Project
ENCODE: H3K4me3 ChIP-Seq of primary human cells
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CREMA identifies cis-regulatory elements genome-wide and models their activities across samples in terms of predicted transcription factor binding sites within them.

Regulatory motifs sorted by significance (z-value)

Motif name Z-value Associated genes Profile Logo
ZNF711_TFAP2A_TFAP2D 11.68 small profile SeqLogo of ZNF711_TFAP2A_TFAP2D
CXXC1 10.13 small profile SeqLogo of CXXC1
RCOR1_MTA3 9.44 small profile SeqLogo of RCOR1_MTA3
SPIC 9.37 small profile SeqLogo of SPIC
ID4_TCF4_SNAI2 9.20 small profile SeqLogo of ID4_TCF4_SNAI2
ZNF274 8.50 small profile SeqLogo of ZNF274
NFIX_NFIB 7.51 small profile SeqLogo of NFIX_NFIB
SP4_PML 7.28 small profile SeqLogo of SP4_PML
MECP2 6.74 small profile SeqLogo of MECP2
CEBPA 6.54 small profile SeqLogo of CEBPA
IRF2_STAT2_IRF8_IRF1 6.52 small profile SeqLogo of IRF2_STAT2_IRF8_IRF1
ELK4_ETV5_ELK1_ELK3_ELF4 6.43 small profile SeqLogo of ELK4_ETV5_ELK1_ELK3_ELF4
FOXL1 6.40 small profile SeqLogo of FOXL1
RUNX1_RUNX2 6.11 small profile SeqLogo of RUNX1_RUNX2
ZBTB16 6.01 small profile SeqLogo of ZBTB16
TP63 5.89 small profile SeqLogo of TP63
TEAD3_TEAD1 5.83 small profile SeqLogo of TEAD3_TEAD1
ELF2_GABPA_ELF5 5.52 small profile SeqLogo of ELF2_GABPA_ELF5
WT1_MTF1_ZBTB7B 5.51 small profile SeqLogo of WT1_MTF1_ZBTB7B
E2F3 5.30 small profile SeqLogo of E2F3
HMGA1 5.24 small profile SeqLogo of HMGA1
ARID3A 5.23 small profile SeqLogo of ARID3A
FOXM1_TBL1XR1 5.17 small profile SeqLogo of FOXM1_TBL1XR1
PAX5 5.09 small profile SeqLogo of PAX5
GATA3 5.06 small profile SeqLogo of GATA3
PLAGL1 4.97 small profile SeqLogo of PLAGL1
SIX5_SMARCC2_HCFC1 4.92 small profile SeqLogo of SIX5_SMARCC2_HCFC1
ERG 4.79 small profile SeqLogo of ERG
GMEB2 4.58 small profile SeqLogo of GMEB2
ARID5A 4.43 small profile SeqLogo of ARID5A
PITX1 4.42 small profile SeqLogo of PITX1
SP100 4.41 small profile SeqLogo of SP100
YBX1_FOS_NFYC_NFYA_NFYB_CEBPZ 4.40 small profile SeqLogo of YBX1_FOS_NFYC_NFYA_NFYB_CEBPZ
PATZ1_KLF4 4.38 small profile SeqLogo of PATZ1_KLF4
ZNF384 4.27 small profile SeqLogo of ZNF384
TAF1 4.19 small profile SeqLogo of TAF1
PRDM1 4.18 small profile SeqLogo of PRDM1
NFATC4 4.13 small profile SeqLogo of NFATC4
IRF7 4.12 small profile SeqLogo of IRF7
MAFK 4.05 small profile SeqLogo of MAFK
NRF1 4.04 small profile SeqLogo of NRF1
POU3F2 4.02 small profile SeqLogo of POU3F2
AHR_ARNT2 4.01 small profile SeqLogo of AHR_ARNT2
BATF 3.97 small profile SeqLogo of BATF
GFI1B 3.91 small profile SeqLogo of GFI1B
DLX4_HOXD8 3.91 small profile SeqLogo of DLX4_HOXD8
ZBTB33_CHD2 3.89 small profile SeqLogo of ZBTB33_CHD2
SOX3_SOX2 3.87 small profile SeqLogo of SOX3_SOX2
TAL1 3.87 small profile SeqLogo of TAL1
HOXC8 3.86 small profile SeqLogo of HOXC8
YY1_YY2 3.84 small profile SeqLogo of YY1_YY2
ESRRA_ESR2 3.74 small profile SeqLogo of ESRRA_ESR2
SOX8 3.64 small profile SeqLogo of SOX8
BARHL1 3.61 small profile SeqLogo of BARHL1
ZEB1 3.53 small profile SeqLogo of ZEB1
MAFB 3.42 small profile SeqLogo of MAFB
IRF6_IRF4_IRF5 3.40 small profile SeqLogo of IRF6_IRF4_IRF5
SPIB 3.40 small profile SeqLogo of SPIB
ZNF35 3.37 small profile SeqLogo of ZNF35
FOXK1_FOXP2_FOXB1_FOXP3 3.34 small profile SeqLogo of FOXK1_FOXP2_FOXB1_FOXP3
GATA5 3.33 small profile SeqLogo of GATA5
SOX18 3.32 small profile SeqLogo of SOX18
CDC5L 3.32 small profile SeqLogo of CDC5L
KLF16_SP2 3.30 small profile SeqLogo of KLF16_SP2
ZNF524 3.29 small profile SeqLogo of ZNF524
HOMEZ 3.26 small profile SeqLogo of HOMEZ
MYBL2 3.20 small profile SeqLogo of MYBL2
HOXA5 3.19 small profile SeqLogo of HOXA5
GATA1_GATA4 3.16 small profile SeqLogo of GATA1_GATA4
HSFY2 3.16 small profile SeqLogo of HSFY2
ZFX 3.12 small profile SeqLogo of ZFX
GMEB1 3.07 small profile SeqLogo of GMEB1
MYBL1 3.06 small profile SeqLogo of MYBL1
FOXN1 3.05 small profile SeqLogo of FOXN1
IKZF1 3.03 small profile SeqLogo of IKZF1
NR3C1 2.99 small profile SeqLogo of NR3C1
TFAP2C 2.99 small profile SeqLogo of TFAP2C
CUX2 2.96 small profile SeqLogo of CUX2
GATA2 2.96 small profile SeqLogo of GATA2
OLIG3_NEUROD2_NEUROG2 2.88 small profile SeqLogo of OLIG3_NEUROD2_NEUROG2
POU5F1_POU2F3 2.87 small profile SeqLogo of POU5F1_POU2F3
ISL1 2.81 small profile SeqLogo of ISL1
MAZ_ZNF281_GTF2F1 2.79 small profile SeqLogo of MAZ_ZNF281_GTF2F1
SMAD1 2.78 small profile SeqLogo of SMAD1
SP1 2.76 small profile SeqLogo of SP1
BPTF 2.72 small profile SeqLogo of BPTF
ONECUT1 2.72 small profile SeqLogo of ONECUT1
SP3 2.67 small profile SeqLogo of SP3
TCF7 2.64 small profile SeqLogo of TCF7
EOMES 2.63 small profile SeqLogo of EOMES
HIC2 2.59 small profile SeqLogo of HIC2
HOXD9 2.58 small profile SeqLogo of HOXD9
TBX1 2.57 small profile SeqLogo of TBX1
IRF3 2.56 small profile SeqLogo of IRF3
MYB 2.55 small profile SeqLogo of MYB
ATF2_ATF1_ATF3 2.55 small profile SeqLogo of ATF2_ATF1_ATF3
RARA 2.54 small profile SeqLogo of RARA
EPAS1_BCL3 2.52 small profile SeqLogo of EPAS1_BCL3
HIC1 2.51 small profile SeqLogo of HIC1
POU2F1 2.48 small profile SeqLogo of POU2F1
FOXQ1 2.48 small profile SeqLogo of FOXQ1
BACH1_NFE2_NFE2L2 2.46 small profile SeqLogo of BACH1_NFE2_NFE2L2
SIN3A_CHD1 2.42 small profile SeqLogo of SIN3A_CHD1
ZNF333 2.40 small profile SeqLogo of ZNF333
MEIS2 2.39 small profile SeqLogo of MEIS2
HOXD10 2.39 small profile SeqLogo of HOXD10
SOX13_SOX12 2.39 small profile SeqLogo of SOX13_SOX12
ZBTB14 2.37 small profile SeqLogo of ZBTB14
GLIS2 2.37 small profile SeqLogo of GLIS2
KLF8 2.37 small profile SeqLogo of KLF8
AIRE 2.36 small profile SeqLogo of AIRE
HMBOX1 2.35 small profile SeqLogo of HMBOX1
IRX3 2.33 small profile SeqLogo of IRX3
MAF_NRL 2.31 small profile SeqLogo of MAF_NRL
PITX3 2.28 small profile SeqLogo of PITX3
PAX4 2.27 small profile SeqLogo of PAX4
PAX6 2.26 small profile SeqLogo of PAX6
NFIA 2.26 small profile SeqLogo of NFIA
E2F7_E2F1 2.24 small profile SeqLogo of E2F7_E2F1
E2F8 2.23 small profile SeqLogo of E2F8
TEAD4 2.20 small profile SeqLogo of TEAD4
NFATC2_NFATC3 2.20 small profile SeqLogo of NFATC2_NFATC3
HOXA9 2.18 small profile SeqLogo of HOXA9
LHX2 2.18 small profile SeqLogo of LHX2
PAX8 2.16 small profile SeqLogo of PAX8
CEBPE_CEBPD 2.16 small profile SeqLogo of CEBPE_CEBPD
ETV1_ERF_FEV_ELF1 2.16 small profile SeqLogo of ETV1_ERF_FEV_ELF1
TWIST1_SNAI1 2.15 small profile SeqLogo of TWIST1_SNAI1
PGR 2.13 small profile SeqLogo of PGR
UBP1 2.11 small profile SeqLogo of UBP1
RARG 2.08 small profile SeqLogo of RARG
SMAD4 2.08 small profile SeqLogo of SMAD4
NKX6-2 2.06 small profile SeqLogo of NKX6-2
RELB 2.06 small profile SeqLogo of RELB
SREBF1_TFE3 2.05 small profile SeqLogo of SREBF1_TFE3
MAFF_MAFG 2.03 small profile SeqLogo of MAFF_MAFG
SMAD2 2.02 small profile SeqLogo of SMAD2
MXI1_MYC_MYCN 2.02 small profile SeqLogo of MXI1_MYC_MYCN
KLF12 2.01 small profile SeqLogo of KLF12
DUXA 2.01 small profile SeqLogo of DUXA
IRX2 2.00 small profile SeqLogo of IRX2
NFKB2 1.99 small profile SeqLogo of NFKB2
TBX3 1.99 small profile SeqLogo of TBX3
STAT5A 1.98 small profile SeqLogo of STAT5A
PPARG 1.97 small profile SeqLogo of PPARG
HOXC13 1.96 small profile SeqLogo of HOXC13
NR2E3 1.94 small profile SeqLogo of NR2E3
NKX2-4 1.93 small profile SeqLogo of NKX2-4
KLF7 1.91 small profile SeqLogo of KLF7
FOXO4 1.91 small profile SeqLogo of FOXO4
ZBTB18 1.91 small profile SeqLogo of ZBTB18
BARX1 1.90 small profile SeqLogo of BARX1
CEBPB 1.89 small profile SeqLogo of CEBPB
ZSCAN4 1.89 small profile SeqLogo of ZSCAN4
RFX7_RFX4_RFX1 1.89 small profile SeqLogo of RFX7_RFX4_RFX1
EMX2 1.89 small profile SeqLogo of EMX2
RHOXF1 1.88 small profile SeqLogo of RHOXF1
ZNF652 1.88 small profile SeqLogo of ZNF652
PAX3 1.86 small profile SeqLogo of PAX3
POU1F1 1.86 small profile SeqLogo of POU1F1
TCF12_ASCL2 1.84 small profile SeqLogo of TCF12_ASCL2
ATF6 1.83 small profile SeqLogo of ATF6
GFI1 1.82 small profile SeqLogo of GFI1
CTCF_CTCFL 1.81 small profile SeqLogo of CTCF_CTCFL
NFIL3 1.81 small profile SeqLogo of NFIL3
CENPB 1.80 small profile SeqLogo of CENPB
ZBTB4 1.80 small profile SeqLogo of ZBTB4
BBX 1.79 small profile SeqLogo of BBX
CDX1 1.78 small profile SeqLogo of CDX1
HOXA1 1.77 small profile SeqLogo of HOXA1
TBP 1.77 small profile SeqLogo of TBP
TLX2 1.77 small profile SeqLogo of TLX2
NFE2L1 1.76 small profile SeqLogo of NFE2L1
POU3F3_POU3F4 1.75 small profile SeqLogo of POU3F3_POU3F4
NFATC1 1.75 small profile SeqLogo of NFATC1
MECOM 1.74 small profile SeqLogo of MECOM
JUND 1.73 small profile SeqLogo of JUND
ZNF784 1.72 small profile SeqLogo of ZNF784
HOXB2_UNCX_HOXD3 1.72 small profile SeqLogo of HOXB2_UNCX_HOXD3
PROX1 1.72 small profile SeqLogo of PROX1
PTF1A 1.71 small profile SeqLogo of PTF1A
ETV7 1.71 small profile SeqLogo of ETV7
SIX1_SIX3_SIX2 1.68 small profile SeqLogo of SIX1_SIX3_SIX2
RFX3_RFX2 1.68 small profile SeqLogo of RFX3_RFX2
TLX1_NFIC 1.68 small profile SeqLogo of TLX1_NFIC
HINFP 1.67 small profile SeqLogo of HINFP
HESX1 1.66 small profile SeqLogo of HESX1
HOXC9 1.65 small profile SeqLogo of HOXC9
HOXA13 1.65 small profile SeqLogo of HOXA13
NKX3-2 1.65 small profile SeqLogo of NKX3-2
FOXJ2 1.65 small profile SeqLogo of FOXJ2
GCM2 1.64 small profile SeqLogo of GCM2
SOX17 1.62 small profile SeqLogo of SOX17
NKX2-8 1.62 small profile SeqLogo of NKX2-8
KLF15 1.62 small profile SeqLogo of KLF15
TBX21_TBR1 1.61 small profile SeqLogo of TBX21_TBR1
HOXB8 1.60 small profile SeqLogo of HOXB8
IRF9 1.60 small profile SeqLogo of IRF9
ARID5B 1.60 small profile SeqLogo of ARID5B
NKX2-1 1.59 small profile SeqLogo of NKX2-1
XBP1 1.58 small profile SeqLogo of XBP1
ZBTB7A_ZBTB7C 1.58 small profile SeqLogo of ZBTB7A_ZBTB7C
BCL6B 1.58 small profile SeqLogo of BCL6B
SIX6 1.58 small profile SeqLogo of SIX6
NR1I2 1.58 small profile SeqLogo of NR1I2
HOXA10_HOXB9 1.58 small profile SeqLogo of HOXA10_HOXB9
NR2F2 1.57 small profile SeqLogo of NR2F2
NFAT5 1.57 small profile SeqLogo of NFAT5
FLI1 1.57 small profile SeqLogo of FLI1
EBF3 1.56 small profile SeqLogo of EBF3
ETS1 1.53 small profile SeqLogo of ETS1
HOXD4 1.53 small profile SeqLogo of HOXD4
ZNF263 1.52 small profile SeqLogo of ZNF263
WRNIP1 1.52 small profile SeqLogo of WRNIP1
OSR1_OSR2 1.51 small profile SeqLogo of OSR1_OSR2
NR4A3 1.51 small profile SeqLogo of NR4A3
FOXA1 1.51 small profile SeqLogo of FOXA1
RAD21_SMC3 1.50 small profile SeqLogo of RAD21_SMC3
ZNF143 1.50 small profile SeqLogo of ZNF143
ZBTB12 1.50 small profile SeqLogo of ZBTB12
BARHL2 1.50 small profile SeqLogo of BARHL2
DBX2_HLX 1.49 small profile SeqLogo of DBX2_HLX
TP53 1.49 small profile SeqLogo of TP53
ZKSCAN3 1.48 small profile SeqLogo of ZKSCAN3
TBX15_MGA 1.48 small profile SeqLogo of TBX15_MGA
PITX2 1.47 small profile SeqLogo of PITX2
NR2E1 1.47 small profile SeqLogo of NR2E1
FOXD3_FOXI1_FOXF1 1.46 small profile SeqLogo of FOXD3_FOXI1_FOXF1
BRCA1 1.45 small profile SeqLogo of BRCA1
KLF3 1.45 small profile SeqLogo of KLF3
CPEB1 1.45 small profile SeqLogo of CPEB1
OTP_PHOX2B_LHX1_LMX1A_LHX5_HOXC4 1.44 small profile SeqLogo of OTP_PHOX2B_LHX1_LMX1A_LHX5_HOXC4
HOXC10_HOXD13 1.44 small profile SeqLogo of HOXC10_HOXD13
DBP 1.43 small profile SeqLogo of DBP
TFAP4_MSC 1.43 small profile SeqLogo of TFAP4_MSC
E2F6 1.43 small profile SeqLogo of E2F6
ZNF282 1.42 small profile SeqLogo of ZNF282
ONECUT2_ONECUT3 1.42 small profile SeqLogo of ONECUT2_ONECUT3
HOXC12_HOXD12 1.42 small profile SeqLogo of HOXC12_HOXD12
CUX1 1.42 small profile SeqLogo of CUX1
OTX1 1.41 small profile SeqLogo of OTX1
CLOCK 1.40 small profile SeqLogo of CLOCK
MNT_HEY1_HEY2 1.40 small profile SeqLogo of MNT_HEY1_HEY2
KLF14_SP8 1.39 small profile SeqLogo of KLF14_SP8
FOXA2_FOXJ3 1.39 small profile SeqLogo of FOXA2_FOXJ3
GLI3 1.38 small profile SeqLogo of GLI3
ZKSCAN1 1.36 small profile SeqLogo of ZKSCAN1
JDP2 1.36 small profile SeqLogo of JDP2
FUBP1 1.36 small profile SeqLogo of FUBP1
GRHL1 1.36 small profile SeqLogo of GRHL1
TFAP2B 1.36 small profile SeqLogo of TFAP2B
MZF1 1.35 small profile SeqLogo of MZF1
NKX2-3 1.34 small profile SeqLogo of NKX2-3
NFKB1 1.34 small profile SeqLogo of NFKB1
SOX14 1.34 small profile SeqLogo of SOX14
POU6F1 1.32 small profile SeqLogo of POU6F1
RARB 1.32 small profile SeqLogo of RARB
FOXO3_FOXD2 1.32 small profile SeqLogo of FOXO3_FOXD2
TFCP2 1.30 small profile SeqLogo of TFCP2
SOX4 1.30 small profile SeqLogo of SOX4
HIVEP1 1.30 small profile SeqLogo of HIVEP1
HSF1 1.30 small profile SeqLogo of HSF1
RUNX3_BCL11A 1.28 small profile SeqLogo of RUNX3_BCL11A
VDR 1.28 small profile SeqLogo of VDR
ZIC1 1.28 small profile SeqLogo of ZIC1
OLIG2_NEUROD1_ATOH1 1.26 small profile SeqLogo of OLIG2_NEUROD1_ATOH1
NR6A1 1.25 small profile SeqLogo of NR6A1
ARNT 1.25 small profile SeqLogo of ARNT
ZFHX3 1.23 small profile SeqLogo of ZFHX3
MLX_USF2_USF1_PAX2 1.23 small profile SeqLogo of MLX_USF2_USF1_PAX2
NANOG 1.23 small profile SeqLogo of NANOG
LHX3 1.23 small profile SeqLogo of LHX3
NHLH1 1.21 small profile SeqLogo of NHLH1
HOXB4_LHX9 1.21 small profile SeqLogo of HOXB4_LHX9
SCRT1_SCRT2 1.20 small profile SeqLogo of SCRT1_SCRT2
LHX6 1.20 small profile SeqLogo of LHX6
POU4F1_POU4F3 1.20 small profile SeqLogo of POU4F1_POU4F3
HMX3 1.20 small profile SeqLogo of HMX3
MEF2D_MEF2A 1.20 small profile SeqLogo of MEF2D_MEF2A
NKX2-5 1.19 small profile SeqLogo of NKX2-5
NKX2-2 1.19 small profile SeqLogo of NKX2-2
ZBTB3 1.19 small profile SeqLogo of ZBTB3
TBX2 1.19 small profile SeqLogo of TBX2
ELF3_EHF 1.19 small profile SeqLogo of ELF3_EHF
SOX5 1.18 small profile SeqLogo of SOX5
MESP1 1.18 small profile SeqLogo of MESP1
MAX_TFEB 1.17 small profile SeqLogo of MAX_TFEB
PBX3 1.16 small profile SeqLogo of PBX3
GLI2 1.16 small profile SeqLogo of GLI2
CDX2 1.16 small profile SeqLogo of CDX2
VAX2_RHOXF2 1.15 small profile SeqLogo of VAX2_RHOXF2
TCF21 1.14 small profile SeqLogo of TCF21
ZNF691 1.14 small profile SeqLogo of ZNF691
HAND1 1.14 small profile SeqLogo of HAND1
NR1H4 1.13 small profile SeqLogo of NR1H4
IRX5 1.13 small profile SeqLogo of IRX5
STAT6 1.13 small profile SeqLogo of STAT6
LHX8 1.13 small profile SeqLogo of LHX8
HBP1 1.13 small profile SeqLogo of HBP1
DPRX 1.13 small profile SeqLogo of DPRX
NR0B1 1.12 small profile SeqLogo of NR0B1
SOX6 1.12 small profile SeqLogo of SOX6
IKZF2 1.11 small profile SeqLogo of IKZF2
RXRA_NR2F6_NR2C2 1.10 small profile SeqLogo of RXRA_NR2F6_NR2C2
ZNF740_ZNF219 1.09 small profile SeqLogo of ZNF740_ZNF219
EBF1 1.09 small profile SeqLogo of EBF1
SOX11 1.08 small profile SeqLogo of SOX11
HNF4G 1.08 small profile SeqLogo of HNF4G
BACH2 1.07 small profile SeqLogo of BACH2
MIXL1_GSX1_BSX_MEOX2_LHX4 1.07 small profile SeqLogo of MIXL1_GSX1_BSX_MEOX2_LHX4
REL 1.07 small profile SeqLogo of REL
ISX 1.07 small profile SeqLogo of ISX
HOXB3 1.06 small profile SeqLogo of HOXB3
PKNOX2 1.06 small profile SeqLogo of PKNOX2
JUN 1.05 small profile SeqLogo of JUN
NR2F1 1.05 small profile SeqLogo of NR2F1
FOSL2_SMARCC1 1.04 small profile SeqLogo of FOSL2_SMARCC1
HMX2 1.04 small profile SeqLogo of HMX2
CEBPG 1.03 small profile SeqLogo of CEBPG
ZNF8 1.02 small profile SeqLogo of ZNF8
DLX1_HOXA3_BARX2 1.02 small profile SeqLogo of DLX1_HOXA3_BARX2
RREB1 1.02 small profile SeqLogo of RREB1
SHOX2_HOXC5 1.02 small profile SeqLogo of SHOX2_HOXC5
HSF4 1.01 small profile SeqLogo of HSF4
GCM1 1.01 small profile SeqLogo of GCM1
NR5A2 1.01 small profile SeqLogo of NR5A2
MAFA 1.01 small profile SeqLogo of MAFA
IRX6_IRX4 1.00 small profile SeqLogo of IRX6_IRX4
MEIS1 0.99 small profile SeqLogo of MEIS1
NR4A1 0.99 small profile SeqLogo of NR4A1
ALX1_ARX 0.99 small profile SeqLogo of ALX1_ARX
STAT4 0.98 small profile SeqLogo of STAT4
SOX1 0.98 small profile SeqLogo of SOX1
LEF1 0.98 small profile SeqLogo of LEF1
ATF5 0.97 small profile SeqLogo of ATF5
FOSB 0.97 small profile SeqLogo of FOSB
SRF 0.96 small profile SeqLogo of SRF
MEIS3_TGIF2LX 0.96 small profile SeqLogo of MEIS3_TGIF2LX
ETV2 0.96 small profile SeqLogo of ETV2
RXRG 0.95 small profile SeqLogo of RXRG
CREB3L2 0.95 small profile SeqLogo of CREB3L2
EGR1_EGR4 0.95 small profile SeqLogo of EGR1_EGR4
ZNF148 0.94 small profile SeqLogo of ZNF148
EP300 0.94 small profile SeqLogo of EP300
ISL2 0.93 small profile SeqLogo of ISL2
POU4F2 0.93 small profile SeqLogo of POU4F2
ZBTB6 0.92 small profile SeqLogo of ZBTB6
TBX19 0.92 small profile SeqLogo of TBX19
PKNOX1_TGIF2 0.92 small profile SeqLogo of PKNOX1_TGIF2
HOXB13 0.92 small profile SeqLogo of HOXB13
TBX5 0.92 small profile SeqLogo of TBX5
KLF1 0.91 small profile SeqLogo of KLF1
DDIT3 0.90 small profile SeqLogo of DDIT3
OVOL1 0.90 small profile SeqLogo of OVOL1
PRDM14 0.90 small profile SeqLogo of PRDM14
PBX1 0.88 small profile SeqLogo of PBX1
AR_NR3C2 0.87 small profile SeqLogo of AR_NR3C2
MYF6 0.87 small profile SeqLogo of MYF6
SOX30 0.86 small profile SeqLogo of SOX30
ALX3 0.86 small profile SeqLogo of ALX3
HOXD1 0.86 small profile SeqLogo of HOXD1
VSX1 0.85 small profile SeqLogo of VSX1
E2F4 0.84 small profile SeqLogo of E2F4
FOXF2_FOXJ1 0.84 small profile SeqLogo of FOXF2_FOXJ1
DMC1 0.83 small profile SeqLogo of DMC1
ESR1 0.83 small profile SeqLogo of ESR1
HDX 0.83 small profile SeqLogo of HDX
NR1D1 0.83 small profile SeqLogo of NR1D1
RORC 0.82 small profile SeqLogo of RORC
E2F2_E2F5 0.82 small profile SeqLogo of E2F2_E2F5
NR1H2 0.82 small profile SeqLogo of NR1H2
CREB3L1_CREB3 0.82 small profile SeqLogo of CREB3L1_CREB3
ATF7 0.82 small profile SeqLogo of ATF7
FOXC1 0.81 small profile SeqLogo of FOXC1
ZNF350 0.80 small profile SeqLogo of ZNF350
PRDM4 0.80 small profile SeqLogo of PRDM4
ZBTB49 0.80 small profile SeqLogo of ZBTB49
MSX1 0.80 small profile SeqLogo of MSX1
THRA_RXRB 0.80 small profile SeqLogo of THRA_RXRB
PAX1_PAX9 0.79 small profile SeqLogo of PAX1_PAX9
DLX5 0.79 small profile SeqLogo of DLX5
ZIC3_ZIC4 0.79 small profile SeqLogo of ZIC3_ZIC4
GZF1 0.78 small profile SeqLogo of GZF1
MLXIPL 0.78 small profile SeqLogo of MLXIPL
BHLHE40 0.78 small profile SeqLogo of BHLHE40
NKX1-2_RAX 0.77 small profile SeqLogo of NKX1-2_RAX
EMX1 0.77 small profile SeqLogo of EMX1
PDX1 0.76 small profile SeqLogo of PDX1
DRGX_PROP1 0.76 small profile SeqLogo of DRGX_PROP1
HOXB5 0.76 small profile SeqLogo of HOXB5
GSC_GSC2 0.75 small profile SeqLogo of GSC_GSC2
MEF2B 0.75 small profile SeqLogo of MEF2B
SREBF2 0.75 small profile SeqLogo of SREBF2
MEF2C 0.74 small profile SeqLogo of MEF2C
PAX7_NOBOX 0.74 small profile SeqLogo of PAX7_NOBOX
POU2F2_POU3F1 0.74 small profile SeqLogo of POU2F2_POU3F1
GLIS3 0.74 small profile SeqLogo of GLIS3
NR2C1 0.73 small profile SeqLogo of NR2C1
ETV4_ETS2 0.73 small profile SeqLogo of ETV4_ETS2
SMAD3 0.73 small profile SeqLogo of SMAD3
TP73 0.73 small profile SeqLogo of TP73
RORA 0.71 small profile SeqLogo of RORA
HOXB7 0.71 small profile SeqLogo of HOXB7
ZIC2_GLI1 0.70 small profile SeqLogo of ZIC2_GLI1
SOX7 0.70 small profile SeqLogo of SOX7
TCF7L1 0.70 small profile SeqLogo of TCF7L1
KLF13 0.69 small profile SeqLogo of KLF13
HES1 0.69 small profile SeqLogo of HES1
HES7_HES5 0.69 small profile SeqLogo of HES7_HES5
ETV6 0.68 small profile SeqLogo of ETV6
TCF7L2 0.67 small profile SeqLogo of TCF7L2
NKX3-1 0.66 small profile SeqLogo of NKX3-1
NR1I3 0.66 small profile SeqLogo of NR1I3
VAX1_GSX2 0.66 small profile SeqLogo of VAX1_GSX2
HNF1A_HNF1B 0.64 small profile SeqLogo of HNF1A_HNF1B
HOXC6_HOXA7 0.64 small profile SeqLogo of HOXC6_HOXA7
ZNF423 0.63 small profile SeqLogo of ZNF423
EN1_ESX1_GBX1 0.63 small profile SeqLogo of EN1_ESX1_GBX1
SOX21 0.63 small profile SeqLogo of SOX21
FOXA3_FOXC2 0.63 small profile SeqLogo of FOXA3_FOXC2
RELA 0.63 small profile SeqLogo of RELA
HIF1A 0.62 small profile SeqLogo of HIF1A
STAT5B 0.61 small profile SeqLogo of STAT5B
BHLHE22_BHLHA15_BHLHE23 0.61 small profile SeqLogo of BHLHE22_BHLHA15_BHLHE23
TFCP2L1 0.61 small profile SeqLogo of TFCP2L1
T 0.61 small profile SeqLogo of T
MSX2 0.61 small profile SeqLogo of MSX2
OTX2_CRX 0.60 small profile SeqLogo of OTX2_CRX
OLIG1 0.60 small profile SeqLogo of OLIG1
EVX2 0.60 small profile SeqLogo of EVX2
CREB5_CREM_JUNB 0.60 small profile SeqLogo of CREB5_CREM_JUNB
TFEC_MITF_ARNTL_BHLHE41 0.59 small profile SeqLogo of TFEC_MITF_ARNTL_BHLHE41
PBX2 0.59 small profile SeqLogo of PBX2
INSM1 0.59 small profile SeqLogo of INSM1
NKX1-1 0.59 small profile SeqLogo of NKX1-1
MBD2 0.57 small profile SeqLogo of MBD2
HINFP1 0.56
small profile SeqLogo of HINFP1
HOXD11_HOXA11 0.56 small profile SeqLogo of HOXD11_HOXA11
PPARD 0.56 small profile SeqLogo of PPARD
HMGA2 0.56 small profile SeqLogo of HMGA2
EGR3_EGR2 0.55 small profile SeqLogo of EGR3_EGR2
SOX9 0.55 small profile SeqLogo of SOX9
TBX20 0.53 small profile SeqLogo of TBX20
ZNF410 0.53 small profile SeqLogo of ZNF410
LMX1B_MNX1_RAX2 0.53 small profile SeqLogo of LMX1B_MNX1_RAX2
RFX5 0.53 small profile SeqLogo of RFX5
HNF4A 0.52 small profile SeqLogo of HNF4A
SHOX 0.52 small profile SeqLogo of SHOX
SIX4 0.52 small profile SeqLogo of SIX4
TGIF1 0.52 small profile SeqLogo of TGIF1
NKX2-6 0.51 small profile SeqLogo of NKX2-6
PPARA 0.51 small profile SeqLogo of PPARA
PRRX1_ALX4_PHOX2A 0.51 small profile SeqLogo of PRRX1_ALX4_PHOX2A
PLAG1 0.51 small profile SeqLogo of PLAG1
STAT1_STAT3_BCL6 0.50 small profile SeqLogo of STAT1_STAT3_BCL6
TFAP2E 0.50 small profile SeqLogo of TFAP2E
GTF2I 0.49 small profile SeqLogo of GTF2I
VENTX 0.49 small profile SeqLogo of VENTX
FOXD1_FOXO1_FOXO6_FOXG1_FOXP1 0.48 small profile SeqLogo of FOXD1_FOXO1_FOXO6_FOXG1_FOXP1
DLX3_EVX1_MEOX1 0.47 small profile SeqLogo of DLX3_EVX1_MEOX1
RBPJ 0.45 small profile SeqLogo of RBPJ
NKX6-3 0.45 small profile SeqLogo of NKX6-3
DMBX1 0.45 small profile SeqLogo of DMBX1
ESRRB_ESRRG 0.42 small profile SeqLogo of ESRRB_ESRRG
HLF_TEF 0.42 small profile SeqLogo of HLF_TEF
REST 0.41 small profile SeqLogo of REST
HMX1 0.41 small profile SeqLogo of HMX1
HOXA2_HOXB1 0.40 small profile SeqLogo of HOXA2_HOXB1
FOSL1 0.40 small profile SeqLogo of FOSL1
NR4A2 0.40 small profile SeqLogo of NR4A2
SOX10_SOX15 0.40 small profile SeqLogo of SOX10_SOX15
ETV3 0.40 small profile SeqLogo of ETV3
THRB 0.37 small profile SeqLogo of THRB
ATF4 0.35 small profile SeqLogo of ATF4
ZNF232 0.35 small profile SeqLogo of ZNF232
TCF3_MYOG 0.35 small profile SeqLogo of TCF3_MYOG
HSF2 0.34 small profile SeqLogo of HSF2
CREB1 0.33 small profile SeqLogo of CREB1
NOTO_VSX2_DLX2_DLX6_NKX6-1 0.31 small profile SeqLogo of NOTO_VSX2_DLX2_DLX6_NKX6-1
EN2_GBX2_LBX2 0.30 small profile SeqLogo of EN2_GBX2_LBX2
MYOD1 0.28 small profile SeqLogo of MYOD1
ZBED1 0.28 small profile SeqLogo of ZBED1
POU6F2 0.27 small profile SeqLogo of POU6F2
SRY 0.25 small profile SeqLogo of SRY
SPDEF 0.25 small profile SeqLogo of SPDEF
CBFB 0.23 small profile SeqLogo of CBFB
HOXC11 0.22 small profile SeqLogo of HOXC11
FIGLA 0.20 small profile SeqLogo of FIGLA
GATA6 0.20 small profile SeqLogo of GATA6
BATF3 0.19 small profile SeqLogo of BATF3
GLIS1 0.16 small profile SeqLogo of GLIS1
TBX4 0.11 small profile SeqLogo of TBX4
EZH2 0.00 small profile SeqLogo of EZH2
E4F1 0.00 small profile SeqLogo of E4F1
HOXA4 0.00 small profile SeqLogo of HOXA4
HOXB6_PRRX2 0.00 small profile SeqLogo of HOXB6_PRRX2
HOXA6 0.00 small profile SeqLogo of HOXA6
KLF6 0.00 small profile SeqLogo of KLF6
SPI1 0.00 small profile SeqLogo of SPI1
TFDP1 0.00 small profile SeqLogo of TFDP1

List of samples with summary statistics on CRE signal intensities

Sample name Condition Replicate/Batch CRE number Mean CRE signal intensity Std. Dev. of signal intensity across CREs Fraction of CRE signal intensity variance explained by motif activities
CD4positiveCD25positivealphabetaregulatoryTcellH3K4me3 48831 0.503 1.9673 0.050
CD4positivealphabetaTcellH3K4me3 58781 0.684 1.8840 0.068
CD4positivealphabetamemoryTcellH3K4me3 21499 0.292 1.0962 0.218
astrocyteH3K4me3 92813 0.842 1.2797 0.042
commonmyeloidprogenitorCD34positiveH3K4me3 91075 0.980 1.4069 0.017
fibroblastofdermisH3K4me3 149582 1.163 1.3329 0.051
keratinocyteH3K4me3 116616 1.496 1.5577 0.040
neutrophilH3K4me3 93641 0.960 1.3911 0.041
osteoblastH3K4me3 95769 1.114 1.3422 0.028