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ENCODE: H3K4me3 ChIP-Seq of different mouse tissues during embryonic development

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CREMA identifies cis-regulatory elements genome-wide and models their activities across samples in terms of predicted transcription factor binding sites within them.

Regulatory motifs sorted by significance (z-value)

Motif name	Z-value	Associated genes
Irf2_Irf1_Irf8_Irf9_Irf7	10.67	Irf2 Ensembl NCBI MGI UniProt Irf1 Ensembl NCBI MGI UniProt Irf8 Ensembl NCBI MGI UniProt Irf9 Ensembl NCBI MGI UniProt Irf7 Ensembl NCBI MGI UniProt
Rfx3_Rfx1_Rfx4	9.55	Rfx3 Ensembl NCBI MGI UniProt Rfx1 Ensembl NCBI MGI UniProt Rfx4 Ensembl NCBI MGI UniProt
Zfx_Zfp711	9.14	Zfx Ensembl NCBI MGI UniProt Zfp711 Ensembl NCBI MGI UniProt
Rest	8.44	Rest Ensembl NCBI MGI UniProt
Tal1	8.40	Tal1 Ensembl NCBI MGI UniProt
Mecp2	7.60	Mecp2 Ensembl NCBI MGI UniProt
Wrnip1_Mta3_Rcor1	7.13	Wrnip1 Ensembl NCBI MGI UniProt Mta3 Ensembl NCBI MGI UniProt Rcor1 Ensembl NCBI MGI UniProt
Gfi1_Gfi1b	7.00	Gfi1 Ensembl NCBI MGI UniProt Gfi1b Ensembl NCBI MGI UniProt
Mef2b	6.55	Mef2b Ensembl NCBI MGI UniProt
Nfic_Nfib	5.68	Nfic Ensembl NCBI MGI UniProt Nfib Ensembl NCBI MGI UniProt
Ahr	5.66	Ahr Ensembl NCBI MGI UniProt
Smad1	5.48	Smad1 Ensembl NCBI MGI UniProt
Runx2_Bcl11a	5.15	Runx2 Ensembl NCBI MGI UniProt Bcl11a Ensembl NCBI MGI UniProt
Elf1_Elf2_Etv2_Elf4	5.13	Elf1 Ensembl NCBI MGI UniProt Elf2 Ensembl NCBI MGI UniProt Etv2 Ensembl NCBI MGI UniProt Elf4 Ensembl NCBI MGI UniProt
Foxj3_Tbl1xr1	4.97	Foxj3 Ensembl NCBI MGI UniProt Tbl1xr1 Ensembl NCBI MGI UniProt
Tgif1_Meis3	4.89	Tgif1 Ensembl NCBI MGI UniProt Meis3 Ensembl NCBI MGI UniProt
Sox14	4.82	Sox14 Ensembl NCBI MGI UniProt
Spi1	4.64	Spi1 Ensembl NCBI MGI UniProt
Tfdp1_Wt1_Egr2	4.63	Tfdp1 Ensembl NCBI MGI UniProt Wt1 Ensembl NCBI MGI UniProt Egr2 Ensembl NCBI MGI UniProt
Hmga1	4.50	Hmga1 Ensembl NCBI MGI UniProt
Etv1_Etv5_Gabpa	4.46	Etv1 Ensembl NCBI MGI UniProt Etv5 Ensembl NCBI MGI UniProt Gabpa Ensembl NCBI MGI UniProt
Zbtb18	4.45	Zbtb18 Ensembl NCBI MGI UniProt
Hcfc1_Six5_Smarcc2_Zfp143	4.32	Hcfc1 Ensembl NCBI MGI UniProt Six5 Ensembl NCBI MGI UniProt Smarcc2 Ensembl NCBI MGI UniProt Zfp143 Ensembl NCBI MGI UniProt
Pou1f1	4.30	Pou1f1 Ensembl NCBI MGI UniProt
Gata5	4.26	Gata5 Ensembl NCBI MGI UniProt
Esr2	4.22	Esr2 Ensembl NCBI MGI UniProt
Nrf1	4.03	Nrf1 Ensembl NCBI MGI UniProt
Zfp691	3.97	Zfp691 Ensembl NCBI MGI UniProt
Rfx2_Rfx7	3.93	Rfx2 Ensembl NCBI MGI UniProt Rfx7 Ensembl NCBI MGI UniProt
Hnf1b	3.87	Hnf1b Ensembl NCBI MGI UniProt
Gata3	3.84	Gata3 Ensembl NCBI MGI UniProt
Yy1_Yy2	3.81	Yy1 Ensembl NCBI MGI UniProt Yy2 Ensembl NCBI MGI UniProt
Sp100	3.80	Sp100 Ensembl NCBI MGI UniProt
Snai1_Zeb1_Snai2	3.77	Snai1 Ensembl NCBI MGI UniProt Zeb1 Ensembl NCBI MGI UniProt Snai2 Ensembl NCBI MGI UniProt
Zfp384	3.73	Zfp384 Ensembl NCBI MGI UniProt
Hsfy2	3.72	Hsfy2 Ensembl NCBI MGI UniProt
Hmbox1	3.68	Hmbox1 Ensembl NCBI MGI UniProt
Hbp1	3.67	Hbp1 Ensembl NCBI MGI UniProt
Mybl2	3.67	Mybl2 Ensembl NCBI MGI UniProt
Chd1_Pml	3.66	Chd1 Ensembl NCBI MGI UniProt Pml Ensembl NCBI MGI UniProt
Foxc1	3.64	Foxc1 Ensembl NCBI MGI UniProt
Zic2	3.60	Zic2 Ensembl NCBI MGI UniProt
Hinfp	3.55	Hinfp Ensembl NCBI MGI UniProt
Irx6_Irx2_Irx3	3.53	Irx6 Ensembl NCBI MGI UniProt Irx2 Ensembl NCBI MGI UniProt Irx3 Ensembl NCBI MGI UniProt
Ebf1	3.53	Ebf1 Ensembl NCBI MGI UniProt Ebf1 Ensembl NCBI MGI UniProt
Smarcc1_Fosl1	3.53	Smarcc1 Ensembl NCBI MGI UniProt Fosl1 Ensembl NCBI MGI UniProt
Gata4	3.49	Gata4 Ensembl NCBI MGI UniProt
Pou2f3	3.35	Pou2f3 Ensembl NCBI MGI UniProt
Hnf4g	3.26	Hnf4g Ensembl NCBI MGI UniProt
Nhlh1	3.26	Nhlh1 Ensembl NCBI MGI UniProt
Hmga2	3.25	Hmga2 Ensembl NCBI MGI UniProt
Pax6	3.23	Pax6 Ensembl NCBI MGI UniProt
Plag1	3.22	Plag1 Ensembl NCBI MGI UniProt
Arid5b	3.16	Arid5b Ensembl NCBI MGI UniProt
Nfia	3.14	Nfia Ensembl NCBI MGI UniProt
Maz_Zfp281	3.11	Maz Ensembl NCBI MGI UniProt Zfp281 Ensembl NCBI MGI UniProt
Hoxa5	3.07	Hoxa5 Ensembl NCBI MGI UniProt
Tead3_Tead4	3.06	Tead3 Ensembl NCBI MGI UniProt Tead4 Ensembl NCBI MGI UniProt
Isl1	3.05	Isl1 Ensembl NCBI MGI UniProt
Sox2	3.03	Sox2 Ensembl NCBI MGI UniProt
Klf12_Klf14_Sp4	3.03	Klf12 Ensembl NCBI MGI UniProt Klf14 Ensembl NCBI MGI UniProt Sp4 Ensembl NCBI MGI UniProt
Spic	3.01	Spic Ensembl NCBI MGI UniProt
Hic2	3.00	Hic2 Ensembl NCBI MGI UniProt
Prdm1	3.00	Prdm1 Ensembl NCBI MGI UniProt
Ybx1_Nfya_Nfyb_Nfyc_Cebpz	2.96	Ybx1 Ensembl NCBI MGI UniProt Nfya Ensembl NCBI MGI UniProt Nfyb Ensembl NCBI MGI UniProt Nfyc Ensembl NCBI MGI UniProt Cebpz Ensembl NCBI MGI UniProt
Rad21_Smc3	2.93	Rad21 Ensembl NCBI MGI UniProt Smc3 Ensembl NCBI MGI UniProt
Irf4	2.93	Irf4 Ensembl NCBI MGI UniProt
Pou5f1	2.92	Pou5f1 Ensembl NCBI MGI UniProt
Pparg_Rxrg	2.90	Pparg Ensembl NCBI MGI UniProt Rxrg Ensembl NCBI MGI UniProt
Klf4_Sp3	2.89	Klf4 Ensembl NCBI MGI UniProt Sp3 Ensembl NCBI MGI UniProt
Scrt1	2.88	Scrt1 Ensembl NCBI MGI UniProt
Sp1	2.84	Sp1 Ensembl NCBI MGI UniProt
Cxxc1	2.84	Cxxc1 Ensembl NCBI MGI UniProt
Ubp1	2.83	Ubp1 Ensembl NCBI MGI UniProt
Cux1	2.82	Cux1 Ensembl NCBI MGI UniProt
Gcm2	2.82	Gcm2 Ensembl NCBI MGI UniProt
Homez	2.80	Homez Ensembl NCBI MGI UniProt
Epas1_Bcl3	2.80	Epas1 Ensembl NCBI MGI UniProt Bcl3 Ensembl NCBI MGI UniProt
Gata2_Gata1	2.79	Gata2 Ensembl NCBI MGI UniProt Gata1 Ensembl NCBI MGI UniProt
Hdx	2.79	Hdx Ensembl NCBI MGI UniProt
E2f3	2.77	E2f3 Ensembl NCBI MGI UniProt
Taf1	2.72	Taf1 Ensembl NCBI MGI UniProt
Pou4f1_Pou6f1	2.72	Pou4f1 Ensembl NCBI MGI UniProt Pou6f1 Ensembl NCBI MGI UniProt
Tlx2	2.70	Tlx2 Ensembl NCBI MGI UniProt
Klf1	2.69	Klf1 Ensembl NCBI MGI UniProt
Zbtb33_Chd2	2.67	Zbtb33 Ensembl NCBI MGI UniProt Chd2 Ensembl NCBI MGI UniProt
Bptf	2.66	Bptf Ensembl NCBI MGI UniProt
Mef2c	2.64	Mef2c Ensembl NCBI MGI UniProt
Hic1	2.62	Hic1 Ensembl NCBI MGI UniProt
Hsf2	2.53	Hsf2 Ensembl NCBI MGI UniProt
Klf7	2.52	Klf7 Ensembl NCBI MGI UniProt
Hoxb13	2.51	Hoxb13 Ensembl NCBI MGI UniProt
Hnf4a	2.51	Hnf4a Ensembl NCBI MGI UniProt
Tfeb_Usf1_Srebf1_Usf2_Bhlhe41_Srebf2	2.50	Tfeb Ensembl NCBI MGI UniProt Usf1 Ensembl NCBI MGI UniProt Srebf1 Ensembl NCBI MGI UniProt Usf2 Ensembl NCBI MGI UniProt Bhlhe41 Ensembl NCBI MGI UniProt Srebf2 Ensembl NCBI MGI UniProt
Klf16_Sp8	2.49	Klf16 Ensembl NCBI MGI UniProt Sp8 Ensembl NCBI MGI UniProt
Hsf4	2.49	Hsf4 Ensembl NCBI MGI UniProt
Hoxa10	2.47	Hoxa10 Ensembl NCBI MGI UniProt
Arntl_Tfe3_Mlx_Mitf_Mlxipl_Tfec	2.47	Arntl Ensembl NCBI MGI UniProt Tfe3 Ensembl NCBI MGI UniProt Mlx Ensembl NCBI MGI UniProt Mitf Ensembl NCBI MGI UniProt Mlxipl Ensembl NCBI MGI UniProt Tfec Ensembl NCBI MGI UniProt
Nfatc2	2.41	Nfatc2 Ensembl NCBI MGI UniProt
Hoxc9	2.40	Hoxc9 Ensembl NCBI MGI UniProt
Hand1	2.39	Hand1 Ensembl NCBI MGI UniProt
Zbtb7a	2.37	Zbtb7a Ensembl NCBI MGI UniProt
E2f1	2.36	E2f1 Ensembl NCBI MGI UniProt
Irx5	2.32	Irx5 Ensembl NCBI MGI UniProt
Cebpe	2.32	Cebpe Ensembl NCBI MGI UniProt
Zfp524	2.31	Zfp524 Ensembl NCBI MGI UniProt
Zbtb14	2.31	Zbtb14 Ensembl NCBI MGI UniProt
Rreb1	2.28	Rreb1 Ensembl NCBI MGI UniProt
Atf3	2.27	Atf3 Ensembl NCBI MGI UniProt
Pitx3	2.27	Pitx3 Ensembl NCBI MGI UniProt
Foxa2_Foxa1	2.26	Foxa2 Ensembl NCBI MGI UniProt Foxa1 Ensembl NCBI MGI UniProt
Dlx5_Dlx4	2.25	Dlx5 Ensembl NCBI MGI UniProt Dlx4 Ensembl NCBI MGI UniProt
Hoxa11_Hoxc12	2.25	Hoxa11 Ensembl NCBI MGI UniProt Hoxc12 Ensembl NCBI MGI UniProt
Ddit3	2.24	Ddit3 Ensembl NCBI MGI UniProt
Zbtb3	2.23	Zbtb3 Ensembl NCBI MGI UniProt
Mybl1	2.20	Mybl1 Ensembl NCBI MGI UniProt
Tead1	2.20	Tead1 Ensembl NCBI MGI UniProt
E2f7	2.18	E2f7 Ensembl NCBI MGI UniProt
Tfcp2	2.16	Tfcp2 Ensembl NCBI MGI UniProt
Hlf	2.15	Hlf Ensembl NCBI MGI UniProt
Srf	2.11	Srf Ensembl NCBI MGI UniProt
Myf6	2.11	Myf6 Ensembl NCBI MGI UniProt
Hoxa2	2.10	Hoxa2 Ensembl NCBI MGI UniProt
Nkx2-2	2.10	Nkx2-2 Ensembl NCBI MGI UniProt
Id4	2.09	Id4 Ensembl NCBI MGI UniProt
Tbp	2.07	Tbp Ensembl NCBI MGI UniProt
Ar	2.07	Ar Ensembl NCBI MGI UniProt
Nkx2-4	2.07	Nkx2-4 Ensembl NCBI MGI UniProt
Tfap2a	2.05	Tfap2a Ensembl NCBI MGI UniProt
Pou3f4	2.04	Pou3f4 Ensembl NCBI MGI UniProt
Olig2_Olig3	2.01	Olig2 Ensembl NCBI MGI UniProt Olig3 Ensembl NCBI MGI UniProt
Stat5a	2.00	Stat5a Ensembl NCBI MGI UniProt
Hnf1a	1.98	Hnf1a Ensembl NCBI MGI UniProt
Aire	1.97	Aire Ensembl NCBI MGI UniProt
Sox3_Sox10	1.96	Sox3 Ensembl NCBI MGI UniProt Sox10 Ensembl NCBI MGI UniProt
Glis2	1.94	Glis2 Ensembl NCBI MGI UniProt
Cenpb	1.94	Cenpb Ensembl NCBI MGI UniProt
Gtf2i_Gtf2f1	1.94	Gtf2i Ensembl NCBI MGI UniProt Gtf2f1 Ensembl NCBI MGI UniProt
Hoxa1	1.93	Hoxa1 Ensembl NCBI MGI UniProt
Pbx2	1.91	Pbx2 Ensembl NCBI MGI UniProt
Nr2f2	1.89	Nr2f2 Ensembl NCBI MGI UniProt
Zfp110	1.89	Zfp110 Ensembl NCBI MGI UniProt
Nfe2_Bach1_Mafk	1.89	Nfe2 Ensembl NCBI MGI UniProt Bach1 Ensembl NCBI MGI UniProt Mafk Ensembl NCBI MGI UniProt
Hes1	1.87	Hes1 Ensembl NCBI MGI UniProt
Cebpb	1.86	Cebpb Ensembl NCBI MGI UniProt
Sox8	1.85	Sox8 Ensembl NCBI MGI UniProt
Rorc_Nr1d1	1.83	Rorc Ensembl NCBI MGI UniProt Nr1d1 Ensembl NCBI MGI UniProt
Pou2f1	1.82	Pou2f1 Ensembl NCBI MGI UniProt
Sox6_Sox9	1.81	Sox6 Ensembl NCBI MGI UniProt Sox9 Ensembl NCBI MGI UniProt
Klf6_Patz1	1.80	Klf6 Ensembl NCBI MGI UniProt Patz1 Ensembl NCBI MGI UniProt
Pbx1_Pbx3	1.80	Pbx1 Ensembl NCBI MGI UniProt Pbx3 Ensembl NCBI MGI UniProt
Foxk1_Foxj1	1.79	Foxk1 Ensembl NCBI MGI UniProt Foxj1 Ensembl NCBI MGI UniProt
Sox18_Sox12	1.78	Sox18 Ensembl NCBI MGI UniProt Sox12 Ensembl NCBI MGI UniProt
Hoxd10	1.78	Hoxd10 Ensembl NCBI MGI UniProt
Atf7_E4f1	1.77	Atf7 Ensembl NCBI MGI UniProt Atf7 Ensembl NCBI MGI UniProt E4f1 Ensembl NCBI MGI UniProt
Dbp	1.77	Dbp Ensembl NCBI MGI UniProt
Zbtb7b	1.77	Zbtb7b Ensembl NCBI MGI UniProt
Pitx2_Otx2	1.76	Pitx2 Ensembl NCBI MGI UniProt Otx2 Ensembl NCBI MGI UniProt
Rarg	1.76	Rarg Ensembl NCBI MGI UniProt
Gsx1_Alx1_Mixl1_Lbx2	1.75	Gsx1 Ensembl NCBI MGI UniProt Alx1 Ensembl NCBI MGI UniProt Mixl1 Ensembl NCBI MGI UniProt Lbx2 Ensembl NCBI MGI UniProt
Atf1_Creb5	1.75	Atf1 Ensembl NCBI MGI UniProt Creb5 Ensembl NCBI MGI UniProt
Gmeb2	1.72	Gmeb2 Ensembl NCBI MGI UniProt
Tcf7_Tcf7l2	1.72	Tcf7 Ensembl NCBI MGI UniProt Tcf7l2 Ensembl NCBI MGI UniProt
Elf5	1.71	Elf5 Ensembl NCBI MGI UniProt
Irf5_Irf6	1.71	Irf5 Ensembl NCBI MGI UniProt Irf6 Ensembl NCBI MGI UniProt
Spib	1.70	Spib Ensembl NCBI MGI UniProt
Mef2d_Mef2a	1.70	Mef2d Ensembl NCBI MGI UniProt Mef2a Ensembl NCBI MGI UniProt
E2f2_E2f5	1.69	E2f2 Ensembl NCBI MGI UniProt E2f5 Ensembl NCBI MGI UniProt
Irf3	1.69	Irf3 Ensembl NCBI MGI UniProt
Nfix	1.68	Nfix Ensembl NCBI MGI UniProt
Zfp219_Zfp740	1.68	Zfp219 Ensembl NCBI MGI UniProt Zfp740 Ensembl NCBI MGI UniProt
Zbtb12	1.68	Zbtb12 Ensembl NCBI MGI UniProt
Rhox11	1.68	Rhox11 Ensembl NCBI MGI UniProt
Lhx8	1.68	Lhx8 Ensembl NCBI MGI UniProt
Hoxd9	1.67	Hoxd9 Ensembl NCBI MGI UniProt
Nr1i2	1.67	Nr1i2 Ensembl NCBI MGI UniProt
Twist1	1.66	Twist1 Ensembl NCBI MGI UniProt
Osr2_Osr1	1.65	Osr2 Ensembl NCBI MGI UniProt Osr1 Ensembl NCBI MGI UniProt
Hoxc13_Hoxd13	1.65	Hoxc13 Ensembl NCBI MGI UniProt Hoxd13 Ensembl NCBI MGI UniProt
Alx4	1.65	Alx4 Ensembl NCBI MGI UniProt
Six6	1.64	Six6 Ensembl NCBI MGI UniProt
Max_Mycn	1.64	Max Ensembl NCBI MGI UniProt Mycn Ensembl NCBI MGI UniProt
Otx1	1.64	Otx1 Ensembl NCBI MGI UniProt
Tbx15	1.62	Tbx15 Ensembl NCBI MGI UniProt
Nfil3_Tef	1.62	Nfil3 Ensembl NCBI MGI UniProt Tef Ensembl NCBI MGI UniProt
Obox6_Obox5	1.62	Obox6 Ensembl NCBI MGI UniProt Obox5 Ensembl NCBI MGI UniProt
Stat2	1.62	Stat2 Ensembl NCBI MGI UniProt
Meox2	1.61	Meox2 Ensembl NCBI MGI UniProt
Zfp784	1.60	Zfp784 Ensembl NCBI MGI UniProt
Esr1	1.58	Esr1 Ensembl NCBI MGI UniProt
Mafa	1.58	Mafa Ensembl NCBI MGI UniProt
Nr1i3	1.58	Nr1i3 Ensembl NCBI MGI UniProt
Tcf21_Msc	1.57	Tcf21 Ensembl NCBI MGI UniProt Msc Ensembl NCBI MGI UniProt
Rxra	1.57	Rxra Ensembl NCBI MGI UniProt
Elf3	1.56	Elf3 Ensembl NCBI MGI UniProt
Nkx3-1	1.56	Nkx3-1 Ensembl NCBI MGI UniProt
Foxp1_Foxj2	1.56	Foxp1 Ensembl NCBI MGI UniProt Foxj2 Ensembl NCBI MGI UniProt
Ets1	1.55	Ets1 Ensembl NCBI MGI UniProt
Pou2f2_Pou3f1	1.55	Pou2f2 Ensembl NCBI MGI UniProt Pou3f1 Ensembl NCBI MGI UniProt
Nr2e3	1.54	Nr2e3 Ensembl NCBI MGI UniProt
Hoxb8_Pdx1	1.54	Hoxb8 Ensembl NCBI MGI UniProt Pdx1 Ensembl NCBI MGI UniProt
Klf8	1.53	Klf8 Ensembl NCBI MGI UniProt
Rela_Rel_Nfkb1	1.53	Rela Ensembl NCBI MGI UniProt Rel Ensembl NCBI MGI UniProt Nfkb1 Ensembl NCBI MGI UniProt
Batf	1.53	Batf Ensembl NCBI MGI UniProt
Foxi1_Foxo1	1.53	Foxi1 Ensembl NCBI MGI UniProt Foxo1 Ensembl NCBI MGI UniProt
Nanog	1.52	Nanog Ensembl NCBI MGI UniProt
Nfatc1	1.51	Nfatc1 Ensembl NCBI MGI UniProt
Brca1	1.51	Brca1 Ensembl NCBI MGI UniProt
Erg	1.51	Erg Ensembl NCBI MGI UniProt
Tfap4	1.51	Tfap4 Ensembl NCBI MGI UniProt
Plagl1	1.51	Plagl1 Ensembl NCBI MGI UniProt
Foxd2	1.51	Foxd2 Ensembl NCBI MGI UniProt
Pax5	1.51	Pax5 Ensembl NCBI MGI UniProt
Ctcfl_Ctcf	1.50	Ctcfl Ensembl NCBI MGI UniProt Ctcf Ensembl NCBI MGI UniProt
Esrrb_Esrra	1.49	Esrrb Ensembl NCBI MGI UniProt Esrra Ensembl NCBI MGI UniProt
Zbtb16	1.49	Zbtb16 Ensembl NCBI MGI UniProt
Msx2_Hoxd4	1.49	Msx2 Ensembl NCBI MGI UniProt
En1	1.48	En1 Ensembl NCBI MGI UniProt
Dmc1	1.48	Dmc1 Ensembl NCBI MGI UniProt
Grhl1	1.47	Grhl1 Ensembl NCBI MGI UniProt
Gmeb1	1.47	Gmeb1 Ensembl NCBI MGI UniProt
Neurod1	1.46	Neurod1 Ensembl NCBI MGI UniProt
Zkscan1	1.46	Zkscan1 Ensembl NCBI MGI UniProt
Nkx3-2	1.46	Nkx3-2 Ensembl NCBI MGI UniProt
Trp53	1.46	Trp53 Ensembl NCBI MGI UniProt
Zbtb6	1.45	Zbtb6 Ensembl NCBI MGI UniProt
Bcl6b	1.45	Bcl6b Ensembl NCBI MGI UniProt
Vdr	1.44	Vdr Ensembl NCBI MGI UniProt
Rara	1.44	Rara Ensembl NCBI MGI UniProt
Klf15	1.44	Klf15 Ensembl NCBI MGI UniProt
Sox21	1.42	Sox21 Ensembl NCBI MGI UniProt
Smad3	1.42	Smad3 Ensembl NCBI MGI UniProt
Zbtb4	1.41	Zbtb4 Ensembl NCBI MGI UniProt
Meis1	1.41	Meis1 Ensembl NCBI MGI UniProt
Tfap2b	1.40	Tfap2b Ensembl NCBI MGI UniProt
Pou6f2_Pou4f2	1.39	Pou6f2 Ensembl NCBI MGI UniProt Pou4f2 Ensembl NCBI MGI UniProt
Pax3	1.38	Pax3 Ensembl NCBI MGI UniProt
Tbr1	1.37	Tbr1 Ensembl NCBI MGI UniProt
Sox17	1.36	Sox17 Ensembl NCBI MGI UniProt
Nkx2-5	1.35	Nkx2-5 Ensembl NCBI MGI UniProt
Creb1	1.35	Creb1 Ensembl NCBI MGI UniProt
Nfatc3	1.35	Nfatc3 Ensembl NCBI MGI UniProt
Zkscan3	1.35	Zkscan3 Ensembl NCBI MGI UniProt
Emx1_Emx2	1.34	Emx1 Ensembl NCBI MGI UniProt Emx2 Ensembl NCBI MGI UniProt
Maf_Nrl	1.34	Maf Ensembl NCBI MGI UniProt Nrl Ensembl NCBI MGI UniProt
E2f4	1.33	E2f4 Ensembl NCBI MGI UniProt
Tcf7l1	1.33	Tcf7l1 Ensembl NCBI MGI UniProt
Nkx2-9	1.33	Nkx2-9 Ensembl NCBI MGI UniProt
Fosl2_Bach2	1.32	Fosl2 Ensembl NCBI MGI UniProt Bach2 Ensembl NCBI MGI UniProt
Zfp263	1.32	Zfp263 Ensembl NCBI MGI UniProt
Onecut1_Cux2	1.31	Onecut1 Ensembl NCBI MGI UniProt Cux2 Ensembl NCBI MGI UniProt Cux2 Ensembl NCBI MGI UniProt
Foxm1	1.31	Foxm1 Ensembl NCBI MGI UniProt
Nkx2-1	1.31	Nkx2-1 Ensembl NCBI MGI UniProt
Six4	1.31	Six4 Ensembl NCBI MGI UniProt
Etv3_Erf_Fev_Elk4_Elk1_Elk3	1.31	Etv3 Ensembl NCBI MGI UniProt Erf Ensembl NCBI MGI UniProt Fev Ensembl NCBI MGI UniProt Elk4 Ensembl NCBI MGI UniProt Elk1 Ensembl NCBI MGI UniProt Elk3 Ensembl NCBI MGI UniProt
Nkx6-1_Evx1_Hesx1	1.30	Nkx6-1 Ensembl NCBI MGI UniProt Evx1 Ensembl NCBI MGI UniProt Hesx1 Ensembl NCBI MGI UniProt
Pou3f2	1.30	Pou3f2 Ensembl NCBI MGI UniProt
Onecut2_Onecut3	1.29	Onecut2 Ensembl NCBI MGI UniProt Onecut3 Ensembl NCBI MGI UniProt
Pax8	1.28	Pax8 Ensembl NCBI MGI UniProt
Hoxa9_Hoxb9	1.28	Hoxa9 Ensembl NCBI MGI UniProt Hoxb9 Ensembl NCBI MGI UniProt
Sox11	1.28	Sox11 Ensembl NCBI MGI UniProt
Foxc2	1.27	Foxc2 Ensembl NCBI MGI UniProt
Foxf1	1.27	Foxf1 Ensembl NCBI MGI UniProt
Crx_Gsc	1.27	Crx Ensembl NCBI MGI UniProt Gsc Ensembl NCBI MGI UniProt
Nkx2-3	1.27	Nkx2-3 Ensembl NCBI MGI UniProt
Zfp652	1.27	Zfp652 Ensembl NCBI MGI UniProt
Smad4	1.27	Smad4 Ensembl NCBI MGI UniProt
Tbx5	1.26	Tbx5 Ensembl NCBI MGI UniProt
Ehf	1.26	Ehf Ensembl NCBI MGI UniProt
Arid3a	1.25	Arid3a Ensembl NCBI MGI UniProt
Hoxb2_Dlx2	1.25	Hoxb2 Ensembl NCBI MGI UniProt Dlx2 Ensembl NCBI MGI UniProt
Rbpj	1.24	Rbpj Ensembl NCBI MGI UniProt
Isl2	1.24	Isl2 Ensembl NCBI MGI UniProt
Maff	1.24	Maff Ensembl NCBI MGI UniProt
Ets2	1.23	Ets2 Ensembl NCBI MGI UniProt
Ppara	1.23	Ppara Ensembl NCBI MGI UniProt
Hoxb5	1.23	Hoxb5 Ensembl NCBI MGI UniProt
Pax4	1.22	Pax4 Ensembl NCBI MGI UniProt
Hmx2	1.22	Hmx2 Ensembl NCBI MGI UniProt
Fli1	1.22	Fli1 Ensembl NCBI MGI UniProt
Cpeb1	1.22	Cpeb1 Ensembl NCBI MGI UniProt
Rfx5	1.22	Rfx5 Ensembl NCBI MGI UniProt
Pitx1	1.22	Pitx1 Ensembl NCBI MGI UniProt
Barhl2	1.21	Barhl2 Ensembl NCBI MGI UniProt
Fubp1	1.21	Fubp1 Ensembl NCBI MGI UniProt
Rora	1.21	Rora Ensembl NCBI MGI UniProt
Dlx1	1.20	Dlx1 Ensembl NCBI MGI UniProt
Nr1h4	1.19	Nr1h4 Ensembl NCBI MGI UniProt
Foxq1	1.19	Foxq1 Ensembl NCBI MGI UniProt
Hoxb3	1.19	Hoxb3 Ensembl NCBI MGI UniProt
Hoxd8	1.17	Hoxd8 Ensembl NCBI MGI UniProt
Gcm1	1.17	Gcm1 Ensembl NCBI MGI UniProt
Hoxa4	1.16	Hoxa4 Ensembl NCBI MGI UniProt
Mafb	1.16	Mafb Ensembl NCBI MGI UniProt
Ebf3	1.16	Ebf3 Ensembl NCBI MGI UniProt
Tfap2d	1.15	Tfap2d Ensembl NCBI MGI UniProt
Nr2f6	1.14	Nr2f6 Ensembl NCBI MGI UniProt
Mtf1	1.13	Mtf1 Ensembl NCBI MGI UniProt
Mbd2	1.13	Mbd2 Ensembl NCBI MGI UniProt
Nr1h2	1.13	Nr1h2 Ensembl NCBI MGI UniProt
Prop1	1.12	Prop1 Ensembl NCBI MGI UniProt
Nr2f1_Nr4a1	1.12	Nr2f1 Ensembl NCBI MGI UniProt Nr4a1 Ensembl NCBI MGI UniProt
Tfap2c	1.12	Tfap2c Ensembl NCBI MGI UniProt
Cebpa_Cebpg	1.12	Cebpa Ensembl NCBI MGI UniProt Cebpg Ensembl NCBI MGI UniProt
Foxa3	1.11	Foxa3 Ensembl NCBI MGI UniProt
T	1.11	T Ensembl NCBI MGI UniProt
Bcl6	1.10	Bcl6 Ensembl NCBI MGI UniProt
Lhx4	1.10	Lhx4 Ensembl NCBI MGI UniProt
Lhx2_Hoxc5	1.10	Lhx2 Ensembl NCBI MGI UniProt Hoxc5 Ensembl NCBI MGI UniProt
Ovol1	1.09	Ovol1 Ensembl NCBI MGI UniProt
Prox1	1.08	Prox1 Ensembl NCBI MGI UniProt
Smad2	1.08	Smad2 Ensembl NCBI MGI UniProt
Hoxc4_Arx_Otp_Esx1_Phox2b	1.08	Hoxc4 Ensembl NCBI MGI UniProt Arx Ensembl NCBI MGI UniProt Otp Ensembl NCBI MGI UniProt Esx1 Ensembl NCBI MGI UniProt Phox2b Ensembl NCBI MGI UniProt
Nfe2l2	1.07	Nfe2l2 Ensembl NCBI MGI UniProt
Obox3	1.07	Obox3 Ensembl NCBI MGI UniProt
Tgif2_Tgif2lx1_Tgif2lx2	1.06	Tgif2 Ensembl NCBI MGI UniProt Tgif2lx1 Ensembl NCBI MGI UniProt Tgif2lx2 Ensembl NCBI MGI UniProt
Tbx19	1.06	Tbx19 Ensembl NCBI MGI UniProt
Rhox4e_Rhox6_Vax2	1.05	Rhox4e Ensembl NCBI MGI UniProt Rhox6 Ensembl NCBI MGI UniProt Vax2 Ensembl NCBI MGI UniProt
Sin3a	1.05	Sin3a Ensembl NCBI MGI UniProt
Prdm14	1.04	Prdm14 Ensembl NCBI MGI UniProt
Stat6	1.04	Stat6 Ensembl NCBI MGI UniProt
Stat4_Stat3_Stat5b	1.04	Stat4 Ensembl NCBI MGI UniProt Stat3 Ensembl NCBI MGI UniProt Stat5b Ensembl NCBI MGI UniProt
Zbtb7c	1.04	Zbtb7c Ensembl NCBI MGI UniProt
Hoxd11_Cdx1_Hoxc11	1.03	Hoxd11 Ensembl NCBI MGI UniProt Cdx1 Ensembl NCBI MGI UniProt Hoxc11 Ensembl NCBI MGI UniProt
Gli3_Zic1	1.03	Gli3 Ensembl NCBI MGI UniProt Zic1 Ensembl NCBI MGI UniProt
Tbx21	1.01	Tbx21 Ensembl NCBI MGI UniProt
Zic4	1.01	Zic4 Ensembl NCBI MGI UniProt
Nr2c2	1.01	Nr2c2 Ensembl NCBI MGI UniProt
Ikzf2	1.00	Ikzf2 Ensembl NCBI MGI UniProt
Zfp105	1.00	Zfp105 Ensembl NCBI MGI UniProt
Creb3	1.00	Creb3 Ensembl NCBI MGI UniProt
Gsx2_Hoxd3_Vax1	1.00	Gsx2 Ensembl NCBI MGI UniProt Hoxd3 Ensembl NCBI MGI UniProt Vax1 Ensembl NCBI MGI UniProt
Prrx1_Isx_Prrxl1	1.00	Prrx1 Ensembl NCBI MGI UniProt Isx Ensembl NCBI MGI UniProt Prrxl1 Ensembl NCBI MGI UniProt
Ascl2	1.00	Ascl2 Ensembl NCBI MGI UniProt
Ptf1a	0.99	Ptf1a Ensembl NCBI MGI UniProt
Xbp1_Creb3l1	0.99	Xbp1 Ensembl NCBI MGI UniProt Creb3l1 Ensembl NCBI MGI UniProt
Zscan4c	0.99	Zscan4c Ensembl NCBI MGI UniProt
Six3_Six1_Six2	0.99	Six3 Ensembl NCBI MGI UniProt Six1 Ensembl NCBI MGI UniProt Six2 Ensembl NCBI MGI UniProt
Zic3	0.98	Zic3 Ensembl NCBI MGI UniProt
Bsx	0.98	Bsx Ensembl NCBI MGI UniProt
Sox1	0.98	Sox1 Ensembl NCBI MGI UniProt
Ezh2_Atf2_Ikzf1	0.98	Ezh2 Ensembl NCBI MGI UniProt Atf2 Ensembl NCBI MGI UniProt Ikzf1 Ensembl NCBI MGI UniProt
Gsc2_Dmbx1	0.98	Gsc2 Ensembl NCBI MGI UniProt Dmbx1 Ensembl NCBI MGI UniProt
Tlx1	0.97	Tlx1 Ensembl NCBI MGI UniProt
Nr2e1	0.96	Nr2e1 Ensembl NCBI MGI UniProt
Gata6	0.96	Gata6 Ensembl NCBI MGI UniProt
Tfcp2l1	0.96	Tfcp2l1 Ensembl NCBI MGI UniProt
Hoxb6	0.96	Hoxb6 Ensembl NCBI MGI UniProt
Runx3	0.96	Runx3 Ensembl NCBI MGI UniProt
Sox4	0.95	Sox4 Ensembl NCBI MGI UniProt
Sox7	0.95	Sox7 Ensembl NCBI MGI UniProt
Runx1	0.95	Runx1 Ensembl NCBI MGI UniProt
Stat1	0.95	Stat1 Ensembl NCBI MGI UniProt
Mnt	0.95	Mnt Ensembl NCBI MGI UniProt
Irx4	0.94	Irx4 Ensembl NCBI MGI UniProt
Neurog2	0.94	Neurog2 Ensembl NCBI MGI UniProt
Zfhx3	0.93	Zfhx3 Ensembl NCBI MGI UniProt
Sox13	0.93	Sox13 Ensembl NCBI MGI UniProt
Insm1	0.93	Insm1 Ensembl NCBI MGI UniProt
Meis2	0.92	Meis2 Ensembl NCBI MGI UniProt
Hoxa7_Hoxc8	0.92	Hoxa7 Ensembl NCBI MGI UniProt Hoxc8 Ensembl NCBI MGI UniProt
Zfp128	0.91	Zfp128 Ensembl NCBI MGI UniProt
Nkx6-3_Dbx2_Barx2	0.91	Nkx6-3 Ensembl NCBI MGI UniProt Dbx2 Ensembl NCBI MGI UniProt Barx2 Ensembl NCBI MGI UniProt
Msx3	0.90	Msx3 Ensembl NCBI MGI UniProt
Foxo6	0.90	Foxo6 Ensembl NCBI MGI UniProt
Nkx6-2	0.90	Nkx6-2 Ensembl NCBI MGI UniProt
Hoxa13	0.90	Hoxa13 Ensembl NCBI MGI UniProt
Lhx3	0.90	Lhx3 Ensembl NCBI MGI UniProt
Obox1	0.90	Obox1 Ensembl NCBI MGI UniProt
Gbx1_Nobox_Alx3	0.90	Gbx1 Ensembl NCBI MGI UniProt Nobox Ensembl NCBI MGI UniProt Alx3 Ensembl NCBI MGI UniProt
Hoxb1	0.89	Hoxb1 Ensembl NCBI MGI UniProt
Barhl1	0.89	Barhl1 Ensembl NCBI MGI UniProt
Mecom	0.87	Mecom Ensembl NCBI MGI UniProt
Tbx2	0.87	Tbx2 Ensembl NCBI MGI UniProt
Hey2	0.87	Hey2 Ensembl NCBI MGI UniProt
Hes5_Hes7	0.86	Hes5 Ensembl NCBI MGI UniProt Hes7 Ensembl NCBI MGI UniProt
Zfp148	0.86	Zfp148 Ensembl NCBI MGI UniProt
Tcf4_Mesp1	0.85	Tcf4 Ensembl NCBI MGI UniProt Mesp1 Ensembl NCBI MGI UniProt
Sp2	0.85	Sp2 Ensembl NCBI MGI UniProt
Tbx3	0.85	Tbx3 Ensembl NCBI MGI UniProt
Egr1	0.85	Egr1 Ensembl NCBI MGI UniProt
Hsf1	0.84	Hsf1 Ensembl NCBI MGI UniProt
Creb3l2	0.84	Creb3l2 Ensembl NCBI MGI UniProt
Jun	0.83	Jun Ensembl NCBI MGI UniProt
Lhx5_Lmx1b_Lhx1	0.83	Lhx5 Ensembl NCBI MGI UniProt Lmx1b Ensembl NCBI MGI UniProt Lhx1 Ensembl NCBI MGI UniProt
Mga	0.83	Mga Ensembl NCBI MGI UniProt
Thra	0.83	Thra Ensembl NCBI MGI UniProt
En2	0.82	En2 Ensembl NCBI MGI UniProt
Myog_Tcf12	0.81	Myog Ensembl NCBI MGI UniProt Tcf12 Ensembl NCBI MGI UniProt
Ep300	0.80	Ep300 Ensembl NCBI MGI UniProt
Pou4f3	0.80	Pou4f3 Ensembl NCBI MGI UniProt
Foxb1	0.79	Foxb1 Ensembl NCBI MGI UniProt
Pknox2_Pknox1	0.79	Pknox2 Ensembl NCBI MGI UniProt Pknox1 Ensembl NCBI MGI UniProt
Nfat5	0.79	Nfat5 Ensembl NCBI MGI UniProt
Nkx1-1_Nkx1-2	0.79	Nkx1-1 Ensembl NCBI MGI UniProt Nkx1-2 Ensembl NCBI MGI UniProt
Myb	0.79	Myb Ensembl NCBI MGI UniProt
Nr5a2	0.79	Nr5a2 Ensembl NCBI MGI UniProt
Hey1_Myc_Mxi1	0.78	Hey1 Ensembl NCBI MGI UniProt Myc Ensembl NCBI MGI UniProt Mxi1 Ensembl NCBI MGI UniProt
Bbx	0.76	Bbx Ensembl NCBI MGI UniProt
Vsx1_Uncx_Prrx2_Shox2_Noto	0.76	Vsx1 Ensembl NCBI MGI UniProt Uncx Ensembl NCBI MGI UniProt Prrx2 Ensembl NCBI MGI UniProt Shox2 Ensembl NCBI MGI UniProt Noto Ensembl NCBI MGI UniProt
Gli1	0.76	Gli1 Ensembl NCBI MGI UniProt
Evx2	0.76	Evx2 Ensembl NCBI MGI UniProt
Foxf2	0.75	Foxf2 Ensembl NCBI MGI UniProt
E2f6	0.75	E2f6 Ensembl NCBI MGI UniProt
Nr3c2	0.75	Nr3c2 Ensembl NCBI MGI UniProt
Pax7	0.75	Pax7 Ensembl NCBI MGI UniProt
Vsx2_Dlx3	0.75	Vsx2 Ensembl NCBI MGI UniProt Dlx3 Ensembl NCBI MGI UniProt
Hoxc6	0.75	Hoxc6 Ensembl NCBI MGI UniProt
Meox1	0.74	Meox1 Ensembl NCBI MGI UniProt
Fos	0.74	Fos Ensembl NCBI MGI UniProt
Foxp2_Foxp3	0.74	Foxp2 Ensembl NCBI MGI UniProt Foxp3 Ensembl NCBI MGI UniProt
Klf13	0.73	Klf13 Ensembl NCBI MGI UniProt
Atf5	0.72	Atf5 Ensembl NCBI MGI UniProt
Zfp423	0.72	Zfp423 Ensembl NCBI MGI UniProt
Pax1_Pax9	0.72	Pax1 Ensembl NCBI MGI UniProt Pax9 Ensembl NCBI MGI UniProt
Gli2	0.71	Gli2 Ensembl NCBI MGI UniProt
Sox30	0.71	Sox30 Ensembl NCBI MGI UniProt
Gbx2	0.71	Gbx2 Ensembl NCBI MGI UniProt
Tfap2e	0.71	Tfap2e Ensembl NCBI MGI UniProt
Foxo4	0.71	Foxo4 Ensembl NCBI MGI UniProt
Tcf3	0.70	Tcf3 Ensembl NCBI MGI UniProt
Junb_Jund	0.70	Junb Ensembl NCBI MGI UniProt Jund Ensembl NCBI MGI UniProt
Zfp282	0.70	Zfp282 Ensembl NCBI MGI UniProt
Egr3	0.69	Egr3 Ensembl NCBI MGI UniProt
Cdc5l	0.68	Cdc5l Ensembl NCBI MGI UniProt
Neurod2_Bhlha15_Bhlhe22_Olig1	0.68	Neurod2 Ensembl NCBI MGI UniProt Bhlha15 Ensembl NCBI MGI UniProt Bhlhe22 Ensembl NCBI MGI UniProt Olig1 Ensembl NCBI MGI UniProt
Nfkb2	0.68	Nfkb2 Ensembl NCBI MGI UniProt
Hoxd1	0.68	Hoxd1 Ensembl NCBI MGI UniProt
Tbx20	0.68	Tbx20 Ensembl NCBI MGI UniProt
Atf6	0.67	Atf6 Ensembl NCBI MGI UniProt
Nkx2-6	0.67	Nkx2-6 Ensembl NCBI MGI UniProt
Nr4a2	0.67	Nr4a2 Ensembl NCBI MGI UniProt
Foxg1	0.67	Foxg1 Ensembl NCBI MGI UniProt
Zbtb49	0.67	Zbtb49 Ensembl NCBI MGI UniProt
Crem_Jdp2	0.66	Crem Ensembl NCBI MGI UniProt Jdp2 Ensembl NCBI MGI UniProt
Zfp410	0.66	Zfp410 Ensembl NCBI MGI UniProt
Cebpd	0.66	Cebpd Ensembl NCBI MGI UniProt
Rxrb	0.65	Rxrb Ensembl NCBI MGI UniProt
Clock	0.65	Clock Ensembl NCBI MGI UniProt
Pou3f3	0.64	Pou3f3 Ensembl NCBI MGI UniProt
Hmx3	0.63	Hmx3 Ensembl NCBI MGI UniProt
Nr6a1	0.63	Nr6a1 Ensembl NCBI MGI UniProt
Hmx1	0.62	Hmx1 Ensembl NCBI MGI UniProt
Thrb	0.62	Thrb Ensembl NCBI MGI UniProt
Hivep1	0.60	Hivep1 Ensembl NCBI MGI UniProt
Atf4	0.59	Atf4 Ensembl NCBI MGI UniProt
Hlx	0.59	Hlx Ensembl NCBI MGI UniProt
Nr2c1	0.59	Nr2c1 Ensembl NCBI MGI UniProt
Mnx1_Lhx6_Lmx1a	0.58	Mnx1 Ensembl NCBI MGI UniProt Lhx6 Ensembl NCBI MGI UniProt Lmx1a Ensembl NCBI MGI UniProt
Foxd1	0.58	Foxd1 Ensembl NCBI MGI UniProt
Klf3	0.58	Klf3 Ensembl NCBI MGI UniProt
Trp73	0.58	Trp73 Ensembl NCBI MGI UniProt
Scrt2	0.57	Scrt2 Ensembl NCBI MGI UniProt
Egr4	0.56	Egr4 Ensembl NCBI MGI UniProt
Glis3	0.56	Glis3 Ensembl NCBI MGI UniProt Glis3 Ensembl NCBI MGI UniProt
Ppard	0.55	Ppard Ensembl NCBI MGI UniProt
Foxo3	0.55	Foxo3 Ensembl NCBI MGI UniProt
Esrrg	0.54	Esrrg Ensembl NCBI MGI UniProt
Foxd3	0.54	Foxd3 Ensembl NCBI MGI UniProt
Hif1a	0.54	Hif1a Ensembl NCBI MGI UniProt
Rarb	0.52	Rarb Ensembl NCBI MGI UniProt
Myod1	0.52	Myod1 Ensembl NCBI MGI UniProt
Relb	0.51	Relb Ensembl NCBI MGI UniProt
Nr0b1	0.51	Nr0b1 Ensembl NCBI MGI UniProt
Etv6	0.50	Etv6 Ensembl NCBI MGI UniProt
Hoxd12	0.50	Hoxd12 Ensembl NCBI MGI UniProt
Batf3	0.50	Batf3 Ensembl NCBI MGI UniProt
Spdef	0.48	Spdef Ensembl NCBI MGI UniProt
Bhlhe40	0.48	Bhlhe40 Ensembl NCBI MGI UniProt
Atoh1_Bhlhe23	0.45	Atoh1 Ensembl NCBI MGI UniProt Bhlhe23 Ensembl NCBI MGI UniProt
Tbx1_Eomes	0.44	Tbx1 Ensembl NCBI MGI UniProt Eomes Ensembl NCBI MGI UniProt
E2f8	0.44	E2f8 Ensembl NCBI MGI UniProt
Phox2a	0.44	Phox2a Ensembl NCBI MGI UniProt
Etv4	0.44	Etv4 Ensembl NCBI MGI UniProt
Foxn1	0.43	Foxn1 Ensembl NCBI MGI UniProt
Hoxc10	0.43	Hoxc10 Ensembl NCBI MGI UniProt
Nfe2l1_Mafg	0.40	Nfe2l1 Ensembl NCBI MGI UniProt Mafg Ensembl NCBI MGI UniProt Mafg Ensembl NCBI MGI UniProt
Arid5a	0.40	Arid5a Ensembl NCBI MGI UniProt
Prdm4	0.37	Prdm4 Ensembl NCBI MGI UniProt
Hoxa3	0.36	Hoxa3 Ensembl NCBI MGI UniProt
Nr4a3	0.34	Nr4a3 Ensembl NCBI MGI UniProt
Cbfb	0.34	Cbfb Ensembl NCBI MGI UniProt
Gzf1	0.33	Gzf1 Ensembl NCBI MGI UniProt
Figla	0.31	Figla Ensembl NCBI MGI UniProt
Hoxb4	0.29	Hoxb4 Ensembl NCBI MGI UniProt
Trp63	0.29	Trp63 Ensembl NCBI MGI UniProt
Fosb	0.29	Fosb Ensembl NCBI MGI UniProt
Glis1	0.25	Glis1 Ensembl NCBI MGI UniProt
Sox5_Sry	0.25	Sox5 Ensembl NCBI MGI UniProt Sry Ensembl NCBI MGI UniProt
Tbx4	0.22	Tbx4 Ensembl NCBI MGI UniProt
Nfatc4	0.19	Nfatc4 Ensembl NCBI MGI UniProt
Arnt2	0.16	Arnt2 Ensembl NCBI MGI UniProt
Msx1_Lhx9_Barx1_Rax_Dlx6	0.03	Msx1 Ensembl NCBI MGI UniProt Lhx9 Ensembl NCBI MGI UniProt Barx1 Ensembl NCBI MGI UniProt Rax Ensembl NCBI MGI UniProt Dlx6 Ensembl NCBI MGI UniProt
Arnt	0.00	Arnt Ensembl NCBI MGI UniProt
Cdx2	0.00	Cdx2 Ensembl NCBI MGI UniProt
Foxl1	0.00	Foxl1 Ensembl NCBI MGI UniProt Foxl1 Ensembl NCBI MGI UniProt
Mzf1	0.00	Mzf1 Ensembl NCBI MGI UniProt
Hoxb7	0.00	Hoxb7 Ensembl NCBI MGI UniProt
Hoxa6	0.00	Hoxa6 Ensembl NCBI MGI UniProt
Pax2	0.00	Pax2 Ensembl NCBI MGI UniProt
Lef1	0.00	Lef1 Ensembl NCBI MGI UniProt
Pgr_Nr3c1	0.00	Pgr Ensembl NCBI MGI UniProt Nr3c1 Ensembl NCBI MGI UniProt
Sox15	0.00	Sox15 Ensembl NCBI MGI UniProt

List of samples with summary statistics on CRE signal intensities

Sample name	CRE number	Mean CRE signal intensity	Std. Dev. of signal intensity across CREs	Fraction of CRE signal intensity variance explained by motif activities
embryonicfacialprominence105	93907	0.850	1.3634	0.069
embryonicfacialprominence115	60650	0.622	1.3086	0.021
embryonicfacialprominence125	73117	0.640	1.1884	0.031
embryonicfacialprominence135	83761	0.728	1.3246	0.020
embryonicfacialprominence145	81622	0.566	1.4808	0.051
embryonicfacialprominence155	83156	0.671	1.2991	0.015
forebrain0	67987	0.528	1.3926	0.034
forebrain105	99282	0.809	1.4292	0.076
forebrain115	68078	0.649	1.4267	0.027
forebrain125	75114	0.642	1.2427	0.029
forebrain135	81119	0.649	1.2859	0.028
forebrain145	68176	0.590	1.4431	0.033
forebrain155	84572	0.515	1.3741	0.053
forebrain165	94460	0.534	1.5734	0.069
heart0	76881	0.507	1.3357	0.048
heart105	95810	0.860	1.2682	0.057
heart115	78616	0.695	1.3301	0.018
heart125	88355	0.587	1.2717	0.022
heart135	107643	0.723	1.4426	0.058
heart145	104131	0.478	1.4862	0.042
heart155	83368	0.649	1.3396	0.029
heart165	109943	0.679	1.4947	0.047
hindbrain0	67952	0.619	1.2178	0.041
hindbrain105	90846	0.842	1.3229	0.058
hindbrain115	62325	0.627	1.2967	0.022
hindbrain125	74952	0.647	1.2165	0.030
hindbrain135	83721	0.657	1.3541	0.032
hindbrain145	69876	0.452	1.4069	0.041
hindbrain155	83587	0.519	1.3405	0.049
hindbrain165	95770	0.603	1.5582	0.063
intestine0	64432	0.586	1.1864	0.035
intestine145	53332	0.588	1.3290	0.019
intestine155	73671	0.638	1.0854	0.087
intestine165	90711	0.695	1.3649	0.014
kidney0	62299	0.530	1.1656	0.038
kidney145	70207	0.684	1.2729	0.008
kidney155	89611	0.654	1.3592	0.027
kidney165	97755	0.648	1.4571	0.035
limb105	90146	0.750	1.3603	0.059
limb115	60402	0.648	1.2755	0.033
limb125	79146	0.691	1.3319	0.050
limb135	86094	0.705	1.4086	0.047
limb145	70831	0.642	1.3896	0.023
limb155	80521	0.645	1.3429	0.031
liver0	75712	0.629	1.2888	0.051
liver115	78092	0.742	1.3754	0.034
liver125	87591	0.591	1.3857	0.049
liver135	86224	0.649	1.3449	0.057
liver145	91529	0.529	1.3591	0.110
liver155	82336	0.607	1.2980	0.079
liver165	82115	0.618	1.5059	0.042
lung0	59461	0.547	1.1867	0.037
lung145	70990	0.687	1.3933	0.019
lung155	72292	0.579	1.2858	0.018
lung165	96460	0.618	1.5124	0.042
neuraltube115	62514	0.633	1.2903	0.024
neuraltube125	65483	0.576	1.0687	0.092
neuraltube135	85273	0.639	1.3639	0.032
neuraltube145	60917	0.565	1.3196	0.020
neuraltube155	81779	0.638	1.3179	0.026