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ENCODE: ATAC-seq of different tissues during embryonic development
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CREMA identifies cis-regulatory elements genome-wide and models their activities across samples in terms of predicted transcription factor binding sites within them.

Regulatory motifs sorted by significance (z-value)

Motif name Z-value Associated genes Profile Logo
Tal1 43.90 small profile SeqLogo of Tal1
Rfx3_Rfx1_Rfx4 31.11 small profile SeqLogo of Rfx3_Rfx1_Rfx4
Hnf4a 24.18 small profile SeqLogo of Hnf4a
Hnf1b 23.65 small profile SeqLogo of Hnf1b
Nfia 19.84 small profile SeqLogo of Nfia
Nfic_Nfib 17.41 small profile SeqLogo of Nfic_Nfib
Zbtb18 16.76 small profile SeqLogo of Zbtb18
Rfx2_Rfx7 15.46 small profile SeqLogo of Rfx2_Rfx7
Gata4 15.42 small profile SeqLogo of Gata4
Tead3_Tead4 15.15 small profile SeqLogo of Tead3_Tead4
Mef2b 14.50 small profile SeqLogo of Mef2b
Gata5 14.25 small profile SeqLogo of Gata5
Klf4_Sp3 13.37 small profile SeqLogo of Klf4_Sp3
Hic2 13.22 small profile SeqLogo of Hic2
Gfi1_Gfi1b 12.92 small profile SeqLogo of Gfi1_Gfi1b
Neurod1 12.62 small profile SeqLogo of Neurod1
Rad21_Smc3 12.22 small profile SeqLogo of Rad21_Smc3
Hbp1 12.19 small profile SeqLogo of Hbp1
Grhl1 12.08 small profile SeqLogo of Grhl1
Snai1_Zeb1_Snai2 11.94 small profile SeqLogo of Snai1_Zeb1_Snai2
Esr2 11.51 small profile SeqLogo of Esr2
Elf1_Elf2_Etv2_Elf4 11.43 small profile SeqLogo of Elf1_Elf2_Etv2_Elf4
Ybx1_Nfya_Nfyb_Nfyc_Cebpz 11.07 small profile SeqLogo of Ybx1_Nfya_Nfyb_Nfyc_Cebpz
Pax6 10.96 small profile SeqLogo of Pax6
Runx2_Bcl11a 10.84 small profile SeqLogo of Runx2_Bcl11a
Pou2f3 10.83 small profile SeqLogo of Pou2f3
Tgif1_Meis3 10.40 small profile SeqLogo of Tgif1_Meis3
Sox14 10.11 small profile SeqLogo of Sox14
Isl1 10.05 small profile SeqLogo of Isl1
Gata3 9.89 small profile SeqLogo of Gata3
Zfx_Zfp711 9.60 small profile SeqLogo of Zfx_Zfp711
Hnf4g 9.33 small profile SeqLogo of Hnf4g
Cebpb 9.25 small profile SeqLogo of Cebpb
Pparg_Rxrg 9.16 small profile SeqLogo of Pparg_Rxrg
Nfe2_Bach1_Mafk 8.95 small profile SeqLogo of Nfe2_Bach1_Mafk
Hcfc1_Six5_Smarcc2_Zfp143 8.95 small profile SeqLogo of Hcfc1_Six5_Smarcc2_Zfp143
Yy1_Yy2 8.93 small profile SeqLogo of Yy1_Yy2
Hnf1a 8.89 small profile SeqLogo of Hnf1a
Foxj3_Tbl1xr1 8.60 small profile SeqLogo of Foxj3_Tbl1xr1
Pou4f1_Pou6f1 8.56 small profile SeqLogo of Pou4f1_Pou6f1
Wrnip1_Mta3_Rcor1 8.54 small profile SeqLogo of Wrnip1_Mta3_Rcor1
Spi1 8.53 small profile SeqLogo of Spi1
Hoxa5 8.43 small profile SeqLogo of Hoxa5
Maz_Zfp281 8.34 small profile SeqLogo of Maz_Zfp281
Srf 8.18 small profile SeqLogo of Srf
Gcm2 7.97 small profile SeqLogo of Gcm2
Ahr 7.86 small profile SeqLogo of Ahr
Nrf1 7.85 small profile SeqLogo of Nrf1
Nhlh1 7.75 small profile SeqLogo of Nhlh1
Elf5 7.62 small profile SeqLogo of Elf5
Nfatc2 7.49 small profile SeqLogo of Nfatc2
Foxa2_Foxa1 7.48 small profile SeqLogo of Foxa2_Foxa1
Hoxc9 7.40 small profile SeqLogo of Hoxc9
Plag1 7.35 small profile SeqLogo of Plag1
Pou3f4 7.27 small profile SeqLogo of Pou3f4
Sox8 7.05 small profile SeqLogo of Sox8
Msx2_Hoxd4 7.04 small profile SeqLogo of Msx2_Hoxd4
Hoxa2 6.95 small profile SeqLogo of Hoxa2
Onecut1_Cux2 6.94 small profile SeqLogo of Onecut1_Cux2
Hmga1 6.83 small profile SeqLogo of Hmga1
Mecp2 6.75 small profile SeqLogo of Mecp2
Foxi1_Foxo1 6.71 small profile SeqLogo of Foxi1_Foxo1
Smad1 6.53 small profile SeqLogo of Smad1
Etv1_Etv5_Gabpa 6.47 small profile SeqLogo of Etv1_Etv5_Gabpa
Hoxb13 6.42 small profile SeqLogo of Hoxb13
Vsx1_Uncx_Prrx2_Shox2_Noto 6.42 small profile SeqLogo of Vsx1_Uncx_Prrx2_Shox2_Noto
Hoxd11_Cdx1_Hoxc11 6.40 small profile SeqLogo of Hoxd11_Cdx1_Hoxc11
Cux1 6.40 small profile SeqLogo of Cux1
Rxra 6.35 small profile SeqLogo of Rxra
Pou5f1 6.16 small profile SeqLogo of Pou5f1
Smarcc1_Fosl1 6.13 small profile SeqLogo of Smarcc1_Fosl1
Gsx1_Alx1_Mixl1_Lbx2 6.13 small profile SeqLogo of Gsx1_Alx1_Mixl1_Lbx2
Hmbox1 6.12 small profile SeqLogo of Hmbox1
Pou3f2 6.06 small profile SeqLogo of Pou3f2
Hlf 6.02 small profile SeqLogo of Hlf
Taf1 6.00 small profile SeqLogo of Taf1
Ebf1 5.97 small profile SeqLogo of Ebf1
Hoxa10 5.94 small profile SeqLogo of Hoxa10
Hoxa11_Hoxc12 5.86 small profile SeqLogo of Hoxa11_Hoxc12
Sox2 5.84 small profile SeqLogo of Sox2
Hand1 5.84 small profile SeqLogo of Hand1
Nr1h4 5.70 small profile SeqLogo of Nr1h4
Sox3_Sox10 5.68 small profile SeqLogo of Sox3_Sox10
Nkx6-1_Evx1_Hesx1 5.66 small profile SeqLogo of Nkx6-1_Evx1_Hesx1
Zic2 5.65 small profile SeqLogo of Zic2
Gata6 5.62 small profile SeqLogo of Gata6
Mef2c 5.62 small profile SeqLogo of Mef2c
Pax3 5.60 small profile SeqLogo of Pax3
Pou2f2_Pou3f1 5.58 small profile SeqLogo of Pou2f2_Pou3f1
Foxk1_Foxj1 5.56 small profile SeqLogo of Foxk1_Foxj1
Ar 5.55 small profile SeqLogo of Ar
Etv3_Erf_Fev_Elk4_Elk1_Elk3 5.55 small profile SeqLogo of Etv3_Erf_Fev_Elk4_Elk1_Elk3
Nr2f6 5.49 small profile SeqLogo of Nr2f6
Hoxb2_Dlx2 5.48 small profile SeqLogo of Hoxb2_Dlx2
Pou1f1 5.46 small profile SeqLogo of Pou1f1
Rarg 5.45 small profile SeqLogo of Rarg
Cebpa_Cebpg 5.41 small profile SeqLogo of Cebpa_Cebpg
Trp53 5.41 small profile SeqLogo of Trp53
Klf1 5.38 small profile SeqLogo of Klf1
Zfp384 5.32 small profile SeqLogo of Zfp384
Olig2_Olig3 5.29 small profile SeqLogo of Olig2_Olig3
Nkx2-9 5.25 small profile SeqLogo of Nkx2-9
Rhox11 5.21 small profile SeqLogo of Rhox11
Nkx2-4 5.11 small profile SeqLogo of Nkx2-4
Cxxc1 5.02 small profile SeqLogo of Cxxc1
Mybl2 5.00 small profile SeqLogo of Mybl2
Nfatc1 4.97 small profile SeqLogo of Nfatc1
Irf2_Irf1_Irf8_Irf9_Irf7 4.96 small profile SeqLogo of Irf2_Irf1_Irf8_Irf9_Irf7
Meox2 4.94 small profile SeqLogo of Meox2
Nkx2-5 4.90 small profile SeqLogo of Nkx2-5
Nr2f1_Nr4a1 4.87 small profile SeqLogo of Nr2f1_Nr4a1
Atf3 4.87 small profile SeqLogo of Atf3
Gata2_Gata1 4.86 small profile SeqLogo of Gata2_Gata1
Tead1 4.82 small profile SeqLogo of Tead1
Tcf21_Msc 4.81 small profile SeqLogo of Tcf21_Msc
Zbtb3 4.80 small profile SeqLogo of Zbtb3
Nr3c2 4.74 small profile SeqLogo of Nr3c2
Foxc1 4.73 small profile SeqLogo of Foxc1
Nr1i3 4.71 small profile SeqLogo of Nr1i3
Zfp219_Zfp740 4.70 small profile SeqLogo of Zfp219_Zfp740
Glis2 4.69 small profile SeqLogo of Glis2
Spic 4.68 small profile SeqLogo of Spic
Arntl_Tfe3_Mlx_Mitf_Mlxipl_Tfec 4.62 small profile SeqLogo of Arntl_Tfe3_Mlx_Mitf_Mlxipl_Tfec
Ddit3 4.60 small profile SeqLogo of Ddit3
Rara 4.53 small profile SeqLogo of Rara
Hoxa4 4.53 small profile SeqLogo of Hoxa4
Klf16_Sp8 4.51 small profile SeqLogo of Klf16_Sp8
Arid5b 4.49 small profile SeqLogo of Arid5b
Hoxd9 4.49 small profile SeqLogo of Hoxd9
Pou6f2_Pou4f2 4.48 small profile SeqLogo of Pou6f2_Pou4f2
Tcf7_Tcf7l2 4.48 small profile SeqLogo of Tcf7_Tcf7l2
Erg 4.41 small profile SeqLogo of Erg
Zbtb33_Chd2 4.41 small profile SeqLogo of Zbtb33_Chd2
Pbx1_Pbx3 4.32 small profile SeqLogo of Pbx1_Pbx3
Foxp2_Foxp3 4.32 small profile SeqLogo of Foxp2_Foxp3
Tbp 4.28 small profile SeqLogo of Tbp
Hinfp 4.27 small profile SeqLogo of Hinfp
Nkx2-2 4.25 small profile SeqLogo of Nkx2-2
Sp1 4.24 small profile SeqLogo of Sp1
Mybl1 4.22 small profile SeqLogo of Mybl1
Osr2_Osr1 4.21 small profile SeqLogo of Osr2_Osr1
Vdr 4.19 small profile SeqLogo of Vdr
Nkx2-1 4.15 small profile SeqLogo of Nkx2-1
Tfdp1_Wt1_Egr2 4.10 small profile SeqLogo of Tfdp1_Wt1_Egr2
Otx1 4.10 small profile SeqLogo of Otx1
Zbtb7b 3.97 small profile SeqLogo of Zbtb7b
Hdx 3.94 small profile SeqLogo of Hdx
Etv4 3.91 small profile SeqLogo of Etv4
Elf3 3.88 small profile SeqLogo of Elf3
Hmga2 3.85 small profile SeqLogo of Hmga2
Scrt1 3.81 small profile SeqLogo of Scrt1
Ubp1 3.79 small profile SeqLogo of Ubp1
Tfcp2 3.78 small profile SeqLogo of Tfcp2
Plagl1 3.75 small profile SeqLogo of Plagl1
Klf7 3.75 small profile SeqLogo of Klf7
Ets1 3.72 small profile SeqLogo of Ets1
Pax1_Pax9 3.71 small profile SeqLogo of Pax1_Pax9
Alx4 3.70 small profile SeqLogo of Alx4
Tfeb_Usf1_Srebf1_Usf2_Bhlhe41_Srebf2 3.69 small profile SeqLogo of Tfeb_Usf1_Srebf1_Usf2_Bhlhe41_Srebf2
Onecut2_Onecut3 3.69 small profile SeqLogo of Onecut2_Onecut3
Cebpe 3.69 small profile SeqLogo of Cebpe
Nfix 3.68 small profile SeqLogo of Nfix
Foxf1 3.68 small profile SeqLogo of Foxf1
Nkx3-2 3.63 small profile SeqLogo of Nkx3-2
Zfp784 3.63 small profile SeqLogo of Zfp784
Zbtb7a 3.62 small profile SeqLogo of Zbtb7a
Hoxc13_Hoxd13 3.61 small profile SeqLogo of Hoxc13_Hoxd13
Hoxa1 3.56 small profile SeqLogo of Hoxa1
Maf_Nrl 3.56 small profile SeqLogo of Maf_Nrl
Zbtb12 3.50 small profile SeqLogo of Zbtb12
Hoxc4_Arx_Otp_Esx1_Phox2b 3.49 small profile SeqLogo of Hoxc4_Arx_Otp_Esx1_Phox2b
Spib 3.47 small profile SeqLogo of Spib
Lhx4 3.46 small profile SeqLogo of Lhx4
Junb_Jund 3.45 small profile SeqLogo of Junb_Jund
Esrrb_Esrra 3.44 small profile SeqLogo of Esrrb_Esrra
Nr2e3 3.43 small profile SeqLogo of Nr2e3
Klf6_Patz1 3.42 small profile SeqLogo of Klf6_Patz1
Epas1_Bcl3 3.41 small profile SeqLogo of Epas1_Bcl3
Klf12_Klf14_Sp4 3.40 small profile SeqLogo of Klf12_Klf14_Sp4
Nr1h2 3.37 small profile SeqLogo of Nr1h2
Homez 3.34 small profile SeqLogo of Homez
Tlx1 3.34 small profile SeqLogo of Tlx1
Ascl2 3.31 small profile SeqLogo of Ascl2
Foxp1_Foxj2 3.29 small profile SeqLogo of Foxp1_Foxj2
Fosl2_Bach2 3.28 small profile SeqLogo of Fosl2_Bach2
Hsfy2 3.28 small profile SeqLogo of Hsfy2
Ctcfl_Ctcf 3.27 small profile SeqLogo of Ctcfl_Ctcf
Myod1 3.22 small profile SeqLogo of Myod1
Zic3 3.21 small profile SeqLogo of Zic3
Tbx5 3.17 small profile SeqLogo of Tbx5
Tbr1 3.17 small profile SeqLogo of Tbr1
Rest 3.15 small profile SeqLogo of Rest
Zfp691 3.14 small profile SeqLogo of Zfp691
Nr2f2 3.12 small profile SeqLogo of Nr2f2
Cenpb 3.11 small profile SeqLogo of Cenpb
Irx6_Irx2_Irx3 3.09 small profile SeqLogo of Irx6_Irx2_Irx3
Tcf3 3.08 small profile SeqLogo of Tcf3
Foxc2 3.08 small profile SeqLogo of Foxc2
Chd1_Pml 3.06 small profile SeqLogo of Chd1_Pml
Foxd2 3.05 small profile SeqLogo of Foxd2
Nr2e1 3.04 small profile SeqLogo of Nr2e1
Dbp 3.03 small profile SeqLogo of Dbp
Pitx3 3.03 small profile SeqLogo of Pitx3
Hoxd8 3.02 small profile SeqLogo of Hoxd8
Creb1 3.02 small profile SeqLogo of Creb1
Tfap2a 3.01 small profile SeqLogo of Tfap2a
Ppara 3.00 small profile SeqLogo of Ppara
Cpeb1 3.00 small profile SeqLogo of Cpeb1
Sp100 2.99 small profile SeqLogo of Sp100
Nfatc3 2.99 small profile SeqLogo of Nfatc3
Nkx3-1 2.97 small profile SeqLogo of Nkx3-1
E2f1 2.93 small profile SeqLogo of E2f1
Six6 2.93 small profile SeqLogo of Six6
Zbtb16 2.92 small profile SeqLogo of Zbtb16
Tbx15 2.89 small profile SeqLogo of Tbx15
Nr2c2 2.88 small profile SeqLogo of Nr2c2
Dlx5_Dlx4 2.88 small profile SeqLogo of Dlx5_Dlx4
E2f3 2.87 small profile SeqLogo of E2f3
Brca1 2.86 small profile SeqLogo of Brca1
Zfp524 2.85 small profile SeqLogo of Zfp524
Zfp263 2.84 small profile SeqLogo of Zfp263
Isl2 2.84 small profile SeqLogo of Isl2
Id4 2.83 small profile SeqLogo of Id4
Stat2 2.82 small profile SeqLogo of Stat2
Hoxb8_Pdx1 2.81 small profile SeqLogo of Hoxb8_Pdx1
E2f7 2.81 small profile SeqLogo of E2f7
Myf6 2.78 small profile SeqLogo of Myf6
Tfcp2l1 2.77 small profile SeqLogo of Tfcp2l1
Gli3_Zic1 2.74 small profile SeqLogo of Gli3_Zic1
Hoxa7_Hoxc8 2.73 small profile SeqLogo of Hoxa7_Hoxc8
En2 2.73 small profile SeqLogo of En2
Barhl1 2.72 small profile SeqLogo of Barhl1
Hsf1 2.72 small profile SeqLogo of Hsf1
En1 2.70 small profile SeqLogo of En1
Nr2c1 2.69 small profile SeqLogo of Nr2c1
Hoxa9_Hoxb9 2.68 small profile SeqLogo of Hoxa9_Hoxb9
Foxa3 2.68 small profile SeqLogo of Foxa3
Tfap4 2.67 small profile SeqLogo of Tfap4
Hsf2 2.66 small profile SeqLogo of Hsf2
Hoxd10 2.64 small profile SeqLogo of Hoxd10
Sox6_Sox9 2.64 small profile SeqLogo of Sox6_Sox9
Lhx8 2.64 small profile SeqLogo of Lhx8
Atf7_E4f1 2.63 small profile SeqLogo of Atf7_E4f1
Irf4 2.61 small profile SeqLogo of Irf4
Runx1 2.57 small profile SeqLogo of Runx1
Mafa 2.55 small profile SeqLogo of Mafa
Mbd2 2.55 small profile SeqLogo of Mbd2
Pou2f1 2.54 small profile SeqLogo of Pou2f1
Rarb 2.53 small profile SeqLogo of Rarb
Jun 2.53 small profile SeqLogo of Jun
Meis1 2.52 small profile SeqLogo of Meis1
Foxq1 2.48 small profile SeqLogo of Foxq1
Mafb 2.48 small profile SeqLogo of Mafb
Sox18_Sox12 2.46 small profile SeqLogo of Sox18_Sox12
Fos 2.44 small profile SeqLogo of Fos
Sox13 2.44 small profile SeqLogo of Sox13
E2f2_E2f5 2.44 small profile SeqLogo of E2f2_E2f5
Hoxc10 2.44 small profile SeqLogo of Hoxc10
T 2.43 small profile SeqLogo of T
Dlx1 2.42 small profile SeqLogo of Dlx1
Etv6 2.41 small profile SeqLogo of Etv6
Obox1 2.41 small profile SeqLogo of Obox1
Neurod2_Bhlha15_Bhlhe22_Olig1 2.39 small profile SeqLogo of Neurod2_Bhlha15_Bhlhe22_Olig1
Aire 2.38 small profile SeqLogo of Aire
Zfp652 2.37 small profile SeqLogo of Zfp652
Zkscan3 2.35 small profile SeqLogo of Zkscan3
Obox6_Obox5 2.34 small profile SeqLogo of Obox6_Obox5
Sox21 2.31 small profile SeqLogo of Sox21
Gmeb2 2.30 small profile SeqLogo of Gmeb2
Stat5a 2.30 small profile SeqLogo of Stat5a
Bptf 2.29 small profile SeqLogo of Bptf
Foxb1 2.28 small profile SeqLogo of Foxb1
Rreb1 2.28 small profile SeqLogo of Rreb1
Ezh2_Atf2_Ikzf1 2.28 small profile SeqLogo of Ezh2_Atf2_Ikzf1
Tlx2 2.27 small profile SeqLogo of Tlx2
Tfap2d 2.26 small profile SeqLogo of Tfap2d
Rorc_Nr1d1 2.25 small profile SeqLogo of Rorc_Nr1d1
Lhx3