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ENCSR904DTN: DNase-seq of mouse liver in constant darkness
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CREMA identifies cis-regulatory elements genome-wide and models their activities across samples in terms of predicted transcription factor binding sites within them.

Regulatory motifs sorted by significance (z-value)

Motif name Z-value Associated genes Profile Logo
Nfil3_Tef 34.90 small profile SeqLogo of Nfil3_Tef
Stat5a 23.85 small profile SeqLogo of Stat5a
Hnf1b 20.35 small profile SeqLogo of Hnf1b
Nfia 19.36 small profile SeqLogo of Nfia
Egr1 18.82 small profile SeqLogo of Egr1
Arntl_Tfe3_Mlx_Mitf_Mlxipl_Tfec 17.79 small profile SeqLogo of Arntl_Tfe3_Mlx_Mitf_Mlxipl_Tfec
Hnf4g 17.58 small profile SeqLogo of Hnf4g
Ybx1_Nfya_Nfyb_Nfyc_Cebpz 17.44 small profile SeqLogo of Ybx1_Nfya_Nfyb_Nfyc_Cebpz
Hnf4a 17.05 small profile SeqLogo of Hnf4a
Tfdp1_Wt1_Egr2 12.97 small profile SeqLogo of Tfdp1_Wt1_Egr2
Hcfc1_Six5_Smarcc2_Zfp143 12.94 small profile SeqLogo of Hcfc1_Six5_Smarcc2_Zfp143
Foxj3_Tbl1xr1 12.17 small profile SeqLogo of Foxj3_Tbl1xr1
Pou1f1 12.05 small profile SeqLogo of Pou1f1
Gata3 11.28 small profile SeqLogo of Gata3
Nfic_Nfib 11.01 small profile SeqLogo of Nfic_Nfib
Esr2 10.71 small profile SeqLogo of Esr2
Foxi1_Foxo1 10.03 small profile SeqLogo of Foxi1_Foxo1
Pparg_Rxrg 9.98 small profile SeqLogo of Pparg_Rxrg
Nrf1 9.97 small profile SeqLogo of Nrf1
Mecp2 9.91 small profile SeqLogo of Mecp2
Elf1_Elf2_Etv2_Elf4 9.65 small profile SeqLogo of Elf1_Elf2_Etv2_Elf4
Cebpb 9.47 small profile SeqLogo of Cebpb
Rorc_Nr1d1 9.41 small profile SeqLogo of Rorc_Nr1d1
Foxp1_Foxj2 9.39 small profile SeqLogo of Foxp1_Foxj2
Irx6_Irx2_Irx3 9.10 small profile SeqLogo of Irx6_Irx2_Irx3
Nr2f6 9.06 small profile SeqLogo of Nr2f6
Isl1 8.61 small profile SeqLogo of Isl1
Tfeb_Usf1_Srebf1_Usf2_Bhlhe41_Srebf2 8.58 small profile SeqLogo of Tfeb_Usf1_Srebf1_Usf2_Bhlhe41_Srebf2
Stat4_Stat3_Stat5b 8.29 small profile SeqLogo of Stat4_Stat3_Stat5b
Zfx_Zfp711 8.27 small profile SeqLogo of Zfx_Zfp711
Mnt 8.15 small profile SeqLogo of Mnt
Spic 8.14 small profile SeqLogo of Spic
Etv1_Etv5_Gabpa 8.14 small profile SeqLogo of Etv1_Etv5_Gabpa
Egr3 7.94 small profile SeqLogo of Egr3
Ar 7.89 small profile SeqLogo of Ar
Wrnip1_Mta3_Rcor1 7.87 small profile SeqLogo of Wrnip1_Mta3_Rcor1
Ctcfl_Ctcf 7.84 small profile SeqLogo of Ctcfl_Ctcf
Tbp 7.80 small profile SeqLogo of Tbp
Foxc1 7.45 small profile SeqLogo of Foxc1
Zbtb33_Chd2 7.42 small profile SeqLogo of Zbtb33_Chd2
Hbp1 7.39 small profile SeqLogo of Hbp1
Bptf 7.37 small profile SeqLogo of Bptf
Irf2_Irf1_Irf8_Irf9_Irf7 7.33 small profile SeqLogo of Irf2_Irf1_Irf8_Irf9_Irf7
Hoxa5 7.30 small profile SeqLogo of Hoxa5
Hsf2 7.13 small profile SeqLogo of Hsf2
Nr1h2 7.10 small profile SeqLogo of Nr1h2
Nr1h4 6.89 small profile SeqLogo of Nr1h4
Rarg 6.88 small profile SeqLogo of Rarg
Sp1 6.80 small profile SeqLogo of Sp1
Onecut1_Cux2 6.78 small profile SeqLogo of Onecut1_Cux2
Olig2_Olig3 6.60 small profile SeqLogo of Olig2_Olig3
Tcf7_Tcf7l2 6.45 small profile SeqLogo of Tcf7_Tcf7l2
Cebpe 6.35 small profile SeqLogo of Cebpe
Zbtb7b 6.35 small profile SeqLogo of Zbtb7b
Nr3c2 6.34 small profile SeqLogo of Nr3c2
Chd1_Pml 6.34 small profile SeqLogo of Chd1_Pml
Tbr1 6.32 small profile SeqLogo of Tbr1
Foxa2_Foxa1 6.23 small profile SeqLogo of Foxa2_Foxa1
Dmc1 6.12 small profile SeqLogo of Dmc1
Nfatc1 6.09 small profile SeqLogo of Nfatc1
Snai1_Zeb1_Snai2 6.05 small profile SeqLogo of Snai1_Zeb1_Snai2
Foxp2_Foxp3 6.04 small profile SeqLogo of Foxp2_Foxp3
Klf6_Patz1 5.99 small profile SeqLogo of Klf6_Patz1
Pou2f3 5.96 small profile SeqLogo of Pou2f3
Etv3_Erf_Fev_Elk4_Elk1_Elk3 5.94 small profile SeqLogo of Etv3_Erf_Fev_Elk4_Elk1_Elk3
Spib 5.92 small profile SeqLogo of Spib
Cebpa_Cebpg 5.79 small profile SeqLogo of Cebpa_Cebpg
Klf16_Sp8 5.70 small profile SeqLogo of Klf16_Sp8
Yy1_Yy2 5.63 small profile SeqLogo of Yy1_Yy2
Plagl1 5.62 small profile SeqLogo of Plagl1
Zfp524 5.61 small profile SeqLogo of Zfp524
Rora 5.59 small profile SeqLogo of Rora
Fosl2_Bach2 5.58 small profile SeqLogo of Fosl2_Bach2
Irx5 5.52 small profile SeqLogo of Irx5
Hmga1 5.50 small profile SeqLogo of Hmga1
Hic1 5.50 small profile SeqLogo of Hic1
Klf4_Sp3 5.33 small profile SeqLogo of Klf4_Sp3
Klf8 5.31 small profile SeqLogo of Klf8
Maz_Zfp281 5.30 small profile SeqLogo of Maz_Zfp281
Stat6 5.25 small profile SeqLogo of Stat6
Nkx2-9 5.25 small profile SeqLogo of Nkx2-9
Atf3 5.24 small profile SeqLogo of Atf3
Nkx2-2 5.24 small profile SeqLogo of Nkx2-2
Tgif1_Meis3 5.17 small profile SeqLogo of Tgif1_Meis3
Ubp1 5.17 small profile SeqLogo of Ubp1
En1 5.07 small profile SeqLogo of En1
Ebf1 5.06 small profile SeqLogo of Ebf1
Homez 5.05 small profile SeqLogo of Homez
Atf4 5.02 small profile SeqLogo of Atf4
Rad21_Smc3 5.02 small profile SeqLogo of Rad21_Smc3
Isl2 5.00 small profile SeqLogo of Isl2
Hnf1a 4.92 small profile SeqLogo of Hnf1a
Ddit3 4.89 small profile SeqLogo of Ddit3
Glis2 4.89 small profile SeqLogo of Glis2
Nkx2-4 4.88 small profile SeqLogo of Nkx2-4
Prox1 4.88 small profile SeqLogo of Prox1
Rhox11 4.82 small profile SeqLogo of Rhox11
E2f3 4.75 small profile SeqLogo of E2f3
Rfx3_Rfx1_Rfx4 4.74 small profile SeqLogo of Rfx3_Rfx1_Rfx4
Ets1 4.74 small profile SeqLogo of Ets1
Plag1 4.72 small profile SeqLogo of Plag1
Nr2f1_Nr4a1 4.70 small profile SeqLogo of Nr2f1_Nr4a1
Hoxa13 4.70 small profile SeqLogo of Hoxa13
Sox21 4.66 small profile SeqLogo of Sox21
Neurod1 4.64 small profile SeqLogo of Neurod1
Mafb 4.61 small profile SeqLogo of Mafb
Foxa3 4.57 small profile SeqLogo of Foxa3
Foxc2 4.56 small profile SeqLogo of Foxc2
Onecut2_Onecut3 4.54 small profile SeqLogo of Onecut2_Onecut3
Epas1_Bcl3 4.53 small profile SeqLogo of Epas1_Bcl3
Arid5b 4.48 small profile SeqLogo of Arid5b
Hic2 4.47 small profile SeqLogo of Hic2
Foxm1 4.45 small profile SeqLogo of Foxm1
Rxra 4.37 small profile SeqLogo of Rxra
Tcf7l1 4.31 small profile SeqLogo of Tcf7l1
Nr2e3 4.30 small profile SeqLogo of Nr2e3
Max_Mycn 4.28 small profile SeqLogo of Max_Mycn
Nkx3-1 4.28 small profile SeqLogo of Nkx3-1
Junb_Jund 4.27 small profile SeqLogo of Junb_Jund
Hmbox1 4.25 small profile SeqLogo of Hmbox1
Klf12_Klf14_Sp4 4.25 small profile SeqLogo of Klf12_Klf14_Sp4
Nhlh1 4.21 small profile SeqLogo of Nhlh1
Bcl6b 4.21 small profile SeqLogo of Bcl6b
Foxf1 4.19 small profile SeqLogo of Foxf1
Nr2c2 4.16 small profile SeqLogo of Nr2c2
Zkscan1 4.13 small profile SeqLogo of Zkscan1
Spi1 4.11 small profile SeqLogo of Spi1
Gcm2 4.07 small profile SeqLogo of Gcm2
Hey1_Myc_Mxi1 4.06 small profile SeqLogo of Hey1_Myc_Mxi1
Six6 4.02 small profile SeqLogo of Six6
Ppard 4.00 small profile SeqLogo of Ppard
Foxq1 3.96 small profile SeqLogo of Foxq1
Nr1i2 3.95 small profile SeqLogo of Nr1i2
Dbp 3.89 small profile SeqLogo of Dbp
Zbtb12 3.89 small profile SeqLogo of Zbtb12
Foxd2 3.88 small profile SeqLogo of Foxd2
Stat1 3.84 small profile SeqLogo of Stat1
Erg 3.78 small profile SeqLogo of Erg
Gata4 3.76 small profile SeqLogo of Gata4
Gata2_Gata1 3.71 small profile SeqLogo of Gata2_Gata1
Zfp784 3.66 small profile SeqLogo of Zfp784
Hoxa10 3.63 small profile SeqLogo of Hoxa10
Taf1 3.63 small profile SeqLogo of Taf1
Maf_Nrl 3.59 small profile SeqLogo of Maf_Nrl
Ahr 3.57 small profile SeqLogo of Ahr
Tal1 3.55 small profile SeqLogo of Tal1
Hmga2 3.54 small profile SeqLogo of Hmga2
Sox3_Sox10 3.53 small profile SeqLogo of Sox3_Sox10
Atf6 3.52 small profile SeqLogo of Atf6
Atf1_Creb5 3.51 small profile SeqLogo of Atf1_Creb5
Hlf 3.48 small profile SeqLogo of Hlf
Pou3f2 3.48 small profile SeqLogo of Pou3f2
Hes1 3.46 small profile SeqLogo of Hes1
Zfp263 3.43 small profile SeqLogo of Zfp263
Rela_Rel_Nfkb1 3.38 small profile SeqLogo of Rela_Rel_Nfkb1
Klf7 3.36 small profile SeqLogo of Klf7
Twist1 3.35 small profile SeqLogo of Twist1
Tead3_Tead4 3.34 small profile SeqLogo of Tead3_Tead4
Meis1 3.33 small profile SeqLogo of Meis1
Mef2c 3.31 small profile SeqLogo of Mef2c
Nfatc2 3.27 small profile SeqLogo of Nfatc2
Prdm14 3.26 small profile SeqLogo of Prdm14
Pou5f1 3.22 small profile SeqLogo of Pou5f1
Tlx2 3.18 small profile SeqLogo of Tlx2
Esrrb_Esrra 3.16 small profile SeqLogo of Esrrb_Esrra
Bcl6 3.14 small profile SeqLogo of Bcl6
Zic2 3.13 small profile SeqLogo of Zic2
Hoxd9 3.12 small profile SeqLogo of Hoxd9
Tfap4 3.05 small profile SeqLogo of Tfap4
Zkscan3 3.04 small profile SeqLogo of Zkscan3
Jun 3.01 small profile SeqLogo of Jun
Msx2_Hoxd4 3.00 small profile SeqLogo of Msx2_Hoxd4
Nkx2-3 2.99 small profile SeqLogo of Nkx2-3
Cebpd 2.99 small profile SeqLogo of Cebpd
Klf1 2.98 small profile SeqLogo of Klf1
Atf5 2.98 small profile SeqLogo of Atf5
Fubp1 2.98 small profile SeqLogo of Fubp1
Rfx2_Rfx7 2.97 small profile SeqLogo of Rfx2_Rfx7
Nkx3-2 2.97 small profile SeqLogo of Nkx3-2
Zfp219_Zfp740 2.96 small profile SeqLogo of Zfp219_Zfp740
Hoxa2 2.95 small profile SeqLogo of Hoxa2
Hsfy2 2.95 small profile SeqLogo of Hsfy2
Creb1 2.94 small profile SeqLogo of Creb1
Hdx 2.92 small profile SeqLogo of Hdx
Nr2f2 2.90 small profile SeqLogo of Nr2f2
Rest 2.88 small profile SeqLogo of Rest
Maff 2.87 small profile SeqLogo of Maff
Runx2_Bcl11a 2.85 small profile SeqLogo of Runx2_Bcl11a
Nfat5 2.85 small profile SeqLogo of Nfat5
Cxxc1 2.85 small profile SeqLogo of Cxxc1
Pitx3 2.84 small profile SeqLogo of Pitx3
Gata5 2.83 small profile SeqLogo of Gata5
Zfp128 2.79 small profile SeqLogo of Zfp128
Fos 2.79 small profile SeqLogo of Fos
Pitx1 2.76 small profile SeqLogo of Pitx1
Sox11 2.75 small profile SeqLogo of Sox11
Sox2 2.74 small profile SeqLogo of Sox2
Sox18_Sox12 2.73 small profile SeqLogo of Sox18_Sox12
Tlx1 2.72 small profile SeqLogo of Tlx1
Zbtb7a 2.71 small profile SeqLogo of Zbtb7a
Pou2f2_Pou3f1 2.68 small profile SeqLogo of Pou2f2_Pou3f1
Nfe2_Bach1_Mafk 2.67 small profile SeqLogo of Nfe2_Bach1_Mafk
Lhx2_Hoxc5 2.66 small profile SeqLogo of Lhx2_Hoxc5
Pbx2 2.65 small profile SeqLogo of Pbx2
Nr0b1 2.65 small profile SeqLogo of Nr0b1
Nkx2-1 2.64 small profile SeqLogo of Nkx2-1
Hes5_Hes7 2.64 small profile SeqLogo of Hes5_Hes7
Pbx1_Pbx3 2.64 small profile SeqLogo of Pbx1_Pbx3
Foxk1_Foxj1 2.61 small profile SeqLogo of Foxk1_Foxj1
Tbx3 2.60 small profile SeqLogo of Tbx3
Irf3 2.60 small profile SeqLogo of Irf3
Ehf 2.58 small profile SeqLogo of Ehf
Rhox4e_Rhox6_Vax2 2.56 small profile SeqLogo of Rhox4e_Rhox6_Vax2
Irf4 2.55 small profile SeqLogo of Irf4
Elf5 2.55 small profile SeqLogo of Elf5
Pitx2_Otx2 2.50 small profile SeqLogo of Pitx2_Otx2
Zfp652 2.50 small profile SeqLogo of Zfp652
Pou2f1 2.49 small profile SeqLogo of Pou2f1
Mtf1 2.49 small profile SeqLogo of Mtf1
Sin3a 2.49 small profile SeqLogo of Sin3a
Crem_Jdp2 2.47 small profile SeqLogo of Crem_Jdp2
Creb3l2 2.46 small profile SeqLogo of Creb3l2
Zbtb14 2.45 small profile SeqLogo of Zbtb14
Myb 2.45 small profile SeqLogo of Myb
Aire 2.45 small profile SeqLogo of Aire
Pou4f1_Pou6f1 2.44 small profile SeqLogo of Pou4f1_Pou6f1
Hinfp 2.43 small profile SeqLogo of Hinfp
Neurog2 2.40 small profile SeqLogo of Neurog2
Gli2 2.39 small profile SeqLogo of Gli2
Esrrg 2.39 small profile SeqLogo of Esrrg
Smad2 2.38 small profile SeqLogo of Smad2
Smad1 2.37 small profile SeqLogo of Smad1
Tfap2d 2.37 small profile SeqLogo of Tfap2d
Hand1 2.35 small profile SeqLogo of Hand1
Gmeb1 2.35 small profile SeqLogo of Gmeb1
Osr2_Osr1 2.34 small profile SeqLogo of Osr2_Osr1
Zic3 2.33 small profile SeqLogo of Zic3
Nanog 2.33 small profile SeqLogo of Nanog
Obox1 2.30 small profile SeqLogo of Obox1
Nr4a3 2.30 small profile SeqLogo of Nr4a3
Hsf4 2.30 small profile SeqLogo of Hsf4
Myf6 2.30 small profile SeqLogo of Myf6
Nfix 2.29 small profile SeqLogo of Nfix
Smarcc1_Fosl1 2.29 small profile SeqLogo of Smarcc1_Fosl1
Gfi1_Gfi1b 2.25 small profile SeqLogo of Gfi1_Gfi1b
Hey2 2.24 small profile SeqLogo of Hey2
Brca1 2.22 small profile SeqLogo of Brca1
Zfhx3 2.22 small profile SeqLogo of Zfhx3
Trp53 2.22 small profile SeqLogo of Trp53
Mef2b 2.20 small profile SeqLogo of Mef2b
Atoh1_Bhlhe23 2.18 small profile SeqLogo of Atoh1_Bhlhe23
Gsx2_Hoxd3_Vax1 2.18 small profile SeqLogo of Gsx2_Hoxd3_Vax1
Ppara 2.17 small profile SeqLogo of Ppara
Cux1 2.17 small profile SeqLogo of Cux1
Etv4 2.17 small profile SeqLogo of Etv4
Hoxa9_Hoxb9 2.15 small profile SeqLogo of Hoxa9_Hoxb9
Srf 2.15 small profile SeqLogo of Srf
Vsx2_Dlx3 2.12 small profile SeqLogo of Vsx2_Dlx3
Hoxb3 2.11 small profile SeqLogo of Hoxb3
Rreb1 2.10 small profile SeqLogo of Rreb1
Cpeb1 2.10 small profile SeqLogo of Cpeb1
Tfcp2l1 2.10 small profile SeqLogo of Tfcp2l1
Nr6a1 2.09 small profile SeqLogo of Nr6a1
Emx1_Emx2 2.08 small profile SeqLogo of Emx1_Emx2
Foxf2 2.08 small profile SeqLogo of Foxf2
Nkx6-2 2.08 small profile SeqLogo of Nkx6-2
Meis2 2.04 small profile SeqLogo of Meis2
Sox8 2.03 small profile SeqLogo of Sox8
Elf3 2.01 small profile SeqLogo of Elf3
Hmx2 2.01 small profile SeqLogo of Hmx2
Thra 2.01 small profile SeqLogo of Thra
Runx3 2.00 small profile SeqLogo of Runx3
Tfap2a 2.00 small profile SeqLogo of Tfap2a
Hsf1 1.99 small profile SeqLogo of Hsf1
Hoxb5 1.99 small profile SeqLogo of Hoxb5
Ovol1 1.98 small profile SeqLogo of Ovol1
Klf15 1.98 small profile SeqLogo of Klf15
Smad3 1.96 small profile SeqLogo of Smad3
Cdc5l 1.96 small profile SeqLogo of Cdc5l
Lhx8 1.95 small profile SeqLogo of Lhx8
Nr1i3 1.95 small profile SeqLogo of Nr1i3
Rarb 1.93 small profile SeqLogo of Rarb
Hoxb6 1.92 small profile SeqLogo of Hoxb6
Zfp105 1.92 small profile SeqLogo of Zfp105
Zbtb4 1.92 small profile SeqLogo of Zbtb4
Ebf3 1.91 small profile SeqLogo of Ebf3
Meox2 1.90 small profile SeqLogo of Meox2
Pax5 1.90 small profile SeqLogo of Pax5
Zbtb3 1.90 small profile SeqLogo of Zbtb3
E2f1 1.89 small profile SeqLogo of E2f1
Hoxc9 1.88