicing factor 1
 214
 0.95
chr3_108714394_108714793 0.09 Gpsm2
 G-protein signalling modulator 2 (AGS3-like, C. elegans)
 2923
 0.18
chr10_68218812_68220021 0.09 Arid5b
 AT rich interactive domain 5B (MRF1-like)
 59305
 0.13
chr6_124448524_124448700 0.09 Clstn3
 calsyntenin 3
 1560
 0.24
chr4_133701080_133701264 0.08 Mir7227
 microRNA 7227
 15936
 0.12
chrX_60014574_60014973 0.08 F9
 coagulation factor IX
 15309
 0.19
chr18_20936854_20937178 0.08 Rnf125
 ring finger protein 125
 7609
 0.22
chr9_104391823_104391974 0.07 Gm28548
 predicted gene 28548
 30066
 0.14
chr6_125087229_125087503 0.06 2010008C14Rik
 RIKEN cDNA 2010008C14 gene
 3929
 0.08
chr9_108344819_108344984 0.06 Usp4
 ubiquitin specific peptidase 4 (proto-oncogene)
 2952
 0.1
chr14_70317262_70317413 0.06 Slc39a14
 solute carrier family 39 (zinc transporter), member 14
 3412
 0.15
chr19_55258606_55258757 0.06 Acsl5
 acyl-CoA synthetase long-chain family member 5
 5312
 0.19
chr7_104507554_104507721 0.06 Trim30d
 tripartite motif-containing 30D
 188
 0.88
chr2_31733558_31733887 0.06 Abl1
 c-abl oncogene 1, non-receptor tyrosine kinase
 26221
 0.12
chr7_67228989_67229173 0.06 Lysmd4
 LysM, putative peptidoglycan-binding, domain containing 4
 5472
 0.17
chr1_105718739_105718916 0.06 Gm37566
 predicted gene, 37566
 10254
 0.16
chrX_60404794_60404961 0.05 Atp11c
 ATPase, class VI, type 11C
 896
 0.6
chr2_9014159_9014316 0.05 Gm13217
 predicted gene 13217
 28247
 0.25
chr16_21788095_21788271 0.05 Ehhadh
 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
 376
 0.79
chr12_3892588_3892788 0.05 Dnmt3a
 DNA methyltransferase 3A
 944
 0.53
chr15_81427541_81427723 0.05 Gm17025
 predicted gene 17025
 8444
 0.12
chr15_54943868_54944200 0.04 Gm26684
 predicted gene, 26684
 8036
 0.17
chr12_79969392_79969913 0.04 Gm8275
 predicted gene 8275
 10199
 0.18
chr13_56630053_56630394 0.04 Tgfbi
 transforming growth factor, beta induced
 990
 0.57
chr11_70835202_70835548 0.04 Rabep1
 rabaptin, RAB GTPase binding effector protein 1
 9403
 0.11
chrX_70475319_70475500 0.04 Tmem185a
 transmembrane protein 185A
 1733
 0.2
chr14_25716292_25716457 0.04 Zcchc24
 zinc finger, CCHC domain containing 24
 3418
 0.17
chr1_31094891_31095067 0.04 4931428L18Rik
 RIKEN cDNA 4931428L18 gene
 1475
 0.35
chr2_29030024_29030239 0.03 Cfap77
 cilia and flagella associated protein 77
 9229
 0.17
chr8_126776388_126776581 0.03 Gm45805
 predicted gene 45805
 18150
 0.22
chrX_135205150_135205310 0.03 Tceal6
 transcription elongation factor A (SII)-like 6
 5457
 0.14
chr14_17733474_17733665 0.03 Gm48320
 predicted gene, 48320
 37553
 0.2
chr4_106827627_106828287 0.03 Gm12746
 predicted gene 12746
 19963
 0.15
chr4_61696485_61696867 0.03 Mup-ps15
 major urinary protein, pseudogene 15
 2165
 0.27
chr11_86382860_86383034 0.03 Med13
 mediator complex subunit 13
 25345
 0.15
chr17_36030191_36030370 0.02 H2-T23
 histocompatibility 2, T region locus 23
 2261
 0.1
chr19_3831749_3831913 0.02 Gm19209
 predicted gene, 19209
 9442
 0.1
chr9_73044177_73044334 0.02 Rab27a
 RAB27A, member RAS oncogene family
 599
 0.52
chr2_28583373_28583589 0.02 Gtf3c5
 general transcription factor IIIC, polypeptide 5
 202
 0.88
chr5_130184977_130185128 0.02 Rabgef1
 RAB guanine nucleotide exchange factor (GEF) 1
 2109
 0.18
chr16_23334291_23334455 0.02 St6gal1
 beta galactoside alpha 2,6 sialyltransferase 1
 43903
 0.12
chr16_34083289_34083602 0.01 Kalrn
 kalirin, RhoGEF kinase
 12542
 0.25
chr17_26497684_26497862 0.01 Gm34455
 predicted gene, 34455
 5427
 0.12
chr16_44392333_44392522 0.01 Cfap44
 cilia and flagella associated protein 44
 2369
 0.31
chr4_129331693_129331844 0.01 Rbbp4
 retinoblastoma binding protein 4, chromatin remodeling factor
 2876
 0.16
chr2_52577576_52577747 0.01 Cacnb4
 calcium channel, voltage-dependent, beta 4 subunit
 19094
 0.18
chr2_6128253_6128433 0.01 Proser2
 proline and serine rich 2
 1796
 0.28
chr12_64968165_64968316 0.01 Togaram1
 TOG array regulator of axonemal microtubules 1
 2184
 0.21
chr13_49179527_49179727 0.01 Ninj1
 ninjurin 1
 7858
 0.18
chr14_21741929_21742087 0.01 Gm15935
 predicted gene 15935
 419
 0.5
chr17_4611843_4612060 0.01 4930517M08Rik
 RIKEN cDNA 4930517M08 gene
 23027
 0.24
chr17_5592858_5593167 0.01 Zdhhc14
 zinc finger, DHHC domain containing 14
 100455
 0.06
chr13_104706600_104706768 0.01 2610204G07Rik
 RIKEN cDNA 2610204G07 gene
 21753
 0.23
chr2_27684119_27684319 0.00 Rxra
 retinoid X receptor alpha
 6957
 0.27
chr2_147904893_147905044 0.00 Gm25516
 predicted gene, 25516
 30090
 0.2
chr4_60754481_60754836 0.00 Mup-ps8
 major urinary protein, pseudogene 8
 2154
 0.29
chr18_42467835_42467998 0.00 Gm3631
 predicted gene 3631
 19172
 0.16
chr9_9114117_9114295 0.00 Gm16833
 predicted gene, 16833
 122082
 0.06
chr8_37423159_37423310 0.00 Gm45654
 predicted gene 45654
 22214
 0.2

Histogram of CRE-TSS distances for CREs targeted by :

Histogram of

Rank distribution of CRE target scores:

Histogram of target CRE score.

Distribution of target CREs across different genomic regions:

Weighted Piechart of Weighted Piechart of Weighted Piechart of

Network of associatons between targets according to the STRING database.

StringDB image

First level regulatory network of Zfp410

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0071985 multivesicular body sorting pathway(GO:0071985)
0.0 0.4 GO:0014850 response to muscle activity(GO:0014850)
0.0 0.3 GO:0043981 histone H4-K5 acetylation(GO:0043981) histone H4-K8 acetylation(GO:0043982)
0.0 0.1 GO:0006572 tyrosine catabolic process(GO:0006572)
0.0 0.1 GO:0046499 S-adenosylmethioninamine metabolic process(GO:0046499)
0.0 0.1 GO:0003383 apical constriction(GO:0003383)
0.0 0.1 GO:0051541 elastin metabolic process(GO:0051541)
0.0 0.2 GO:0032793 positive regulation of CREB transcription factor activity(GO:0032793)
0.0 0.0 GO:0060528 secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development(GO:0060528)
0.0 0.1 GO:0010032 meiotic chromosome condensation(GO:0010032)
0.0 0.0 GO:0034136 negative regulation of toll-like receptor 2 signaling pathway(GO:0034136)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0072487 MSL complex(GO:0072487)
0.0 0.1 GO:0005927 muscle tendon junction(GO:0005927)
0.0 0.1 GO:0097452 GAIT complex(GO:0097452)
0.0 0.1 GO:0033269 internode region of axon(GO:0033269)
0.0 0.2 GO:0033268 node of Ranvier(GO:0033268)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0016286 small conductance calcium-activated potassium channel activity(GO:0016286)
0.0 0.1 GO:0001069 regulatory region RNA binding(GO:0001069)
0.0 0.2 GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841)
0.0 0.1 GO:0043891 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891)
0.0 0.2 GO:0046972 histone acetyltransferase activity (H4-K5 specific)(GO:0043995) histone acetyltransferase activity (H4-K8 specific)(GO:0043996) histone acetyltransferase activity (H4-K16 specific)(GO:0046972)
0.0 0.1 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886) DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates(GO:0051718)
0.0 0.1 GO:0008390 testosterone 16-alpha-hydroxylase activity(GO:0008390)
0.0 0.1 GO:0034988 Fc-gamma receptor I complex binding(GO:0034988)
0.0 0.4 GO:0019178 phosphohistidine phosphatase activity(GO:0008969) inositol-1,3,4-trisphosphate 4-phosphatase activity(GO:0017161) NADP phosphatase activity(GO:0019178) 5-amino-6-(5-phosphoribitylamino)uracil phosphatase activity(GO:0043726) phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity(GO:0043813) inositol-1,3,4,5,6-pentakisphosphate 1-phosphatase activity(GO:0052825) inositol-3,4-bisphosphate 4-phosphatase activity(GO:0052828) inositol-1,3,4-trisphosphate 1-phosphatase activity(GO:0052829) inositol-1,3,4,6-tetrakisphosphate 6-phosphatase activity(GO:0052830) inositol-1,3,4,6-tetrakisphosphate 1-phosphatase activity(GO:0052831) phosphatidylinositol-1,4,5-trisphosphate 5-phosphatase activity(GO:0052867) IDP phosphatase activity(GO:1990003)
0.0 0.0 GO:0004886 9-cis retinoic acid receptor activity(GO:0004886) vitamin D response element binding(GO:0070644)
0.0 0.2 GO:0008191 metalloendopeptidase inhibitor activity(GO:0008191)
0.0 0.1 GO:0051371 muscle alpha-actinin binding(GO:0051371)