Project
ENCODE: H3K4me1 ChIP-Seq of primary human cells
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CREMA identifies cis-regulatory elements genome-wide and models their activities across samples in terms of predicted transcription factor binding sites within them.

Regulatory motifs sorted by significance (z-value)

Motif name Z-value Associated genes Profile Logo
ZNF711_TFAP2A_TFAP2D 18.50 small profile SeqLogo of ZNF711_TFAP2A_TFAP2D
RCOR1_MTA3 16.74 small profile SeqLogo of RCOR1_MTA3
CEBPA 15.64 small profile SeqLogo of CEBPA
FOXM1_TBL1XR1 15.47 small profile SeqLogo of FOXM1_TBL1XR1
CXXC1 14.65 small profile SeqLogo of CXXC1
SPIC 14.34 small profile SeqLogo of SPIC
MECP2 14.11 small profile SeqLogo of MECP2
FOXL1 13.07 small profile SeqLogo of FOXL1
ZNF384 11.83 small profile SeqLogo of ZNF384
HMGA1 11.45 small profile SeqLogo of HMGA1
TEAD3_TEAD1 11.44 small profile SeqLogo of TEAD3_TEAD1
ID4_TCF4_SNAI2 11.26 small profile SeqLogo of ID4_TCF4_SNAI2
GATA3 10.97 small profile SeqLogo of GATA3
TP63 10.54 small profile SeqLogo of TP63
PLAGL1 10.03 small profile SeqLogo of PLAGL1
AHR_ARNT2 9.57 small profile SeqLogo of AHR_ARNT2
E2F3 9.10 small profile SeqLogo of E2F3
BPTF 9.00 small profile SeqLogo of BPTF
NFIX_NFIB 8.87 small profile SeqLogo of NFIX_NFIB
ELK4_ETV5_ELK1_ELK3_ELF4 8.46 small profile SeqLogo of ELK4_ETV5_ELK1_ELK3_ELF4
HOMEZ 7.99 small profile SeqLogo of HOMEZ
BATF 7.55 small profile SeqLogo of BATF
TLX1_NFIC 7.53 small profile SeqLogo of TLX1_NFIC
PITX1 7.41 small profile SeqLogo of PITX1
RUNX1_RUNX2 7.28 small profile SeqLogo of RUNX1_RUNX2
ARID5A 6.81 small profile SeqLogo of ARID5A
BACH1_NFE2_NFE2L2 6.57 small profile SeqLogo of BACH1_NFE2_NFE2L2
SP100 6.37 small profile SeqLogo of SP100
TBP 6.34 small profile SeqLogo of TBP
FOSL2_SMARCC1 6.19 small profile SeqLogo of FOSL2_SMARCC1
IKZF1 6.02 small profile SeqLogo of IKZF1
BARHL1 6.01 small profile SeqLogo of BARHL1
CDC5L 5.75 small profile SeqLogo of CDC5L
ZNF524 5.73 small profile SeqLogo of ZNF524
JDP2 5.66 small profile SeqLogo of JDP2
HMBOX1 5.49 small profile SeqLogo of HMBOX1
ERG 5.40 small profile SeqLogo of ERG
HOXA13 5.25 small profile SeqLogo of HOXA13
TAL1 5.18 small profile SeqLogo of TAL1
ZNF333 5.13 small profile SeqLogo of ZNF333
GATA1_GATA4 5.08 small profile SeqLogo of GATA1_GATA4
GMEB1 5.04 small profile SeqLogo of GMEB1
GATA5 5.03 small profile SeqLogo of GATA5
POU2F1 4.97 small profile SeqLogo of POU2F1
GLIS2 4.97 small profile SeqLogo of GLIS2
FOSB 4.83 small profile SeqLogo of FOSB
AIRE 4.83 small profile SeqLogo of AIRE
ZBTB33_CHD2 4.79 small profile SeqLogo of ZBTB33_CHD2
MAFK 4.78 small profile SeqLogo of MAFK
NFIL3 4.76 small profile SeqLogo of NFIL3
SOX13_SOX12 4.74 small profile SeqLogo of SOX13_SOX12
FOXN1 4.65 small profile SeqLogo of FOXN1
KLF8 4.57 small profile SeqLogo of KLF8
SMAD1 4.56 small profile SeqLogo of SMAD1
GATA2 4.55 small profile SeqLogo of GATA2
SPIB 4.55 small profile SeqLogo of SPIB
ELF2_GABPA_ELF5 4.54 small profile SeqLogo of ELF2_GABPA_ELF5
POU3F2 4.47 small profile SeqLogo of POU3F2
EOMES 4.45 small profile SeqLogo of EOMES
IRF6_IRF4_IRF5 4.45 small profile SeqLogo of IRF6_IRF4_IRF5
CEBPE_CEBPD 4.41 small profile SeqLogo of CEBPE_CEBPD
HSFY2 4.40 small profile SeqLogo of HSFY2
BARHL2 4.30 small profile SeqLogo of BARHL2
HIC2 4.25 small profile SeqLogo of HIC2
CEBPB 4.25 small profile SeqLogo of CEBPB
ISL1 4.21 small profile SeqLogo of ISL1
HOXD9 4.20 small profile SeqLogo of HOXD9
MYBL1 4.15 small profile SeqLogo of MYBL1
NFIA 4.08 small profile SeqLogo of NFIA
EBF3 4.06 small profile SeqLogo of EBF3
WT1_MTF1_ZBTB7B 4.05 small profile SeqLogo of WT1_MTF1_ZBTB7B
PATZ1_KLF4 4.05 small profile SeqLogo of PATZ1_KLF4
UBP1 4.01 small profile SeqLogo of UBP1
ZNF35 4.01 small profile SeqLogo of ZNF35
WRNIP1 4.00 small profile SeqLogo of WRNIP1
CENPB 3.94 small profile SeqLogo of CENPB
JUN 3.92 small profile SeqLogo of JUN
SP3 3.88 small profile SeqLogo of SP3
NFE2L1 3.85 small profile SeqLogo of NFE2L1
ETV1_ERF_FEV_ELF1 3.83 small profile SeqLogo of ETV1_ERF_FEV_ELF1
MAFB 3.80 small profile SeqLogo of MAFB
EPAS1_BCL3 3.77 small profile SeqLogo of EPAS1_BCL3
SP1 3.74 small profile SeqLogo of SP1
BCL6B 3.72 small profile SeqLogo of BCL6B
SOX11 3.71 small profile SeqLogo of SOX11
STAT1_STAT3_BCL6 3.70 small profile SeqLogo of STAT1_STAT3_BCL6
TBX3 3.68 small profile SeqLogo of TBX3
MAZ_ZNF281_GTF2F1 3.65 small profile SeqLogo of MAZ_ZNF281_GTF2F1
YBX1_FOS_NFYC_NFYA_NFYB_CEBPZ 3.63 small profile SeqLogo of YBX1_FOS_NFYC_NFYA_NFYB_CEBPZ
FOXQ1 3.62 small profile SeqLogo of FOXQ1
TCF7 3.62 small profile SeqLogo of TCF7
ZBTB12 3.61 small profile SeqLogo of ZBTB12
NKX2-4 3.60 small profile SeqLogo of NKX2-4
E2F7_E2F1 3.58 small profile SeqLogo of E2F7_E2F1
LHX2 3.57 small profile SeqLogo of LHX2
BARX1 3.53 small profile SeqLogo of BARX1
FOXA2_FOXJ3 3.50 small profile SeqLogo of FOXA2_FOXJ3
SIX1_SIX3_SIX2 3.50 small profile SeqLogo of SIX1_SIX3_SIX2
ZBTB16 3.47 small profile SeqLogo of ZBTB16
STAT5A 3.47 small profile SeqLogo of STAT5A
NKX2-8 3.45 small profile SeqLogo of NKX2-8
IRX3 3.41 small profile SeqLogo of IRX3
TFAP2C 3.41 small profile SeqLogo of TFAP2C
HOXA9 3.39 small profile SeqLogo of HOXA9
NR2E3 3.37 small profile SeqLogo of NR2E3
TWIST1_SNAI1 3.34 small profile SeqLogo of TWIST1_SNAI1
MEF2C 3.34 small profile SeqLogo of MEF2C
GFI1 3.31 small profile SeqLogo of GFI1
DLX4_HOXD8 3.29 small profile SeqLogo of DLX4_HOXD8
HOXC8 3.26 small profile SeqLogo of HOXC8
HOXA5 3.25 small profile SeqLogo of HOXA5
MYBL2 3.23 small profile SeqLogo of MYBL2
GCM2 3.15 small profile SeqLogo of GCM2
JUND 3.14 small profile SeqLogo of JUND
HOXD4 3.14 small profile SeqLogo of HOXD4
IRF2_STAT2_IRF8_IRF1 3.13 small profile SeqLogo of IRF2_STAT2_IRF8_IRF1
RREB1 3.13 small profile SeqLogo of RREB1
YY1_YY2 3.09 small profile SeqLogo of YY1_YY2
ZEB1 3.08 small profile SeqLogo of ZEB1
GMEB2 3.08 small profile SeqLogo of GMEB2
HMX2 3.07 small profile SeqLogo of HMX2
SP4_PML 3.06 small profile SeqLogo of SP4_PML
ESRRA_ESR2 3.04 small profile SeqLogo of ESRRA_ESR2
OLIG3_NEUROD2_NEUROG2 3.04 small profile SeqLogo of OLIG3_NEUROD2_NEUROG2
HINFP 3.01 small profile SeqLogo of HINFP
KLF7 2.96 small profile SeqLogo of KLF7
MLXIPL 2.95 small profile SeqLogo of MLXIPL
MECOM 2.95 small profile SeqLogo of MECOM
CUX2 2.94 small profile SeqLogo of CUX2
RAD21_SMC3 2.88 small profile SeqLogo of RAD21_SMC3
RXRA_NR2F6_NR2C2 2.88 small profile SeqLogo of RXRA_NR2F6_NR2C2
KLF16_SP2 2.87 small profile SeqLogo of KLF16_SP2
EBF1 2.87 small profile SeqLogo of EBF1
FOXA1 2.87 small profile SeqLogo of FOXA1
FOXK1_FOXP2_FOXB1_FOXP3 2.85 small profile SeqLogo of FOXK1_FOXP2_FOXB1_FOXP3
NFKB2 2.84 small profile SeqLogo of NFKB2
ELF3_EHF 2.83 small profile SeqLogo of ELF3_EHF
EGR1_EGR4 2.83 small profile SeqLogo of EGR1_EGR4
TFCP2 2.77 small profile SeqLogo of TFCP2
PAX5 2.73 small profile SeqLogo of PAX5
LEF1 2.73 small profile SeqLogo of LEF1
MAF_NRL 2.72 small profile SeqLogo of MAF_NRL
SOX8 2.71 small profile SeqLogo of SOX8
RHOXF1 2.71 small profile SeqLogo of RHOXF1
NR2E1 2.68 small profile SeqLogo of NR2E1
EMX2 2.67 small profile SeqLogo of EMX2
TLX2 2.66 small profile SeqLogo of TLX2
TP53 2.64 small profile SeqLogo of TP53
VDR 2.63 small profile SeqLogo of VDR
NKX2-3 2.62 small profile SeqLogo of NKX2-3
MAFF_MAFG 2.59 small profile SeqLogo of MAFF_MAFG
FOXO4 2.58 small profile SeqLogo of FOXO4
RELB 2.58 small profile SeqLogo of RELB
PGR 2.57 small profile SeqLogo of PGR
PITX3 2.56 small profile SeqLogo of PITX3
CTCF_CTCFL 2.54 small profile SeqLogo of CTCF_CTCFL
RARG 2.54 small profile SeqLogo of RARG
ARID5B 2.54 small profile SeqLogo of ARID5B
IRX2 2.53 small profile SeqLogo of IRX2
MXI1_MYC_MYCN 2.52 small profile SeqLogo of MXI1_MYC_MYCN
HMX3 2.50 small profile SeqLogo of HMX3
MAX_TFEB 2.46 small profile SeqLogo of MAX_TFEB
HSF1 2.45 small profile SeqLogo of HSF1
TFAP4_MSC 2.43 small profile SeqLogo of TFAP4_MSC
HOXA1 2.43 small profile SeqLogo of HOXA1
CLOCK 2.41 small profile SeqLogo of CLOCK
GRHL1 2.41 small profile SeqLogo of GRHL1
CDX1 2.40 small profile SeqLogo of CDX1
ARNT 2.37 small profile SeqLogo of ARNT
SIX6 2.37 small profile SeqLogo of SIX6
ZFX 2.36 small profile SeqLogo of ZFX
HBP1 2.35 small profile SeqLogo of HBP1
RARA 2.35 small profile SeqLogo of RARA
PITX2 2.34 small profile SeqLogo of PITX2
NRF1 2.34 small profile SeqLogo of NRF1
OSR1_OSR2 2.32 small profile SeqLogo of OSR1_OSR2
SOX3_SOX2 2.30 small profile SeqLogo of SOX3_SOX2
ZBTB14 2.29 small profile SeqLogo of ZBTB14
FOSL1 2.28 small profile SeqLogo of FOSL1
ARID3A 2.28 small profile SeqLogo of ARID3A
KLF3 2.27 small profile SeqLogo of KLF3
TEAD4 2.27 small profile SeqLogo of TEAD4
SIX5_SMARCC2_HCFC1 2.27 small profile SeqLogo of SIX5_SMARCC2_HCFC1
HDX 2.26 small profile SeqLogo of HDX
GFI1B 2.25 small profile SeqLogo of GFI1B
ZSCAN4 2.20 small profile SeqLogo of ZSCAN4
PAX4 2.19 small profile SeqLogo of PAX4
NKX6-2 2.14 small profile SeqLogo of NKX6-2
NR1H4 2.14 small profile SeqLogo of NR1H4
HOXC13 2.13 small profile SeqLogo of HOXC13
DMC1 2.12 small profile SeqLogo of DMC1
NR1I2 2.12 small profile SeqLogo of NR1I2
ETS1 2.10 small profile SeqLogo of ETS1
MZF1 2.10 small profile SeqLogo of MZF1
ZBTB7A_ZBTB7C 2.09 small profile SeqLogo of ZBTB7A_ZBTB7C
BBX 2.09 small profile SeqLogo of BBX
MESP1 2.09 small profile SeqLogo of MESP1
NKX2-5 2.09 small profile SeqLogo of NKX2-5
NR2F2 2.08 small profile SeqLogo of NR2F2
HOXA2_HOXB1 2.07 small profile SeqLogo of HOXA2_HOXB1
FOXD3_FOXI1_FOXF1 2.07 small profile SeqLogo of FOXD3_FOXI1_FOXF1
ZBTB18 2.07 small profile SeqLogo of ZBTB18
KLF1 2.06 small profile SeqLogo of KLF1
ZNF784 2.04 small profile SeqLogo of ZNF784
KLF14_SP8 2.03 small profile SeqLogo of KLF14_SP8
NFATC4 2.03 small profile SeqLogo of NFATC4
SOX18 2.02 small profile SeqLogo of SOX18
NHLH1 2.02 small profile SeqLogo of NHLH1
DUXA 2.02 small profile SeqLogo of DUXA
NKX3-2 1.99 small profile SeqLogo of NKX3-2
HOXC9 1.99 small profile SeqLogo of HOXC9
NKX3-1 1.98 small profile SeqLogo of NKX3-1
ATF2_ATF1_ATF3 1.97 small profile SeqLogo of ATF2_ATF1_ATF3
POU5F1_POU2F3 1.96 small profile SeqLogo of POU5F1_POU2F3
PROX1 1.94 small profile SeqLogo of PROX1
SREBF1_TFE3 1.94 small profile SeqLogo of SREBF1_TFE3
ESR1 1.93 small profile SeqLogo of ESR1
HOXD10 1.93 small profile SeqLogo of HOXD10
DPRX 1.92 small profile SeqLogo of DPRX
ZBTB3 1.91 small profile SeqLogo of ZBTB3
XBP1 1.90 small profile SeqLogo of XBP1
GLI3 1.89 small profile SeqLogo of GLI3
NKX2-2 1.87 small profile SeqLogo of NKX2-2
ZBTB49 1.87 small profile SeqLogo of ZBTB49
FLI1 1.87 small profile SeqLogo of FLI1
ZBTB4 1.86 small profile SeqLogo of ZBTB4
BRCA1 1.85 small profile SeqLogo of BRCA1
DBX2_HLX 1.84 small profile SeqLogo of DBX2_HLX
SMAD2 1.83 small profile SeqLogo of SMAD2
MYB 1.83 small profile SeqLogo of MYB
ATF6 1.81 small profile SeqLogo of ATF6
RFX7_RFX4_RFX1 1.80 small profile SeqLogo of RFX7_RFX4_RFX1
NR4A3 1.80 small profile SeqLogo of NR4A3
PPARG 1.79 small profile SeqLogo of PPARG
ZBTB6 1.79 small profile SeqLogo of ZBTB6
OVOL1 1.77 small profile SeqLogo of OVOL1
DDIT3 1.77 small profile SeqLogo of DDIT3
ALX3 1.76 small profile SeqLogo of ALX3
PAX8 1.75 small profile SeqLogo of PAX8
MIXL1_GSX1_BSX_MEOX2_LHX4 1.75 small profile SeqLogo of MIXL1_GSX1_BSX_MEOX2_LHX4
E2F2_E2F5 1.74 small profile SeqLogo of E2F2_E2F5
ETV4_ETS2 1.74 small profile SeqLogo of ETV4_ETS2
IRF7 1.74 small profile SeqLogo of IRF7
SMAD3 1.73 small profile SeqLogo of SMAD3
HOXB7 1.73 small profile SeqLogo of HOXB7
RUNX3_BCL11A 1.73 small profile SeqLogo of RUNX3_BCL11A
HES1 1.73 small profile SeqLogo of HES1
ETV6 1.73 small profile SeqLogo of ETV6
MNT_HEY1_HEY2 1.72 small profile SeqLogo of MNT_HEY1_HEY2
MAFA 1.72 small profile SeqLogo of MAFA
SCRT1_SCRT2 1.69 small profile SeqLogo of SCRT1_SCRT2
POU1F1 1.69 small profile SeqLogo of POU1F1
STAT6 1.68 small profile SeqLogo of STAT6
SOX5 1.68 small profile SeqLogo of SOX5
SRF 1.68 small profile SeqLogo of SRF
REL 1.67 small profile SeqLogo of REL
HMGA2 1.67 small profile SeqLogo of HMGA2
ZNF143 1.65 small profile SeqLogo of ZNF143
ZIC3_ZIC4 1.65 small profile SeqLogo of ZIC3_ZIC4
HOXB2_UNCX_HOXD3 1.64 small profile SeqLogo of HOXB2_UNCX_HOXD3
RORA 1.64 small profile SeqLogo of RORA
VAX1_GSX2 1.64 small profile SeqLogo of VAX1_GSX2
ATF4 1.63 small profile SeqLogo of ATF4
ZNF691 1.62 small profile SeqLogo of ZNF691
MEIS2 1.62 small profile SeqLogo of MEIS2
NFATC1 1.61 small profile SeqLogo of NFATC1
HOXD1 1.61 small profile SeqLogo of HOXD1
ESRRB_ESRRG 1.61 small profile SeqLogo of ESRRB_ESRRG
ATF5 1.61 small profile SeqLogo of ATF5
HOXD11_HOXA11 1.60 small profile SeqLogo of HOXD11_HOXA11
TFAP2B 1.60 small profile SeqLogo of TFAP2B
TCF7L2 1.60 small profile SeqLogo of TCF7L2
TCF21 1.59 small profile SeqLogo of TCF21
IKZF2 1.58 small profile SeqLogo of IKZF2
DLX5 1.58 small profile SeqLogo of DLX5
ZIC1 1.58 small profile SeqLogo of ZIC1
EP300 1.58 small profile SeqLogo of EP300
E2F8 1.58 small profile SeqLogo of E2F8
HIVEP1 1.57 small profile SeqLogo of HIVEP1
ISX 1.57 small profile SeqLogo of ISX
HLF_TEF 1.57 small profile SeqLogo of HLF_TEF
SOX17 1.56 small profile SeqLogo of SOX17
NR3C1 1.54 small profile SeqLogo of NR3C1
MLX_USF2_USF1_PAX2 1.54 small profile SeqLogo of MLX_USF2_USF1_PAX2
KLF12 1.53 small profile SeqLogo of KLF12
DRGX_PROP1 1.53 small profile SeqLogo of DRGX_PROP1
ZFHX3 1.53 small profile SeqLogo of ZFHX3
OTX1 1.52 small profile SeqLogo of OTX1
ETV2 1.52 small profile SeqLogo of ETV2
T 1.51 small profile SeqLogo of T
HOXB3 1.50 small profile SeqLogo of HOXB3
PBX3 1.50 small profile SeqLogo of PBX3
OTX2_CRX 1.48