Project
ENCODE: H3K4me3 ChIP-Seq of different mouse tissues during embryonic development
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CREMA identifies cis-regulatory elements genome-wide and models their activities across samples in terms of predicted transcription factor binding sites within them.

Regulatory motifs sorted by significance (z-value)

Motif name Z-value Associated genes Profile Logo
Irf2_Irf1_Irf8_Irf9_Irf7 10.67 small profile SeqLogo of Irf2_Irf1_Irf8_Irf9_Irf7
Rfx3_Rfx1_Rfx4 9.55 small profile SeqLogo of Rfx3_Rfx1_Rfx4
Zfx_Zfp711 9.14 small profile SeqLogo of Zfx_Zfp711
Rest 8.44 small profile SeqLogo of Rest
Tal1 8.40 small profile SeqLogo of Tal1
Mecp2 7.60 small profile SeqLogo of Mecp2
Wrnip1_Mta3_Rcor1 7.13 small profile SeqLogo of Wrnip1_Mta3_Rcor1
Gfi1_Gfi1b 7.00 small profile SeqLogo of Gfi1_Gfi1b
Mef2b 6.55 small profile SeqLogo of Mef2b
Nfic_Nfib 5.68 small profile SeqLogo of Nfic_Nfib
Ahr 5.66 small profile SeqLogo of Ahr
Smad1 5.48 small profile SeqLogo of Smad1
Runx2_Bcl11a 5.15 small profile SeqLogo of Runx2_Bcl11a
Elf1_Elf2_Etv2_Elf4 5.13 small profile SeqLogo of Elf1_Elf2_Etv2_Elf4
Foxj3_Tbl1xr1 4.97 small profile SeqLogo of Foxj3_Tbl1xr1
Tgif1_Meis3 4.89 small profile SeqLogo of Tgif1_Meis3
Sox14 4.82 small profile SeqLogo of Sox14
Spi1 4.64 small profile SeqLogo of Spi1
Tfdp1_Wt1_Egr2 4.63 small profile SeqLogo of Tfdp1_Wt1_Egr2
Hmga1 4.50 small profile SeqLogo of Hmga1
Etv1_Etv5_Gabpa 4.46 small profile SeqLogo of Etv1_Etv5_Gabpa
Zbtb18 4.45 small profile SeqLogo of Zbtb18
Hcfc1_Six5_Smarcc2_Zfp143 4.32 small profile SeqLogo of Hcfc1_Six5_Smarcc2_Zfp143
Pou1f1 4.30 small profile SeqLogo of Pou1f1
Gata5 4.26 small profile SeqLogo of Gata5
Esr2 4.22 small profile SeqLogo of Esr2
Nrf1 4.03 small profile SeqLogo of Nrf1
Zfp691 3.97 small profile SeqLogo of Zfp691
Rfx2_Rfx7 3.93 small profile SeqLogo of Rfx2_Rfx7
Hnf1b 3.87 small profile SeqLogo of Hnf1b
Gata3 3.84 small profile SeqLogo of Gata3
Yy1_Yy2 3.81 small profile SeqLogo of Yy1_Yy2
Sp100 3.80 small profile SeqLogo of Sp100
Snai1_Zeb1_Snai2 3.77 small profile SeqLogo of Snai1_Zeb1_Snai2
Zfp384 3.73 small profile SeqLogo of Zfp384
Hsfy2 3.72 small profile SeqLogo of Hsfy2
Hmbox1 3.68 small profile SeqLogo of Hmbox1
Hbp1 3.67 small profile SeqLogo of Hbp1
Mybl2 3.67 small profile SeqLogo of Mybl2
Chd1_Pml 3.66 small profile SeqLogo of Chd1_Pml
Foxc1 3.64 small profile SeqLogo of Foxc1
Zic2 3.60 small profile SeqLogo of Zic2
Hinfp 3.55 small profile SeqLogo of Hinfp
Irx6_Irx2_Irx3 3.53 small profile SeqLogo of Irx6_Irx2_Irx3
Ebf1 3.53 small profile SeqLogo of Ebf1
Smarcc1_Fosl1 3.53 small profile SeqLogo of Smarcc1_Fosl1
Gata4 3.49 small profile SeqLogo of Gata4
Pou2f3 3.35 small profile SeqLogo of Pou2f3
Hnf4g 3.26 small profile SeqLogo of Hnf4g
Nhlh1 3.26 small profile SeqLogo of Nhlh1
Hmga2 3.25 small profile SeqLogo of Hmga2
Pax6 3.23 small profile SeqLogo of Pax6
Plag1 3.22 small profile SeqLogo of Plag1
Arid5b 3.16 small profile SeqLogo of Arid5b
Nfia 3.14 small profile SeqLogo of Nfia
Maz_Zfp281 3.11 small profile SeqLogo of Maz_Zfp281
Hoxa5 3.07 small profile SeqLogo of Hoxa5
Tead3_Tead4 3.06 small profile SeqLogo of Tead3_Tead4
Isl1 3.05 small profile SeqLogo of Isl1
Sox2 3.03 small profile SeqLogo of Sox2
Klf12_Klf14_Sp4 3.03 small profile SeqLogo of Klf12_Klf14_Sp4
Spic 3.01 small profile SeqLogo of Spic
Hic2 3.00 small profile SeqLogo of Hic2
Prdm1 3.00 small profile SeqLogo of Prdm1
Ybx1_Nfya_Nfyb_Nfyc_Cebpz 2.96 small profile SeqLogo of Ybx1_Nfya_Nfyb_Nfyc_Cebpz
Rad21_Smc3 2.93 small profile SeqLogo of Rad21_Smc3
Irf4 2.93 small profile SeqLogo of Irf4
Pou5f1 2.92 small profile SeqLogo of Pou5f1
Pparg_Rxrg 2.90 small profile SeqLogo of Pparg_Rxrg
Klf4_Sp3 2.89 small profile SeqLogo of Klf4_Sp3
Scrt1 2.88 small profile SeqLogo of Scrt1
Sp1 2.84 small profile SeqLogo of Sp1
Cxxc1 2.84 small profile SeqLogo of Cxxc1
Ubp1 2.83 small profile SeqLogo of Ubp1
Cux1 2.82 small profile SeqLogo of Cux1
Gcm2 2.82 small profile SeqLogo of Gcm2
Homez 2.80 small profile SeqLogo of Homez
Epas1_Bcl3 2.80 small profile SeqLogo of Epas1_Bcl3
Gata2_Gata1 2.79 small profile SeqLogo of Gata2_Gata1
Hdx 2.79 small profile SeqLogo of Hdx
E2f3 2.77 small profile SeqLogo of E2f3
Taf1 2.72 small profile SeqLogo of Taf1
Pou4f1_Pou6f1 2.72 small profile SeqLogo of Pou4f1_Pou6f1
Tlx2 2.70 small profile SeqLogo of Tlx2
Klf1 2.69 small profile SeqLogo of Klf1
Zbtb33_Chd2 2.67 small profile SeqLogo of Zbtb33_Chd2
Bptf 2.66 small profile SeqLogo of Bptf
Mef2c 2.64 small profile SeqLogo of Mef2c
Hic1 2.62 small profile SeqLogo of Hic1
Hsf2 2.53 small profile SeqLogo of Hsf2
Klf7 2.52 small profile SeqLogo of Klf7
Hoxb13 2.51 small profile SeqLogo of Hoxb13
Hnf4a 2.51 small profile SeqLogo of Hnf4a
Tfeb_Usf1_Srebf1_Usf2_Bhlhe41_Srebf2 2.50 small profile SeqLogo of Tfeb_Usf1_Srebf1_Usf2_Bhlhe41_Srebf2
Klf16_Sp8 2.49 small profile SeqLogo of Klf16_Sp8
Hsf4 2.49 small profile SeqLogo of Hsf4
Hoxa10 2.47 small profile SeqLogo of Hoxa10
Arntl_Tfe3_Mlx_Mitf_Mlxipl_Tfec 2.47 small profile SeqLogo of Arntl_Tfe3_Mlx_Mitf_Mlxipl_Tfec
Nfatc2 2.41 small profile SeqLogo of Nfatc2
Hoxc9 2.40 small profile SeqLogo of Hoxc9
Hand1 2.39 small profile SeqLogo of Hand1
Zbtb7a 2.37 small profile SeqLogo of Zbtb7a
E2f1 2.36 small profile SeqLogo of E2f1
Irx5 2.32 small profile SeqLogo of Irx5
Cebpe 2.32 small profile SeqLogo of Cebpe
Zfp524 2.31 small profile SeqLogo of Zfp524
Zbtb14 2.31 small profile SeqLogo of Zbtb14
Rreb1 2.28 small profile SeqLogo of Rreb1
Atf3 2.27 small profile SeqLogo of Atf3
Pitx3 2.27 small profile SeqLogo of Pitx3
Foxa2_Foxa1 2.26 small profile SeqLogo of Foxa2_Foxa1
Dlx5_Dlx4 2.25 small profile SeqLogo of Dlx5_Dlx4
Hoxa11_Hoxc12 2.25 small profile SeqLogo of Hoxa11_Hoxc12
Ddit3 2.24 small profile SeqLogo of Ddit3
Zbtb3 2.23 small profile SeqLogo of Zbtb3
Mybl1 2.20 small profile SeqLogo of Mybl1
Tead1 2.20 small profile SeqLogo of Tead1
E2f7 2.18 small profile SeqLogo of E2f7
Tfcp2 2.16 small profile SeqLogo of Tfcp2
Hlf 2.15 small profile SeqLogo of Hlf
Srf 2.11 small profile SeqLogo of Srf
Myf6 2.11 small profile SeqLogo of Myf6
Hoxa2 2.10 small profile SeqLogo of Hoxa2
Nkx2-2 2.10 small profile SeqLogo of Nkx2-2
Id4 2.09 small profile SeqLogo of Id4
Tbp 2.07 small profile SeqLogo of Tbp
Ar 2.07 small profile SeqLogo of Ar
Nkx2-4 2.07 small profile SeqLogo of Nkx2-4
Tfap2a 2.05 small profile SeqLogo of Tfap2a
Pou3f4 2.04 small profile SeqLogo of Pou3f4
Olig2_Olig3 2.01 small profile SeqLogo of Olig2_Olig3
Stat5a 2.00 small profile SeqLogo of Stat5a
Hnf1a 1.98 small profile SeqLogo of Hnf1a
Aire 1.97 small profile SeqLogo of Aire
Sox3_Sox10 1.96 small profile SeqLogo of Sox3_Sox10
Glis2 1.94 small profile SeqLogo of Glis2
Cenpb 1.94 small profile SeqLogo of Cenpb
Gtf2i_Gtf2f1 1.94 small profile SeqLogo of Gtf2i_Gtf2f1
Hoxa1 1.93 small profile SeqLogo of Hoxa1
Pbx2 1.91 small profile SeqLogo of Pbx2
Nr2f2 1.89 small profile SeqLogo of Nr2f2
Zfp110 1.89 small profile SeqLogo of Zfp110
Nfe2_Bach1_Mafk 1.89 small profile SeqLogo of Nfe2_Bach1_Mafk
Hes1 1.87 small profile SeqLogo of Hes1
Cebpb 1.86 small profile SeqLogo of Cebpb
Sox8 1.85 small profile SeqLogo of Sox8
Rorc_Nr1d1 1.83 small profile SeqLogo of Rorc_Nr1d1
Pou2f1 1.82 small profile SeqLogo of Pou2f1
Sox6_Sox9 1.81 small profile SeqLogo of Sox6_Sox9
Klf6_Patz1 1.80 small profile SeqLogo of Klf6_Patz1
Pbx1_Pbx3 1.80 small profile SeqLogo of Pbx1_Pbx3
Foxk1_Foxj1 1.79 small profile SeqLogo of Foxk1_Foxj1
Sox18_Sox12 1.78 small profile SeqLogo of Sox18_Sox12
Hoxd10 1.78 small profile SeqLogo of Hoxd10
Atf7_E4f1 1.77 small profile SeqLogo of Atf7_E4f1
Dbp 1.77 small profile SeqLogo of Dbp
Zbtb7b 1.77 small profile SeqLogo of Zbtb7b
Pitx2_Otx2 1.76 small profile SeqLogo of Pitx2_Otx2
Rarg 1.76 small profile SeqLogo of Rarg
Gsx1_Alx1_Mixl1_Lbx2 1.75 small profile SeqLogo of Gsx1_Alx1_Mixl1_Lbx2
Atf1_Creb5 1.75 small profile SeqLogo of Atf1_Creb5
Gmeb2 1.72 small profile SeqLogo of Gmeb2
Tcf7_Tcf7l2 1.72 small profile SeqLogo of Tcf7_Tcf7l2
Elf5 1.71 small profile SeqLogo of Elf5
Irf5_Irf6 1.71 small profile SeqLogo of Irf5_Irf6
Spib 1.70 small profile SeqLogo of Spib
Mef2d_Mef2a 1.70 small profile SeqLogo of Mef2d_Mef2a
E2f2_E2f5 1.69 small profile SeqLogo of E2f2_E2f5
Irf3 1.69 small profile SeqLogo of Irf3
Nfix 1.68 small profile SeqLogo of Nfix
Zfp219_Zfp740 1.68 small profile SeqLogo of Zfp219_Zfp740
Zbtb12 1.68 small profile SeqLogo of Zbtb12
Rhox11 1.68 small profile SeqLogo of Rhox11
Lhx8 1.68 small profile SeqLogo of Lhx8
Hoxd9 1.67 small profile SeqLogo of Hoxd9
Nr1i2 1.67 small profile SeqLogo of Nr1i2
Twist1 1.66 small profile SeqLogo of Twist1
Osr2_Osr1 1.65 small profile SeqLogo of Osr2_Osr1
Hoxc13_Hoxd13 1.65 small profile SeqLogo of Hoxc13_Hoxd13
Alx4 1.65 small profile SeqLogo of Alx4
Six6 1.64 small profile SeqLogo of Six6
Max_Mycn 1.64 small profile SeqLogo of Max_Mycn
Otx1 1.64 small profile SeqLogo of Otx1
Tbx15 1.62 small profile SeqLogo of Tbx15
Nfil3_Tef 1.62 small profile SeqLogo of Nfil3_Tef
Obox6_Obox5 1.62 small profile SeqLogo of Obox6_Obox5
Stat2 1.62 small profile SeqLogo of Stat2
Meox2 1.61 small profile SeqLogo of Meox2
Zfp784 1.60 small profile SeqLogo of Zfp784
Esr1 1.58 small profile SeqLogo of Esr1
Mafa 1.58 small profile SeqLogo of Mafa
Nr1i3 1.58 small profile SeqLogo of Nr1i3
Tcf21_Msc 1.57 small profile SeqLogo of Tcf21_Msc
Rxra 1.57 small profile SeqLogo of Rxra
Elf3 1.56 small profile SeqLogo of Elf3
Nkx3-1 1.56 small profile SeqLogo of Nkx3-1
Foxp1_Foxj2 1.56 small profile SeqLogo of Foxp1_Foxj2
Ets1 1.55 small profile SeqLogo of Ets1
Pou2f2_Pou3f1 1.55 small profile SeqLogo of Pou2f2_Pou3f1
Nr2e3 1.54 small profile SeqLogo of Nr2e3
Hoxb8_Pdx1 1.54 small profile SeqLogo of Hoxb8_Pdx1
Klf8 1.53 small profile SeqLogo of Klf8
Rela_Rel_Nfkb1 1.53 small profile SeqLogo of Rela_Rel_Nfkb1
Batf 1.53 small profile SeqLogo of Batf
Foxi1_Foxo1 1.53 small profile SeqLogo of Foxi1_Foxo1
Nanog 1.52 small profile SeqLogo of Nanog
Nfatc1 1.51 small profile SeqLogo of Nfatc1
Brca1 1.51 small profile SeqLogo of Brca1
Erg 1.51 small profile SeqLogo of Erg
Tfap4 1.51 small profile SeqLogo of Tfap4
Plagl1 1.51 small profile SeqLogo of Plagl1
Foxd2 1.51 small profile SeqLogo of Foxd2
Pax5 1.51 small profile SeqLogo of Pax5
Ctcfl_Ctcf 1.50 small profile SeqLogo of Ctcfl_Ctcf
Esrrb_Esrra 1.49 small profile SeqLogo of Esrrb_Esrra
Zbtb16 1.49 small profile SeqLogo of Zbtb16
Msx2_Hoxd4 1.49 small profile SeqLogo of Msx2_Hoxd4
En1 1.48 small profile SeqLogo of En1
Dmc1 1.48 small profile SeqLogo of Dmc1
Grhl1 1.47 small profile SeqLogo of Grhl1
Gmeb1 1.47 small profile SeqLogo of Gmeb1
Neurod1 1.46 small profile SeqLogo of Neurod1
Zkscan1 1.46 small profile SeqLogo of Zkscan1
Nkx3-2 1.46 small profile SeqLogo of Nkx3-2
Trp53 1.46 small profile SeqLogo of Trp53
Zbtb6 1.45 small profile SeqLogo of Zbtb6
Bcl6b 1.45 small profile SeqLogo of Bcl6b
Vdr 1.44 small profile SeqLogo of Vdr
Rara 1.44 small profile SeqLogo of Rara
Klf15 1.44 small profile SeqLogo of Klf15
Sox21 1.42 small profile SeqLogo of Sox21
Smad3 1.42 small profile SeqLogo of Smad3
Zbtb4 1.41 small profile SeqLogo of Zbtb4
Meis1 1.41 small profile SeqLogo of Meis1
Tfap2b 1.40 small profile SeqLogo of Tfap2b
Pou6f2_Pou4f2 1.39 small profile SeqLogo of Pou6f2_Pou4f2
Pax3 1.38 small profile SeqLogo of Pax3
Tbr1 1.37 small profile SeqLogo of Tbr1
Sox17 1.36 small profile SeqLogo of Sox17
Nkx2-5 1.35 small profile SeqLogo of Nkx2-5
Creb1 1.35 small profile SeqLogo of Creb1
Nfatc3 1.35 small profile SeqLogo of Nfatc3
Zkscan3 1.35 small profile SeqLogo of Zkscan3
Emx1_Emx2 1.34 small profile SeqLogo of Emx1_Emx2
Maf_Nrl 1.34 small profile SeqLogo of Maf_Nrl
E2f4 1.33 small profile SeqLogo of E2f4
Tcf7l1 1.33 small profile SeqLogo of Tcf7l1
Nkx2-9 1.33 small profile SeqLogo of Nkx2-9
Fosl2_Bach2 1.32 small profile SeqLogo of Fosl2_Bach2
Zfp263 1.32 small profile SeqLogo of Zfp263
Onecut1_Cux2 1.31 small profile SeqLogo of Onecut1_Cux2
Foxm1 1.31 small profile SeqLogo of Foxm1
Nkx2-1 1.31 small profile SeqLogo of Nkx2-1
Six4 1.31 small profile SeqLogo of Six4
Etv3_Erf_Fev_Elk4_Elk1_Elk3 1.31 small profile SeqLogo of Etv3_Erf_Fev_Elk4_Elk1_Elk3
Nkx6-1_Evx1_Hesx1 1.30 small profile SeqLogo of Nkx6-1_Evx1_Hesx1
Pou3f2 1.30 small profile SeqLogo of Pou3f2
Onecut2_Onecut3 1.29 small profile SeqLogo of Onecut2_Onecut3
Pax8 1.28 small profile SeqLogo of Pax8
Hoxa9_Hoxb9 1.28 small profile SeqLogo of Hoxa9_Hoxb9
Sox11 1.28 small profile SeqLogo of Sox11
Foxc2 1.27 small profile SeqLogo of Foxc2
Foxf1 1.27 small profile SeqLogo of Foxf1
Crx_Gsc 1.27 small profile SeqLogo of Crx_Gsc
Nkx2-3 1.27 small profile SeqLogo of Nkx2-3
Zfp652 1.27 small profile SeqLogo of Zfp652
Smad4 1.27 small profile SeqLogo of Smad4
Tbx5 1.26 small profile SeqLogo of Tbx5
Ehf 1.26 small profile SeqLogo of Ehf
Arid3a 1.25 small profile SeqLogo of Arid3a
Hoxb2_Dlx2 1.25 small profile SeqLogo of Hoxb2_Dlx2
Rbpj 1.24 small profile SeqLogo of Rbpj
Isl2 1.24 small profile SeqLogo of Isl2
Maff 1.24 small profile SeqLogo of Maff
Ets2 1.23 small profile SeqLogo of Ets2
Ppara 1.23 small profile SeqLogo of Ppara
Hoxb5 1.23 small profile SeqLogo of Hoxb5
Pax4 1.22 small profile SeqLogo of Pax4
Hmx2 1.22 small profile SeqLogo of Hmx2
Fli1 1.22 small profile SeqLogo of Fli1
Cpeb1 1.22 small profile SeqLogo of Cpeb1
Rfx5 1.22 small profile SeqLogo of Rfx5
Pitx1 1.22 small profile SeqLogo of Pitx1
Barhl2 1.21 small profile SeqLogo of Barhl2
Fubp1 1.21 small profile SeqLogo of Fubp1
Rora 1.21 small profile SeqLogo of Rora
Dlx1 1.20 small profile SeqLogo of Dlx1
Nr1h4 1.19 small profile SeqLogo of Nr1h4
Foxq1 1.19