Project
ENCODE: H3K4me3 ChIP-Seq of primary human cells
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CREMA identifies cis-regulatory elements genome-wide and models their activities across samples in terms of predicted transcription factor binding sites within them.

Regulatory motifs sorted by significance (z-value)

Motif name Z-value Associated genes Profile Logo
ZNF711_TFAP2A_TFAP2D 11.68 small profile SeqLogo of ZNF711_TFAP2A_TFAP2D
CXXC1 10.13 small profile SeqLogo of CXXC1
RCOR1_MTA3 9.44 small profile SeqLogo of RCOR1_MTA3
SPIC 9.37 small profile SeqLogo of SPIC
ID4_TCF4_SNAI2 9.20 small profile SeqLogo of ID4_TCF4_SNAI2
ZNF274 8.50 small profile SeqLogo of ZNF274
NFIX_NFIB 7.51 small profile SeqLogo of NFIX_NFIB
SP4_PML 7.28 small profile SeqLogo of SP4_PML
MECP2 6.74 small profile SeqLogo of MECP2
CEBPA 6.54 small profile SeqLogo of CEBPA
IRF2_STAT2_IRF8_IRF1 6.52 small profile SeqLogo of IRF2_STAT2_IRF8_IRF1
ELK4_ETV5_ELK1_ELK3_ELF4 6.43 small profile SeqLogo of ELK4_ETV5_ELK1_ELK3_ELF4
FOXL1 6.40 small profile SeqLogo of FOXL1
RUNX1_RUNX2 6.11 small profile SeqLogo of RUNX1_RUNX2
ZBTB16 6.01 small profile SeqLogo of ZBTB16
TP63 5.89 small profile SeqLogo of TP63
TEAD3_TEAD1 5.83 small profile SeqLogo of TEAD3_TEAD1
ELF2_GABPA_ELF5 5.52 small profile SeqLogo of ELF2_GABPA_ELF5
WT1_MTF1_ZBTB7B 5.51 small profile SeqLogo of WT1_MTF1_ZBTB7B
E2F3 5.30 small profile SeqLogo of E2F3
HMGA1 5.24 small profile SeqLogo of HMGA1
ARID3A 5.23 small profile SeqLogo of ARID3A
FOXM1_TBL1XR1 5.17 small profile SeqLogo of FOXM1_TBL1XR1
PAX5 5.09 small profile SeqLogo of PAX5
GATA3 5.06 small profile SeqLogo of GATA3
PLAGL1 4.97 small profile SeqLogo of PLAGL1
SIX5_SMARCC2_HCFC1 4.92 small profile SeqLogo of SIX5_SMARCC2_HCFC1
ERG 4.79 small profile SeqLogo of ERG
GMEB2 4.58 small profile SeqLogo of GMEB2
ARID5A 4.43 small profile SeqLogo of ARID5A
PITX1 4.42 small profile SeqLogo of PITX1
SP100 4.41 small profile SeqLogo of SP100
YBX1_FOS_NFYC_NFYA_NFYB_CEBPZ 4.40 small profile SeqLogo of YBX1_FOS_NFYC_NFYA_NFYB_CEBPZ
PATZ1_KLF4 4.38 small profile SeqLogo of PATZ1_KLF4
ZNF384 4.27 small profile SeqLogo of ZNF384
TAF1 4.19 small profile SeqLogo of TAF1
PRDM1 4.18 small profile SeqLogo of PRDM1
NFATC4 4.13 small profile SeqLogo of NFATC4
IRF7 4.12 small profile SeqLogo of IRF7
MAFK 4.05 small profile SeqLogo of MAFK
NRF1 4.04 small profile SeqLogo of NRF1
POU3F2 4.02 small profile SeqLogo of POU3F2
AHR_ARNT2 4.01 small profile SeqLogo of AHR_ARNT2
BATF 3.97 small profile SeqLogo of BATF
GFI1B 3.91 small profile SeqLogo of GFI1B
DLX4_HOXD8 3.91 small profile SeqLogo of DLX4_HOXD8
ZBTB33_CHD2 3.89 small profile SeqLogo of ZBTB33_CHD2
SOX3_SOX2 3.87 small profile SeqLogo of SOX3_SOX2
TAL1 3.87 small profile SeqLogo of TAL1
HOXC8 3.86 small profile SeqLogo of HOXC8
YY1_YY2 3.84 small profile SeqLogo of YY1_YY2
ESRRA_ESR2 3.74 small profile SeqLogo of ESRRA_ESR2
SOX8 3.64 small profile SeqLogo of SOX8
BARHL1 3.61 small profile SeqLogo of BARHL1
ZEB1 3.53 small profile SeqLogo of ZEB1
MAFB 3.42 small profile SeqLogo of MAFB
IRF6_IRF4_IRF5 3.40 small profile SeqLogo of IRF6_IRF4_IRF5
SPIB 3.40 small profile SeqLogo of SPIB
ZNF35 3.37 small profile SeqLogo of ZNF35
FOXK1_FOXP2_FOXB1_FOXP3 3.34 small profile SeqLogo of FOXK1_FOXP2_FOXB1_FOXP3
GATA5 3.33 small profile SeqLogo of GATA5
SOX18 3.32 small profile SeqLogo of SOX18
CDC5L 3.32 small profile SeqLogo of CDC5L
KLF16_SP2 3.30 small profile SeqLogo of KLF16_SP2
ZNF524 3.29 small profile SeqLogo of ZNF524
HOMEZ 3.26 small profile SeqLogo of HOMEZ
MYBL2 3.20 small profile SeqLogo of MYBL2
HOXA5 3.19 small profile SeqLogo of HOXA5
GATA1_GATA4 3.16 small profile SeqLogo of GATA1_GATA4
HSFY2 3.16 small profile SeqLogo of HSFY2
ZFX 3.12 small profile SeqLogo of ZFX
GMEB1 3.07 small profile SeqLogo of GMEB1
MYBL1 3.06 small profile SeqLogo of MYBL1
FOXN1 3.05 small profile SeqLogo of FOXN1
IKZF1 3.03 small profile SeqLogo of IKZF1
NR3C1 2.99 small profile SeqLogo of NR3C1
TFAP2C 2.99 small profile SeqLogo of TFAP2C
CUX2 2.96 small profile SeqLogo of CUX2
GATA2 2.96 small profile SeqLogo of GATA2
OLIG3_NEUROD2_NEUROG2 2.88 small profile SeqLogo of OLIG3_NEUROD2_NEUROG2
POU5F1_POU2F3 2.87 small profile SeqLogo of POU5F1_POU2F3
ISL1 2.81 small profile SeqLogo of ISL1
MAZ_ZNF281_GTF2F1 2.79 small profile SeqLogo of MAZ_ZNF281_GTF2F1
SMAD1 2.78 small profile SeqLogo of SMAD1
SP1 2.76 small profile SeqLogo of SP1
BPTF 2.72 small profile SeqLogo of BPTF
ONECUT1 2.72 small profile SeqLogo of ONECUT1
SP3 2.67 small profile SeqLogo of SP3
TCF7 2.64 small profile SeqLogo of TCF7
EOMES 2.63 small profile SeqLogo of EOMES
HIC2 2.59 small profile SeqLogo of HIC2
HOXD9 2.58 small profile SeqLogo of HOXD9
TBX1 2.57 small profile SeqLogo of TBX1
IRF3 2.56 small profile SeqLogo of IRF3
MYB 2.55 small profile SeqLogo of MYB
ATF2_ATF1_ATF3 2.55 small profile SeqLogo of ATF2_ATF1_ATF3
RARA 2.54 small profile SeqLogo of RARA
EPAS1_BCL3 2.52 small profile SeqLogo of EPAS1_BCL3
HIC1 2.51 small profile SeqLogo of HIC1
POU2F1 2.48 small profile SeqLogo of POU2F1
FOXQ1 2.48 small profile SeqLogo of FOXQ1
BACH1_NFE2_NFE2L2 2.46 small profile SeqLogo of BACH1_NFE2_NFE2L2
SIN3A_CHD1 2.42 small profile SeqLogo of SIN3A_CHD1
ZNF333 2.40 small profile SeqLogo of ZNF333
MEIS2 2.39 small profile SeqLogo of MEIS2
HOXD10 2.39 small profile SeqLogo of HOXD10
SOX13_SOX12 2.39 small profile SeqLogo of SOX13_SOX12
ZBTB14 2.37 small profile SeqLogo of ZBTB14
GLIS2 2.37 small profile SeqLogo of GLIS2
KLF8 2.37 small profile SeqLogo of KLF8
AIRE 2.36 small profile SeqLogo of AIRE
HMBOX1 2.35 small profile SeqLogo of HMBOX1
IRX3 2.33 small profile SeqLogo of IRX3
MAF_NRL 2.31 small profile SeqLogo of MAF_NRL
PITX3 2.28 small profile SeqLogo of PITX3
PAX4 2.27 small profile SeqLogo of PAX4
PAX6 2.26 small profile SeqLogo of PAX6
NFIA 2.26 small profile SeqLogo of NFIA
E2F7_E2F1 2.24 small profile SeqLogo of E2F7_E2F1
E2F8 2.23 small profile SeqLogo of E2F8
TEAD4 2.20 small profile SeqLogo of TEAD4
NFATC2_NFATC3 2.20 small profile SeqLogo of NFATC2_NFATC3
HOXA9 2.18 small profile SeqLogo of HOXA9
LHX2 2.18 small profile SeqLogo of LHX2
PAX8 2.16 small profile SeqLogo of PAX8
CEBPE_CEBPD 2.16 small profile SeqLogo of CEBPE_CEBPD
ETV1_ERF_FEV_ELF1 2.16 small profile SeqLogo of ETV1_ERF_FEV_ELF1
TWIST1_SNAI1 2.15 small profile SeqLogo of TWIST1_SNAI1
PGR 2.13 small profile SeqLogo of PGR
UBP1 2.11 small profile SeqLogo of UBP1
RARG 2.08 small profile SeqLogo of RARG
SMAD4 2.08 small profile SeqLogo of SMAD4
NKX6-2 2.06 small profile SeqLogo of NKX6-2
RELB 2.06 small profile SeqLogo of RELB
SREBF1_TFE3 2.05 small profile SeqLogo of SREBF1_TFE3
MAFF_MAFG 2.03 small profile SeqLogo of MAFF_MAFG
SMAD2 2.02 small profile SeqLogo of SMAD2
MXI1_MYC_MYCN 2.02 small profile SeqLogo of MXI1_MYC_MYCN
KLF12 2.01 small profile SeqLogo of KLF12
DUXA 2.01 small profile SeqLogo of DUXA
IRX2 2.00 small profile SeqLogo of IRX2
NFKB2 1.99 small profile SeqLogo of NFKB2
TBX3 1.99 small profile SeqLogo of TBX3
STAT5A 1.98 small profile SeqLogo of STAT5A
PPARG 1.97 small profile SeqLogo of PPARG
HOXC13 1.96 small profile SeqLogo of HOXC13
NR2E3 1.94 small profile SeqLogo of NR2E3
NKX2-4 1.93 small profile SeqLogo of NKX2-4
KLF7 1.91 small profile SeqLogo of KLF7
FOXO4 1.91 small profile SeqLogo of FOXO4
ZBTB18 1.91 small profile SeqLogo of ZBTB18
BARX1 1.90 small profile SeqLogo of BARX1
CEBPB 1.89 small profile SeqLogo of CEBPB
ZSCAN4 1.89 small profile SeqLogo of ZSCAN4
RFX7_RFX4_RFX1 1.89 small profile SeqLogo of RFX7_RFX4_RFX1
EMX2 1.89 small profile SeqLogo of EMX2
RHOXF1 1.88 small profile SeqLogo of RHOXF1
ZNF652 1.88 small profile SeqLogo of ZNF652
PAX3 1.86 small profile SeqLogo of PAX3
POU1F1 1.86 small profile SeqLogo of POU1F1
TCF12_ASCL2 1.84 small profile SeqLogo of TCF12_ASCL2
ATF6 1.83 small profile SeqLogo of ATF6
GFI1 1.82 small profile SeqLogo of GFI1
CTCF_CTCFL 1.81 small profile SeqLogo of CTCF_CTCFL
NFIL3 1.81 small profile SeqLogo of NFIL3
CENPB 1.80 small profile SeqLogo of CENPB
ZBTB4 1.80 small profile SeqLogo of ZBTB4
BBX 1.79 small profile SeqLogo of BBX
CDX1 1.78 small profile SeqLogo of CDX1
HOXA1 1.77 small profile SeqLogo of HOXA1
TBP 1.77 small profile SeqLogo of TBP
TLX2 1.77 small profile SeqLogo of TLX2
NFE2L1 1.76 small profile SeqLogo of NFE2L1
POU3F3_POU3F4 1.75 small profile SeqLogo of POU3F3_POU3F4
NFATC1 1.75 small profile SeqLogo of NFATC1
MECOM 1.74 small profile SeqLogo of MECOM
JUND 1.73 small profile SeqLogo of JUND
ZNF784 1.72 small profile SeqLogo of ZNF784
HOXB2_UNCX_HOXD3 1.72 small profile SeqLogo of HOXB2_UNCX_HOXD3
PROX1 1.72 small profile SeqLogo of PROX1
PTF1A 1.71 small profile SeqLogo of PTF1A
ETV7 1.71 small profile SeqLogo of ETV7
SIX1_SIX3_SIX2 1.68 small profile SeqLogo of SIX1_SIX3_SIX2
RFX3_RFX2 1.68 small profile SeqLogo of RFX3_RFX2
TLX1_NFIC 1.68 small profile SeqLogo of TLX1_NFIC
HINFP 1.67 small profile SeqLogo of HINFP
HESX1 1.66 small profile SeqLogo of HESX1
HOXC9 1.65 small profile SeqLogo of HOXC9
HOXA13 1.65 small profile SeqLogo of HOXA13
NKX3-2 1.65 small profile SeqLogo of NKX3-2
FOXJ2 1.65 small profile SeqLogo of FOXJ2
GCM2 1.64 small profile SeqLogo of GCM2
SOX17 1.62 small profile SeqLogo of SOX17
NKX2-8 1.62 small profile SeqLogo of NKX2-8
KLF15 1.62 small profile SeqLogo of KLF15
TBX21_TBR1 1.61 small profile SeqLogo of TBX21_TBR1
HOXB8 1.60 small profile SeqLogo of HOXB8
IRF9 1.60 small profile SeqLogo of IRF9
ARID5B 1.60 small profile SeqLogo of ARID5B
NKX2-1 1.59 small profile SeqLogo of NKX2-1
XBP1 1.58 small profile SeqLogo of XBP1
ZBTB7A_ZBTB7C 1.58 small profile SeqLogo of ZBTB7A_ZBTB7C
BCL6B 1.58 small profile SeqLogo of BCL6B
SIX6 1.58 small profile SeqLogo of SIX6
NR1I2 1.58 small profile SeqLogo of NR1I2
HOXA10_HOXB9 1.58 small profile SeqLogo of HOXA10_HOXB9
NR2F2 1.57 small profile SeqLogo of NR2F2
NFAT5 1.57 small profile SeqLogo of NFAT5
FLI1 1.57 small profile SeqLogo of FLI1
EBF3 1.56 small profile SeqLogo of EBF3
ETS1 1.53 small profile SeqLogo of ETS1
HOXD4 1.53 small profile SeqLogo of HOXD4
ZNF263 1.52 small profile SeqLogo of ZNF263
WRNIP1 1.52 small profile SeqLogo of WRNIP1
OSR1_OSR2 1.51 small profile SeqLogo of OSR1_OSR2
NR4A3 1.51 small profile SeqLogo of NR4A3
FOXA1 1.51 small profile SeqLogo of FOXA1
RAD21_SMC3 1.50 small profile SeqLogo of RAD21_SMC3
ZNF143 1.50 small profile SeqLogo of ZNF143
ZBTB12 1.50 small profile SeqLogo of ZBTB12
BARHL2 1.50 small profile SeqLogo of BARHL2
DBX2_HLX 1.49 small profile SeqLogo of DBX2_HLX
TP53 1.49 small profile SeqLogo of TP53
ZKSCAN3 1.48 small profile SeqLogo of ZKSCAN3
TBX15_MGA 1.48 small profile SeqLogo of TBX15_MGA
PITX2 1.47 small profile SeqLogo of PITX2
NR2E1 1.47 small profile SeqLogo of NR2E1
FOXD3_FOXI1_FOXF1 1.46 small profile SeqLogo of FOXD3_FOXI1_FOXF1
BRCA1 1.45 small profile SeqLogo of BRCA1
KLF3 1.45 small profile SeqLogo of KLF3
CPEB1 1.45 small profile SeqLogo of CPEB1
OTP_PHOX2B_LHX1_LMX1A_LHX5_HOXC4 1.44 small profile SeqLogo of OTP_PHOX2B_LHX1_LMX1A_LHX5_HOXC4
HOXC10_HOXD13 1.44 small profile SeqLogo of HOXC10_HOXD13
DBP 1.43 small profile SeqLogo of DBP
TFAP4_MSC 1.43 small profile SeqLogo of TFAP4_MSC
E2F6 1.43 small profile SeqLogo of E2F6
ZNF282 1.42 small profile SeqLogo of ZNF282
ONECUT2_ONECUT3 1.42 small profile SeqLogo of ONECUT2_ONECUT3
HOXC12_HOXD12 1.42 small profile SeqLogo of HOXC12_HOXD12
CUX1 1.42 small profile SeqLogo of CUX1
OTX1 1.41 small profile SeqLogo of OTX1
CLOCK 1.40 small profile SeqLogo of CLOCK
MNT_HEY1_HEY2 1.40 small profile SeqLogo of MNT_HEY1_HEY2
KLF14_SP8 1.39 small profile SeqLogo of KLF14_SP8
FOXA2_FOXJ3 1.39 small profile SeqLogo of FOXA2_FOXJ3
GLI3 1.38 small profile SeqLogo of GLI3
ZKSCAN1 1.36 small profile SeqLogo of ZKSCAN1
JDP2 1.36 small profile SeqLogo of JDP2
FUBP1 1.36 small profile SeqLogo of FUBP1
GRHL1 1.36 small profile SeqLogo of GRHL1
TFAP2B 1.36 small profile SeqLogo of TFAP2B
MZF1 1.35 small profile SeqLogo of MZF1
NKX2-3 1.34 small profile SeqLogo of NKX2-3
NFKB1 1.34 small profile SeqLogo of NFKB1
SOX14 1.34 small profile SeqLogo of SOX14
POU6F1 1.32 small profile SeqLogo of POU6F1
RARB 1.32 small profile SeqLogo of RARB
FOXO3_FOXD2 1.32 small profile SeqLogo of FOXO3_FOXD2
TFCP2 1.30 small profile SeqLogo of TFCP2
SOX4 1.30 small profile SeqLogo of SOX4
HIVEP1 1.30 small profile SeqLogo of HIVEP1
HSF1 1.30 small profile SeqLogo of HSF1
RUNX3_BCL11A 1.28 small profile SeqLogo of RUNX3_BCL11A
VDR 1.28 small profile SeqLogo of VDR
ZIC1 1.28 small profile SeqLogo of ZIC1
OLIG2_NEUROD1_ATOH1 1.26 small profile SeqLogo of OLIG2_NEUROD1_ATOH1
NR6A1 1.25 small profile SeqLogo of NR6A1
ARNT 1.25 small profile SeqLogo of ARNT
ZFHX3 1.23 small profile SeqLogo of ZFHX3
MLX_USF2_USF1_PAX2 1.23 small profile SeqLogo of MLX_USF2_USF1_PAX2
NANOG 1.23 small profile SeqLogo of NANOG
LHX3 1.23 small profile SeqLogo of LHX3
NHLH1 1.21 small profile SeqLogo of NHLH1
HOXB4_LHX9 1.21 small profile SeqLogo of HOXB4_LHX9
SCRT1_SCRT2 1.20 small profile SeqLogo of SCRT1_SCRT2
LHX6 1.20 small profile SeqLogo of LHX6
POU4F1_POU4F3 1.20 small profile SeqLogo of POU4F1_POU4F3
HMX3 1.20 small profile SeqLogo of HMX3
MEF2D_MEF2A 1.20 small profile SeqLogo of MEF2D_MEF2A
NKX2-5 1.19 small profile SeqLogo of NKX2-5
NKX2-2 1.19 small profile SeqLogo of NKX2-2
ZBTB3 1.19 small profile SeqLogo of ZBTB3
TBX2 1.19 small profile SeqLogo of TBX2
ELF3_EHF 1.19 small profile SeqLogo of ELF3_EHF
SOX5 1.18 small profile SeqLogo of SOX5
MESP1 1.18 small profile SeqLogo of MESP1
MAX_TFEB 1.17 small profile SeqLogo of MAX_TFEB
PBX3 1.16 small profile SeqLogo of PBX3
GLI2 1.16 small profile SeqLogo of GLI2
CDX2 1.16 small profile SeqLogo of CDX2
VAX2_RHOXF2 1.15